metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJEB64798" and clusterLCA_curated = "Fish-associated picorna-like virus 3"

2 rows where bioproject = "PRJEB64798" and clusterLCA_curated = "Fish-associated picorna-like virus 3"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10018	10018	PRJEB64798_CONTIG_1247\|Fish-associated_picorna-like_virus_3\|CLUSTER1_Fish-associated_picorna-like_virus_3\|12\|3	Fish-associated picorna-like virus 3	Endogenous or not fish-associated	PRJEB64798_CONTIG_1247\|Fish-associated_picorna-like_virus_3	PRJEB64798_CONTIG_1247	Fish-associated picorna-like virus 3	12	3	1	CLUSTER1_Fish-associated_picorna-like_virus_3\|12\|3	PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0\|Fish-associated_picorna-like_virus_3\|NR\|4.87e-42\|NA	12	3	PRJEB64798	1247	1574	19.076721	300.2675885	Fish-associated picorna-like virus 3	3003959	Viruses	Viruses	173.0	4.8699999999999995e-42	Fish-associated picorna-like virus 3	Non-phage	NR	PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0		WAQ80627.1 MAG: hypothetical protein [Fish-associated picorna-like virus 3]	WAQ80627.1	3003959	g909	i0	39.1	1.019695044	261	148	48.4	6	793	32	2011	2267	1605	173.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales			Fish-associated picorna-like virus 3	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3		Fish-associated picorna-like virus 3			Viruses		Viruses		173.0		4.8699999999999995e-42
10059	10059	PRJEB64798_CONTIG_212750\|Picornavirales_sp.\|CLUSTER1_Fish-associated_picorna-like_virus_3\|12\|3	Fish-associated picorna-like virus 3	Endogenous or not fish-associated	PRJEB64798_CONTIG_212750\|Picornavirales_sp.	PRJEB64798_CONTIG_212750	Fish-associated picorna-like virus 3	12	3	1	CLUSTER1_Fish-associated_picorna-like_virus_3\|12\|3	PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0\|Fish-associated_picorna-like_virus_3\|NR\|4.87e-42\|NA	12	3	PRJEB64798	212750	164	1.713043	2.80939052	Picornavirales sp.	1955153	Viruses	Viruses	50.4	2.43e-05	Picornavirales sp.	Non-phage	NR	PRJEB64798_P_NODE_212750_length_164_cov_1.713043_g210984_i0		XCM68446.1 MAG: structural polyprotein, partial [Picornavirales sp.]	XCM68446.1	1955153	g210984	i0	52.1	0.87804878	48	23	87.8	0	149	6	213	260	144	50.4	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales			Picornavirales sp.	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3		Picornavirales sp.			Viruses		Viruses		50.4		2.43e-05

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;