RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where bioproject = "PRJEB2368" and clusterLCA_curated = "Zebrafish rhabdo-like virus"

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tax_species_NTorNR 1

clusterLCA_curated 1

  • Zebrafish rhabdo-like virus · 2 ✖

bioproject 1

  • PRJEB2368 · 2 ✖

Category 1

tax_genus_NTorNR 0

tax_family_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9801 9801 PRJEB2368_CONTIG_55|Salmovirus_WFRC1|CLUSTER1_Salmovirus_WFRC1|20|6 Zebrafish rhabdo-like virus Novel PRJEB2368_CONTIG_55|Salmovirus_WFRC1 PRJEB2368_CONTIG_55 Salmovirus WFRC1 37 9 6 CLUSTER1_Salmovirus_WFRC1|20|6 PRJEB2368_P_NODE_55_length_2750_cov_4.192407_g36_i0|Salmovirus_WFRC1|NR|7.9e-107|NA 20 6 PRJEB2368 55 2750 4.192407 115.2911925 Salmovirus WFRC1 1981916 Viruses Viruses 360.0 7.9e-107 Salmovirus WFRC1 Non-phage NR PRJEB2368_P_NODE_55_length_2750_cov_4.192407_g36_i0   YP_009361866.1 polyprotein [Salmovirus WFRC1] YP_009361866.1 1981916 g36 i0 57.1 0.343636364 315 130 34.0 2 1063 128 103 415 945 360.0 1.0 Viruses               Salmovirus WFRC1 Viruses;Zebrafish rhabdo-like virus   Salmovirus WFRC1     Viruses   Viruses   360.0   7.9e-107
10081 10081 PRJEB2368_CONTIG_4010|Salmovirus_WFRC1|CLUSTER2_Salmovirus_WFRC1|10|5 Zebrafish rhabdo-like virus Novel PRJEB2368_CONTIG_4010|Salmovirus_WFRC1 PRJEB2368_CONTIG_4010 Salmovirus WFRC1 37 9 6 CLUSTER2_Salmovirus_WFRC1|10|5 PRJNA906165_P_NODE_155_length_1461_cov_3.291066_g112_i0|Salmovirus_WFRC1|NR|7.69e-84|NA 10 5 PRJEB2368 4010 396 2.011142 7.96412232 Salmovirus WFRC1 1981916 Viruses Viruses 103.0 7.729999999999999e-23 Salmovirus WFRC1 Non-phage NR PRJEB2368_P_NODE_4010_length_396_cov_2.011142_g3698_i0   YP_009361866.1 polyprotein [Salmovirus WFRC1] YP_009361866.1 1981916 g3698 i0 58.8 0.734848485 97 40 73.5 0 3 293 502 598 291 103.0 1.0 Viruses               Salmovirus WFRC1 Viruses;Zebrafish rhabdo-like virus   Salmovirus WFRC1     Viruses   Viruses   103.0   7.729999999999999e-23

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;