RNAquarium Metadata Server
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viruses_fish_associated_curated

7 rows where bioproject = "PRJEB2368" and clusterLCA_curated = "Zebrafish influenza B-like virus"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish influenza B-like virus · 7 ✖

bioproject 1

  • PRJEB2368 · 7 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9856 9856 PRJEB2368_CONTIG_159|Betainfluenzavirus_influenzae|CLUSTER1_Betainfluenzavirus|18|9 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_159|Betainfluenzavirus_influenzae PRJEB2368_CONTIG_159 Betainfluenzavirus 80 13 8 CLUSTER1_Betainfluenzavirus|18|9 PRJEB2368_P_NODE_159_length_1879_cov_149.901737_g111_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 18 9 PRJEB2368 159 1879 149.901737 2816.653638 Betainfluenzavirus influenzae 2955465 Viruses Viruses 1040.0 0.0 Betainfluenzavirus influenzae Non-phage NTclustered PRJEB2368_P_NODE_159_length_1879_cov_149.901737_g111_i0   Influenza B virus (B/Arkansas/03/2024) segment 5 nucleoprotein (NP) gene, complete cds gi|2716140925|gb|PP640154.1| 11520 g111 i0 78.752 83.5784992 1586 314 84.0 22 39 1616 1815 245 157044 1040.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae Influenza B virus gi|2716140925|gb|PP640154.1| Viruses Viruses Viruses Viruses 1040.0 862.0 0.0 2.35e-305
9889 9889 PRJEB2368_CONTIG_81|Betainfluenzavirus|CLUSTER2_Betainfluenzavirus|15|6 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_81|Betainfluenzavirus PRJEB2368_CONTIG_81 Betainfluenzavirus 80 13 8 CLUSTER2_Betainfluenzavirus|15|6 PRJEB2368_P_NODE_81_length_2400_cov_12.127380_g53_i0|Betainfluenzavirus|NTclustered|0|NA 15 6 PRJEB2368 81 2400 12.12738 291.05712 Betainfluenzavirus 197912 Viruses Viruses 1605.0 0.0 Betainfluenzavirus Non-phage NTclustered PRJEB2368_P_NODE_81_length_2400_cov_12.127380_g53_i0   Influenza B virus (B/Maryland/33/2018) segment 1 polymerase PB1 (PB1) gene, complete cds gi|1565830798|gb|MK474589.1| 11520 g53 i0 79.523 93.26083333 2266 454 94.0 10 54 2314 1 2261 223826 1616.0 0.993193069 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Influenza B virus (B/Lee/194 gi|1565830798|gb|MK474589.1| Viruses Viruses Viruses Viruses 1605.0 1420.0 0.0 0.0
9893 9893 PRJEB2368_CONTIG_169|Wuhan_spiny_eel_influenza_virus|CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_169|Wuhan_spiny_eel_influenza_virus PRJEB2368_CONTIG_169 Wuhan spiny eel influenza virus 80 13 8 CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 PRJNA345071_P_NODE_21_length_1869_cov_841.831292_g15_i0|Wuhan_spiny_eel_influenza_virus|NR|2.51e-251|NA 15 11 PRJEB2368 169 1842 161.344044 2971.95729 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 699.0 3.7e-246 Wuhan spiny eel influenza virus Non-phage NR PRJEB2368_P_NODE_169_length_1842_cov_161.344044_g121_i0   AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] AVM87624.1 2116483 g121 i0 62.2 0.913680782 561 208 91.2 3 1798 119 11 568 1683 699.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   699.0   3.7e-246
9947 9947 PRJEB2368_CONTIG_284|Wuhan_spiny_eel_influenza_virus|CLUSTER2_Wuhan_spiny_eel_influenza_virus|14|10 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_284|Wuhan_spiny_eel_influenza_virus PRJEB2368_CONTIG_284 Wuhan spiny eel influenza virus 80 13 8 CLUSTER2_Wuhan_spiny_eel_influenza_virus|14|10 PRJEB2368_P_NODE_284_length_1571_cov_81.546284_g203_i0|Wuhan_spiny_eel_influenza_virus|NR|1.26e-192|NA 14 10 PRJEB2368 284 1571 81.546284 1281.092122 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 553.0 1.2600000000000002e-192 Wuhan spiny eel influenza virus Non-phage NR PRJEB2368_P_NODE_284_length_1571_cov_81.546284_g203_i0   7XVR_A Chain A, Neuraminidase [Wuhan spiny eel influenza virus] 7XVR_A 2116483 g203 i0 67.9 1.489497136 392 126 74.9 0 304 1479 13 404 2340 553.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus         Viruses   Viruses   553.0   1.2600000000000002e-192
10000 10000 PRJEB2368_CONTIG_78|Betainfluenzavirus_influenzae|CLUSTER2_Betainfluenzavirus_influenzae|12|6 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_78|Betainfluenzavirus_influenzae PRJEB2368_CONTIG_78 Betainfluenzavirus influenzae 80 13 8 CLUSTER2_Betainfluenzavirus_influenzae|12|6 PRJEB2368_P_NODE_78_length_2413_cov_23.010943_g52_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 12 6 PRJEB2368 78 2413 23.010943 555.2540546 Betainfluenzavirus influenzae 2955465 Viruses Viruses 1646.0 0.0 Betainfluenzavirus influenzae Non-phage NTclustered PRJEB2368_P_NODE_78_length_2413_cov_23.010943_g52_i0   Influenza B virus B/Fukushima/H169/2018 viral cRNA, segment 1, nearly complete sequence gi|2278964023|dbj|LC720276.1| 11520 g52 i0 79.179 98.92457522 2387 487 99.0 9 10 2392 1 2381 238705 1646.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae   gi|2278964023|dbj|LC720276.1| Viruses Viruses Viruses Viruses 1646.0 1407.0 0.0 0.0
10002 10002 PRJEB2368_CONTIG_84|Betainfluenzavirus|CLUSTER3_Betainfluenzavirus|12|7 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_84|Betainfluenzavirus PRJEB2368_CONTIG_84 Betainfluenzavirus 80 13 8 CLUSTER3_Betainfluenzavirus|12|7 PRJEB2368_P_NODE_84_length_2374_cov_54.372700_g56_i0|Betainfluenzavirus|NTclustered|0|NA 12 7 PRJEB2368 84 2374 54.3727 1290.807898 Betainfluenzavirus 197912 Viruses Viruses 1413.0 0.0 Betainfluenzavirus Non-phage NTclustered PRJEB2368_P_NODE_84_length_2374_cov_54.372700_g56_i0   Influenza B virus (B/Beijing/76/98) polymerase (PA) gene, complete cds gi|51340768|gb|AY687392.1| 290303 g56 i0 78.428 38.43470935 2188 458 92.0 13 139 2319 2185 5 91244 1415.0 0.998586572 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Betainfluenzavirus gi|51340768|gb|AY687392.1| Viruses Viruses Viruses Viruses 1413.0 1308.0 0.0 0.0
10011 10011 PRJEB2368_CONTIG_544|Betainfluenzavirus_influenzae|CLUSTER3_Betainfluenzavirus_influenzae|12|7 Zebrafish influenza B-like virus Novel PRJEB2368_CONTIG_544|Betainfluenzavirus_influenzae PRJEB2368_CONTIG_544 Betainfluenzavirus influenzae 80 13 8 CLUSTER3_Betainfluenzavirus_influenzae|12|7 PRJEB2368_P_NODE_544_length_1151_cov_155.050269_g412_i0|Betainfluenzavirus_influenzae|NTclustered|9.55e-147|NA 12 7 PRJEB2368 544 1151 155.050269 1784.628596 Betainfluenzavirus influenzae 2955465 Viruses Viruses 534.0 9.55e-147 Betainfluenzavirus influenzae Non-phage NTclustered PRJEB2368_P_NODE_544_length_1151_cov_155.050269_g412_i0   Influenza B virus (B/Lee/1940) segment 8, complete sequence gi|8486161|ref|NC_002211.1| 518987 g412 i0 75.871 95.45264987 1119 230 96.0 35 21 1123 1096 2 109866 534.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae Influenza B virus (B/Lee/194 gi|8486161|ref|NC_002211.1| Viruses Viruses Viruses Viruses 534.0 397.0 9.55e-147 4.0999999999999995e-135

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;