RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where bioproject = "PRJEB14803" and clusterLCA_curated = "Zebrafish picornavirus 1"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish picornavirus 1 · 4 ✖

bioproject 1

  • PRJEB14803 · 4 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
3970 3970 PRJEB14803_CONTIG_11018|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJEB14803_CONTIG_11018|Cyprivirus_A PRJEB14803_CONTIG_11018 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJEB14803 11018 383 1.62069 6.2072427 Cyprivirus A 2304617 Viruses Viruses 652.0 0.0 Cyprivirus A Non-phage NTclustered PRJEB14803_P_NODE_11018_length_383_cov_1.620690_g10553_i0   TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome gi|1990739381|tpg|BK011179.1| 2563826 g10553 i0 97.389 3.075718016 383 10 100.0 0 1 383 7706 7324 1178 652.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1990739381|tpg|BK011179.1| Viruses Viruses Viruses Viruses 652.0 256.0 0.0 3.2e-76
4119 4119 PRJEB14803_CONTIG_18519|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJEB14803_CONTIG_18519|Cyprivirus_A PRJEB14803_CONTIG_18519 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJEB14803 18519 272 2.185654 5.94497888 Cyprivirus A 2304617 Viruses Viruses 470.0 5.81e-128 Cyprivirus A Non-phage NTclustered PRJEB14803_P_NODE_18519_length_272_cov_2.185654_g18053_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g18053 i0 97.794 3.0 272 6 100.0 0 1 272 6614 6343 816 470.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|2500378199|ref|NC_076245.1| Viruses Viruses Viruses Viruses 470.0 184.0 5.81e-128 1.42e-51
4217 4217 PRJEB14803_CONTIG_33134|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJEB14803_CONTIG_33134|Cyprivirus_A PRJEB14803_CONTIG_33134 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJEB14803 33134 186 1.324503 2.46357558 Cyprivirus A 2304617 Viruses Viruses 322.0 1.0999999999999999e-83 Cyprivirus A Non-phage NTclustered PRJEB14803_P_NODE_33134_length_186_cov_1.324503_g32668_i0   Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome gi|1812398529|gb|MN524064.1| 2563826 g32668 i0 97.849 3.0 186 4 100.0 0 1 186 6279 6094 558 322.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1812398529|gb|MN524064.1| Viruses Viruses Viruses Viruses 322.0 124.0 1.0999999999999999e-83 4.4999999999999995e-31
4262 4262 PRJEB14803_CONTIG_46839|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJEB14803_CONTIG_46839|Cyprivirus_A PRJEB14803_CONTIG_46839 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJEB14803 46839 151 1.37931 2.0827581 Cyprivirus A 2304617 Viruses Viruses 257.0 2.43e-64 Cyprivirus A Non-phage NTclustered PRJEB14803_P_NODE_46839_length_151_cov_1.379310_g46373_i0   Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome gi|1812398529|gb|MN524064.1| 2563826 g46373 i0 97.351 3.0 151 4 100.0 0 1 151 4820 4970 453 257.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1812398529|gb|MN524064.1| Viruses Viruses Viruses Viruses 257.0 102.0 2.43e-64 7.46e-24

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;