metadata: viruses_fish_associated_curated: 3 rows where bioproject = "PRJEB10833" and tax_family

3 rows where bioproject = "PRJEB10833" and tax_family_NTorNR = "Chuviridae"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
8078	8078	PRJEB10833_CONTIG_9434\|African_cichlid_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJEB10833_CONTIG_9434\|African_cichlid_piscichuvirus	PRJEB10833_CONTIG_9434	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJEB10833	9434	315	1.853571	5.83874865	African cichlid piscichuvirus	3065075	Viruses	Viruses	92.0	4.43e-19	African cichlid piscichuvirus	Non-phage	NR	PRJEB10833_P_NODE_9434_length_315_cov_1.853571_g8916_i0	WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus]	WLN26256.1	3065075	g8916	i0	51.8	0.80952381	85	41	81.0	0	310	56	231	315	255	92.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	African cichlid piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus	Uranotaenia lowii	African cichlid piscichuvirus	gi\|2499552039\|ref\|XM_055740911.1\|	Arthropoda	Viruses	Arthropoda	Viruses	52.8	92.0	0.029	4.43e-19
9017	9017	PRJEB10833_CONTIG_8951\|Chuviridae\|CLUSTER1_Chuvivirus\|75\|72	Chuvivirus	Endogenous or not fish-associated	PRJEB10833_CONTIG_8951\|Chuviridae	PRJEB10833_CONTIG_8951	Chuvivirus	116	110	4	CLUSTER1_Chuvivirus\|75\|72	PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0\|Chuvivirus\|NR\|1.57e-31\|NA	75	72	PRJEB10833	8951	328	1.204778	3.95167184	Chuviridae	2501952	Viruses	Viruses	145.0	1.89e-38	Chuviridae	Non-phage	NR	PRJEB10833_P_NODE_8951_length_328_cov_1.204778_g8433_i0	UVF58769.1 MAG: S protein [Salarius guttatus piscichuvirus]	UVF58769.1	2951531	g8433	i0	61.5	2.981707317	109	42	99.7	0	1	327	284	392	978	145.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae		Salarius guttatus piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus		Chuviridae			Viruses		Viruses		145.0		1.89e-38
9213	9213	PRJEB10833_CONTIG_22867\|Hardyhead_chuvirus\|CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	Salarius guttatus piscichuvirus	Endogenous or not fish-associated	PRJEB10833_CONTIG_22867\|Hardyhead_chuvirus	PRJEB10833_CONTIG_22867	Salarius guttatus piscichuvirus	67	58	5	CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0\|Salarius_guttatus_piscichuvirus\|NR\|7.17e-28\|NA	63	56	PRJEB10833	22867	156	1.644628	2.56561968	Hardyhead chuvirus	2830721	Viruses	Viruses	41.2	0.0421	Hardyhead chuvirus	Non-phage	NR	PRJEB10833_P_NODE_22867_length_156_cov_1.644628_g22348_i0	YP_010840939.1 L protein [Hardyhead chuvirus]	YP_010840939.1	2830721	g22348	i0	45.3	1.019230769	53	28	100.0	1	156	1	25	77	159	41.2	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Piscichuvirus craterocephali	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus		Hardyhead chuvirus			Viruses		Viruses		41.2		0.0421

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;