metadata: viruses_fish_associated_curated: 2 rows where Category = "Novel" and tax_genus

2 rows where Category = "Novel" and tax_genus_NTorNR = "Pemapivirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
8406	8406	PRJNA690124_CONTIG_32349\|pemapivirus_B1\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA690124_CONTIG_32349\|pemapivirus_B1	PRJNA690124_CONTIG_32349	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA690124	32349	291	1.711009	4.97903619	pemapivirus B1	2870355	Viruses	Viruses	118.0	2.12e-28	pemapivirus B1	Non-phage	NR	PRJNA690124_P_NODE_32349_length_291_cov_1.711009_g31983_i0		YP_010796385.1 polyprotein [pemapivirus B1]	YP_010796385.1	2870355	g31983	i0	58.9	0.979381443	95	39	97.9	0	290	6	2431	2525	285	118.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Pemapivirus	Pemapivirus brohepotu	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		pemapivirus B1			Viruses		Viruses		118.0		2.12e-28
8412	8412	PRJNA793147_CONTIG_43407\|Pemapivirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA793147_CONTIG_43407\|Pemapivirus	PRJNA793147_CONTIG_43407	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA793147	43407	256	1.278075	3.271872	Pemapivirus	2733280	Viruses	Viruses	96.7	4.82e-21	Pemapivirus	Non-phage	NR	PRJNA793147_P_NODE_43407_length_256_cov_1.278075_g43141_i0		DAZ91113.1 TPA_asm: polyprotein, partial [Red-eared slider pemapivirus]	DAZ91113.1	2969593	g43141	i0	55.3	5.96484375	85	34	99.6	1	256	2	512	592	1527	96.7	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Pemapivirus	Red-eared slider pemapivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Pemapivirus			Viruses		Viruses		96.7		4.82e-21

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;