RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Novel" and tax_genus_NTorNR = "Oscivirus"

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bioproject 3

tax_species_NTorNR 1

tax_genus_NTorNR 1

  • Oscivirus · 3 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

Category 1

  • Novel · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8404 8404 PRJNA352610_CONTIG_30436|Oscivirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA352610_CONTIG_30436|Oscivirus PRJNA352610_CONTIG_30436 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA352610 30436 243 0.905882 2.20129326 Oscivirus 1511780 Viruses Viruses 95.5 1.06e-20 Oscivirus Non-phage NR PRJNA352610_P_NODE_30436_length_243_cov_0.905882_g30375_i0   ADL38962.1 polyprotein [Oscivirus A2] ADL38962.1 871701 g30375 i0 57.7 2.888888889 78 33 96.3 0 1 234 2085 2162 702 95.9 0.995828989 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Oscivirus Oscivirus ahokorobi Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Oscivirus     Viruses   Viruses   95.5   1.06e-20
8407 8407 PRJNA893346_CONTIG_34993|Oscivirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA893346_CONTIG_34993|Oscivirus PRJNA893346_CONTIG_34993 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA893346 34993 248 1.76 4.3648 Oscivirus 1511780 Viruses Viruses 102.0 4.0699999999999996e-23 Oscivirus Non-phage NR PRJNA893346_P_NODE_34993_length_248_cov_1.760000_g34503_i0   ADL38962.1 polyprotein [Oscivirus A2] ADL38962.1 871701 g34503 i0 59.8 2.975806452 82 33 99.2 0 248 3 2094 2175 738 102.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Oscivirus Oscivirus ahokorobi Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Oscivirus     Viruses   Viruses   102.0   4.0699999999999996e-23
8415 8415 PRJNA335774_CONTIG_46293|Oscivirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA335774_CONTIG_46293|Oscivirus PRJNA335774_CONTIG_46293 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA335774 46293 243 0.905882 2.20129326 Oscivirus 1511780 Viruses Viruses 95.5 1.06e-20 Oscivirus Non-phage NR PRJNA335774_P_NODE_46293_length_243_cov_0.905882_g46141_i0   ADL38962.1 polyprotein [Oscivirus A2] ADL38962.1 871701 g46141 i0 57.7 2.888888889 78 33 96.3 0 1 234 2085 2162 702 95.9 0.995828989 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Oscivirus Oscivirus ahokorobi Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Oscivirus     Viruses   Viruses   95.5   1.06e-20

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;