RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Novel", tax_genus_NTorNR = "Kobuvirus" and tax_species_NTorNR = "Kobuvirus sp."

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tax_species_NTorNR 1

  • Kobuvirus sp. · 3 ✖

tax_genus_NTorNR 1

  • Kobuvirus · 3 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

Category 1

  • Novel · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8340 8340 PRJNA670521_CONTIG_5|Kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA670521_CONTIG_5|Kobuvirus PRJNA670521_CONTIG_5 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA670521 5 8668 14.62164 1267.403755 Kobuvirus 194960 Viruses Viruses 545.0 2.5399999999999997e-153 Kobuvirus Non-phage NR PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0   ULF99604.1 MAG: polyprotein, partial [Kobuvirus sp.] ULF99604.1 2094719 g3 i0 26.6 4.827411168 2338 1251 75.3 76 6913 386 310 2335 41844 548.0 0.994525547 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus sp. Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Kobuvirus     Viruses   Viruses   545.0   2.5399999999999997e-153
8370 8370 PRJNA1199330_CONTIG_3303|Kobuvirus_sp.|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1199330_CONTIG_3303|Kobuvirus_sp. PRJNA1199330_CONTIG_3303 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1199330 3303 1179 6.148282 72.48824478 Kobuvirus sp. 2094719 Viruses Viruses 73.6 7.7e-10 Kobuvirus sp. Non-phage NR PRJNA1199330_P_NODE_3303_length_1179_cov_6.148282_g2932_i0   ULF99604.1 MAG: polyprotein, partial [Kobuvirus sp.] ULF99604.1 2094719 g2932 i0 24.8 0.974554707 383 204 90.8 11 1079 9 849 1173 1149 73.6 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus sp. Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Kobuvirus sp.     Viruses   Viruses   73.6   7.7e-10
8387 8387 PRJNA1249431_CONTIG_8807|Kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1249431_CONTIG_8807|Kobuvirus PRJNA1249431_CONTIG_8807 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1249431 8807 242 0.911243 2.20520806 Kobuvirus 194960 Viruses Viruses 45.4 0.00424 Kobuvirus Non-phage NR PRJNA1249431_P_NODE_8807_length_242_cov_0.911243_g8704_i0   AVH76463.1 polyprotein, partial [Kobuvirus sp.] AVH76463.1 2094719 g8704 i0 42.5 7.97107438 73 34 88.0 3 16 228 1189 1255 1929 45.4 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus sp. Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Kobuvirus     Viruses   Viruses   45.4   0.00424

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;