RNAquarium Metadata Server
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viruses_fish_associated_curated

6 rows where Category = "Novel" and tax_genus_NTorNR = "Actinovirus"

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tax_species_NTorNR 1

tax_genus_NTorNR 1

  • Actinovirus · 6 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

Category 1

  • Novel · 6 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10375 10375 PRJNA293022_CONTIG_4345|Wenling_red_spikefish_hantavirus|CLUSTER1_Wenling_red_spikefish_hantavirus|1|1 Zebrafish cardiovascular hantavirus Novel PRJNA293022_CONTIG_4345|Wenling_red_spikefish_hantavirus PRJNA293022_CONTIG_4345 Wenling red spikefish hantavirus 6 1 6 CLUSTER1_Wenling_red_spikefish_hantavirus|1|1 PRJNA293022_P_NODE_4345_length_667_cov_1.498382_g3711_i0|Wenling_red_spikefish_hantavirus|NR|7.85e-55|NA 1 1 PRJNA293022 4345 667 1.498382 9.99420794 Wenling red spikefish hantavirus 2116435 Viruses Viruses 199.0 7.849999999999999e-55 Wenling red spikefish hantavirus Non-phage NR PRJNA293022_P_NODE_4345_length_667_cov_1.498382_g3711_i0   YP_010085034.1 L protein [Wenling red spikefish hantavirus] YP_010085034.1 2116435 g3711 i0 44.5 0.980509745 218 115 97.2 3 657 10 357 570 654 199.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Actinovirus Actinovirus triacanthodis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Bunyaviricetes;Elliovirales;Hantaviridae;Actinovirus;Zebrafish cardiovascular hantavirus   Wenling red spikefish hantavirus     Viruses   Viruses   199.0   7.849999999999999e-55
10379 10379 PRJNA293022_CONTIG_5423|Wenling_red_spikefish_hantavirus|CLUSTER2_Wenling_red_spikefish_hantavirus|1|1 Zebrafish cardiovascular hantavirus Novel PRJNA293022_CONTIG_5423|Wenling_red_spikefish_hantavirus PRJNA293022_CONTIG_5423 Wenling red spikefish hantavirus 6 1 6 CLUSTER2_Wenling_red_spikefish_hantavirus|1|1 PRJNA293022_P_NODE_5423_length_606_cov_1.764811_g4741_i0|Wenling_red_spikefish_hantavirus|NR|3.99e-58|NA 1 1 PRJNA293022 5423 606 1.764811 10.69475466 Wenling red spikefish hantavirus 2116435 Viruses Viruses 208.0 3.99e-58 Wenling red spikefish hantavirus Non-phage NR PRJNA293022_P_NODE_5423_length_606_cov_1.764811_g4741_i0   YP_010085034.1 L protein [Wenling red spikefish hantavirus] YP_010085034.1 2116435 g4741 i0 51.7 0.995049505 201 93 99.0 2 604 5 888 1085 603 208.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Actinovirus Actinovirus triacanthodis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Bunyaviricetes;Elliovirales;Hantaviridae;Actinovirus;Zebrafish cardiovascular hantavirus   Wenling red spikefish hantavirus     Viruses   Viruses   208.0   3.99e-58
10414 10414 PRJNA293022_CONTIG_18572|Wenling_red_spikefish_hantavirus|CLUSTER3_Wenling_red_spikefish_hantavirus|1|1 Zebrafish cardiovascular hantavirus Novel PRJNA293022_CONTIG_18572|Wenling_red_spikefish_hantavirus PRJNA293022_CONTIG_18572 Wenling red spikefish hantavirus 6 1 6 CLUSTER3_Wenling_red_spikefish_hantavirus|1|1 PRJNA293022_P_NODE_18572_length_331_cov_2.092199_g17835_i0|Wenling_red_spikefish_hantavirus|NR|4.39e-22|NA 1 1 PRJNA293022 18572 331 2.092199 6.92517869 Wenling red spikefish hantavirus 2116435 Viruses Viruses 100.0 4.39e-22 Wenling red spikefish hantavirus Non-phage NR PRJNA293022_P_NODE_18572_length_331_cov_2.092199_g17835_i0   YP_010085034.1 L protein [Wenling red spikefish hantavirus] YP_010085034.1 2116435 g17835 i0 49.5 0.897280967 99 50 89.7 0 331 35 701 799 297 100.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Actinovirus Actinovirus triacanthodis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Bunyaviricetes;Elliovirales;Hantaviridae;Actinovirus;Zebrafish cardiovascular hantavirus   Wenling red spikefish hantavirus     Viruses   Viruses   100.0   4.39e-22
10428 10428 PRJNA293022_CONTIG_21888|Wenling_red_spikefish_hantavirus|CLUSTER4_Wenling_red_spikefish_hantavirus|1|1 Zebrafish cardiovascular hantavirus Novel PRJNA293022_CONTIG_21888|Wenling_red_spikefish_hantavirus PRJNA293022_CONTIG_21888 Wenling red spikefish hantavirus 6 1 6 CLUSTER4_Wenling_red_spikefish_hantavirus|1|1 PRJNA293022_P_NODE_21888_length_304_cov_1.552941_g21151_i0|Wenling_red_spikefish_hantavirus|NR|2.75e-06|NA 1 1 PRJNA293022 21888 304 1.552941 4.72094064 Wenling red spikefish hantavirus 2116435 Viruses Viruses 55.5 2.75e-06 Wenling red spikefish hantavirus Non-phage NR PRJNA293022_P_NODE_21888_length_304_cov_1.552941_g21151_i0   YP_010085034.1 L protein [Wenling red spikefish hantavirus] YP_010085034.1 2116435 g21151 i0 33.8 1.411184211 71 46 69.1 1 286 77 2015 2085 429 55.5 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Actinovirus Actinovirus triacanthodis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Bunyaviricetes;Elliovirales;Hantaviridae;Actinovirus;Zebrafish cardiovascular hantavirus   Wenling red spikefish hantavirus     Viruses   Viruses   55.5   2.75e-06
10443 10443 PRJNA293022_CONTIG_31609|Wenling_red_spikefish_hantavirus|CLUSTER5_Wenling_red_spikefish_hantavirus|1|1 Zebrafish cardiovascular hantavirus Novel PRJNA293022_CONTIG_31609|Wenling_red_spikefish_hantavirus PRJNA293022_CONTIG_31609 Wenling red spikefish hantavirus 6 1 6 CLUSTER5_Wenling_red_spikefish_hantavirus|1|1 PRJNA293022_P_NODE_31609_length_249_cov_1.780000_g30872_i0|Wenling_red_spikefish_hantavirus|NR|1.24e-08|NA 1 1 PRJNA293022 31609 249 1.78 4.4322 Wenling red spikefish hantavirus 2116435 Viruses Viruses 61.2 1.24e-08 Wenling red spikefish hantavirus Non-phage NR PRJNA293022_P_NODE_31609_length_249_cov_1.780000_g30872_i0   YP_010085034.1 L protein [Wenling red spikefish hantavirus] YP_010085034.1 2116435 g30872 i0 35.4 0.987951807 82 53 98.8 0 3 248 1567 1648 246 61.2 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Actinovirus Actinovirus triacanthodis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Bunyaviricetes;Elliovirales;Hantaviridae;Actinovirus;Zebrafish cardiovascular hantavirus   Wenling red spikefish hantavirus     Viruses   Viruses   61.2   1.24e-08
10470 10470 PRJNA293022_CONTIG_52746|Wenling_red_spikefish_hantavirus|CLUSTER6_Wenling_red_spikefish_hantavirus|1|1 Zebrafish cardiovascular hantavirus Novel PRJNA293022_CONTIG_52746|Wenling_red_spikefish_hantavirus PRJNA293022_CONTIG_52746 Wenling red spikefish hantavirus 6 1 6 CLUSTER6_Wenling_red_spikefish_hantavirus|1|1 PRJNA293022_P_NODE_52746_length_192_cov_1.090909_g52009_i0|Wenling_red_spikefish_hantavirus|NR|0.0147|NA 1 1 PRJNA293022 52746 192 1.090909 2.09454528 Wenling red spikefish hantavirus 2116435 Viruses Viruses 43.1 0.0147 Wenling red spikefish hantavirus Non-phage NR PRJNA293022_P_NODE_52746_length_192_cov_1.090909_g52009_i0   YP_010085034.1 L protein [Wenling red spikefish hantavirus] YP_010085034.1 2116435 g52009 i0 43.3 0.9375 60 34 93.8 0 10 189 1498 1557 180 43.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Actinovirus Actinovirus triacanthodis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Bunyaviricetes;Elliovirales;Hantaviridae;Actinovirus;Zebrafish cardiovascular hantavirus   Wenling red spikefish hantavirus     Viruses   Viruses   43.1   0.0147

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;