RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where Category = "Novel", clusterLCA_curated = "Zebrafish gut calicivirus" and tax_species_NTorNR = "Beihai conger calicivirus"

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bioproject 2

tax_species_NTorNR 1

  • Beihai conger calicivirus · 2 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish gut calicivirus · 2 ✖

Category 1

  • Novel · 2 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9509 9509 PRJNA595113_CONTIG_22286|Beihai_conger_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA595113_CONTIG_22286|Beihai_conger_calicivirus PRJNA595113_CONTIG_22286 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA595113 22286 167 0.864407 1.44355969 Beihai conger calicivirus 2116161 Viruses Viruses 47.4 0.000314 Beihai conger calicivirus Non-phage NR PRJNA595113_S_NODE_22286_length_167_cov_0.864407_g22139_i0   AVM87195.1 polyprotein [Beihai conger calicivirus] AVM87195.1 2116161 g22139 i0 50.9 0.988023952 55 24 97.0 2 4 165 1078 1130 165 47.4 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Beihai conger calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Beihai conger calicivirus     Viruses   Viruses   47.4   0.000314
9520 9520 PRJNA599026_CONTIG_37307|Beihai_conger_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA599026_CONTIG_37307|Beihai_conger_calicivirus PRJNA599026_CONTIG_37307 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA599026 37307 186 2.007299 3.73357614 Beihai conger calicivirus 2116161 Viruses Viruses 92.8 3.99e-20 Beihai conger calicivirus Non-phage NR PRJNA599026_S_NODE_37307_length_186_cov_2.007299_g36851_i0   AVM87195.1 polyprotein [Beihai conger calicivirus] AVM87195.1 2116161 g36851 i0 70.7 4.758064516 58 17 93.5 0 184 11 1713 1770 885 92.8 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Beihai conger calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Beihai conger calicivirus     Viruses   Viruses   92.8   3.99e-20

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;