metadata: viruses_fish_associated_curated: 4 rows where Category = "Novel", bioproject = "PRJNA851939" and clusterLCA

4 rows where Category = "Novel", bioproject = "PRJNA851939" and clusterLCA_curated = "Zebrafish rhabdo-like virus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
9808	9808	PRJNA851939_CONTIG_787\|Salmovirus_WFRC1\|CLUSTER1_Salmovirus_WFRC1\|20\|6	Zebrafish rhabdo-like virus	Novel	PRJNA851939_CONTIG_787\|Salmovirus_WFRC1	PRJNA851939_CONTIG_787	Salmovirus WFRC1	37	9	6	CLUSTER1_Salmovirus_WFRC1\|20\|6	PRJEB2368_P_NODE_55_length_2750_cov_4.192407_g36_i0\|Salmovirus_WFRC1\|NR\|7.9e-107\|NA	20	6	PRJNA851939	787	442	1.533875	6.7797275	Salmovirus WFRC1	1981916	Viruses	Viruses	193.0	2.67e-54	Salmovirus WFRC1	Non-phage	NR	PRJNA851939_P_NODE_787_length_442_cov_1.533875_g735_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g735	i0	60.0	0.984162896	145	58	98.4	0	441	7	88	232	435	193.0	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	193.0	2.67e-54
9809	9809	PRJNA851939_CONTIG_1253\|Salmovirus_WFRC1\|CLUSTER1_Salmovirus_WFRC1\|20\|6	Zebrafish rhabdo-like virus	Novel	PRJNA851939_CONTIG_1253\|Salmovirus_WFRC1	PRJNA851939_CONTIG_1253	Salmovirus WFRC1	37	9	6	CLUSTER1_Salmovirus_WFRC1\|20\|6	PRJEB2368_P_NODE_55_length_2750_cov_4.192407_g36_i0\|Salmovirus_WFRC1\|NR\|7.9e-107\|NA	20	6	PRJNA851939	1253	342	1.717472	5.87375424	Salmovirus WFRC1	1981916	Viruses	Viruses	104.0	1.73e-23	Salmovirus WFRC1	Non-phage	NR	PRJNA851939_P_NODE_1253_length_342_cov_1.717472_g1201_i0	YP_009361865.1 protease [Salmovirus WFRC1]	YP_009361865.1	1981916	g1201	i0	51.0	0.894736842	102	49	88.6	1	303	1	331	432	306	104.0	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	104.0	1.73e-23
9810	9810	PRJNA851939_CONTIG_1431\|Salmovirus_WFRC1\|CLUSTER1_Salmovirus_WFRC1\|20\|6	Zebrafish rhabdo-like virus	Novel	PRJNA851939_CONTIG_1431\|Salmovirus_WFRC1	PRJNA851939_CONTIG_1431	Salmovirus WFRC1	37	9	6	CLUSTER1_Salmovirus_WFRC1\|20\|6	PRJEB2368_P_NODE_55_length_2750_cov_4.192407_g36_i0\|Salmovirus_WFRC1\|NR\|7.9e-107\|NA	20	6	PRJNA851939	1431	322	1.012048	3.25879456	Salmovirus WFRC1	1981916	Viruses	Viruses	75.9	2.25e-13	Salmovirus WFRC1	Non-phage	NR	PRJNA851939_P_NODE_1431_length_322_cov_1.012048_g1379_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g1379	i0	43.6	0.875776398	94	51	87.6	1	40	321	2	93	282	75.9	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	75.9	2.25e-13
10079	10079	PRJNA851939_CONTIG_374\|Salmovirus_WFRC1\|CLUSTER2_Salmovirus_WFRC1\|10\|5	Zebrafish rhabdo-like virus	Novel	PRJNA851939_CONTIG_374\|Salmovirus_WFRC1	PRJNA851939_CONTIG_374	Salmovirus WFRC1	37	9	6	CLUSTER2_Salmovirus_WFRC1\|10\|5	PRJNA906165_P_NODE_155_length_1461_cov_3.291066_g112_i0\|Salmovirus_WFRC1\|NR\|7.69e-84\|NA	10	5	PRJNA851939	374	663	1.344068	8.91117084	Salmovirus WFRC1	1981916	Viruses	Viruses	214.0	9.65e-61	Salmovirus WFRC1	Non-phage	NR	PRJNA851939_P_NODE_374_length_663_cov_1.344068_g322_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g322	i0	56.4	0.914027149	202	84	90.0	2	659	63	462	662	606	214.0	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	214.0	9.65e-61

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;