RNAquarium Metadata Server
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viruses_fish_associated_curated

8 rows where Category = "Novel" and bioproject = "PRJNA800053"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

  • PRJNA800053 · 8 ✖

Category 1

  • Novel · 8 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4798 4798 PRJNA800053_CONTIG_13910|Carp_edema_virus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_13910|Carp_edema_virus PRJNA800053_CONTIG_13910 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA800053 13910 273 1.54 4.2042 Carp edema virus 1653087 Viruses Viruses 129.0 1.4900000000000002e-32 Carp edema virus Non-phage NR PRJNA800053_P_NODE_13910_length_273_cov_1.540000_g13746_i0   BCT22642.1 trimeric virion coat protein [Carp edema virus] BCT22642.1 1653087 g13746 i0 58.2 1.0 91 38 100.0 0 1 273 73 163 273 129.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   129.0   1.4900000000000002e-32
5444 5444 PRJNA800053_CONTIG_21604|Carp_edema_virus|CLUSTER2_Carp_edema_virus|553|75 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_21604|Carp_edema_virus PRJNA800053_CONTIG_21604 Carp edema virus 4680 143 36 CLUSTER2_Carp_edema_virus|553|75 LC613089_1_Carp_edema_virus_FTI2020_DNA_complete_genome 552 75 PRJNA800053 21604 244 1.426901 3.48163844 Carp edema virus 1653087 Viruses Viruses 64.7 5.22e-10 Carp edema virus Non-phage NR PRJNA800053_P_NODE_21604_length_244_cov_1.426901_g21440_i0   BCT22608.1 poly(A)-polymerase small subunit VP39 PAPS [Carp edema virus] BCT22608.1 1653087 g21440 i0 53.8 0.639344262 52 24 63.9 0 187 32 10 61 156 64.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   64.7   5.22e-10
5819 5819 PRJNA800053_CONTIG_17350|Carp_edema_virus|CLUSTER3_Carp_edema_virus|359|69 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_17350|Carp_edema_virus PRJNA800053_CONTIG_17350 Carp edema virus 4680 143 36 CLUSTER3_Carp_edema_virus|359|69 PRJNA318414_P_NODE_2_length_28050_cov_65.213304_g1_i0|Carp_edema_virus|NR|0|NA 358 69 PRJNA800053 17350 251 1.011236 2.53820236 Carp edema virus 1653087 Viruses Viruses 52.8 1.24e-05 Carp edema virus Non-phage NR PRJNA800053_P_NODE_17350_length_251_cov_1.011236_g17186_i0   BCT22717.1 B22R family protein [Carp edema virus] BCT22717.1 1653087 g17186 i0 36.7 0.944223108 79 40 89.6 3 230 6 999 1071 237 52.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   52.8   1.24e-05
6175 6175 PRJNA800053_CONTIG_21742|Carp_edema_virus|CLUSTER4_Carp_edema_virus|348|78 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_21742|Carp_edema_virus PRJNA800053_CONTIG_21742 Carp edema virus 4680 143 36 CLUSTER4_Carp_edema_virus|348|78 PRJNA1075480_S_NODE_1_length_24682_cov_102.472876_g0_i0|Carp_edema_virus|NR|2.31e-98|NA 331 77 PRJNA800053 21742 244 0.900585 2.1974274 Carp edema virus 1653087 Viruses Viruses 55.1 1.65e-06 Carp edema virus Non-phage NR PRJNA800053_P_NODE_21742_length_244_cov_0.900585_g21578_i0   BCT22585.1 hypothetical protein [Carp edema virus] BCT22585.1 1653087 g21578 i0 34.9 1.020491803 83 51 98.4 1 4 243 132 214 249 55.1 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   55.1   1.65e-06
6655 6655 PRJNA800053_CONTIG_9304|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_9304|Carp_edema_virus PRJNA800053_CONTIG_9304 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA800053 9304 316 2.288066 7.23028856 Carp edema virus 1653087 Viruses Viruses 73.2 1.21e-12 Carp edema virus Non-phage NR PRJNA800053_P_NODE_9304_length_316_cov_2.288066_g9140_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g9140 i0 39.2 0.96835443 102 61 96.8 1 314 9 179 279 306 73.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   73.2   1.21e-12
7589 7589 PRJNA800053_CONTIG_21278|Carp_edema_virus|CLUSTER11_Carp_edema_virus|185|63 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_21278|Carp_edema_virus PRJNA800053_CONTIG_21278 Carp edema virus 4680 143 36 CLUSTER11_Carp_edema_virus|185|63 PRJNA318414_P_NODE_13_length_11789_cov_179.829762_g10_i0|Carp_edema_virus|NR|4.62999999998593e-293|NA 184 63 PRJNA800053 21278 245 0.895349 2.19360505 Carp edema virus 1653087 Viruses Viruses 86.7 1.34e-17 Carp edema virus Non-phage NR PRJNA800053_P_NODE_21278_length_245_cov_0.895349_g21114_i0   BCT22731.1 mRNA capping enzyme large subunit [Carp edema virus] BCT22731.1 1653087 g21114 i0 51.3 0.955102041 78 37 95.5 1 9 242 293 369 234 86.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   86.7   1.34e-17
7901 7901 PRJNA800053_CONTIG_1791|Carp_edema_virus|CLUSTER13_Carp_edema_virus|165|64 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_1791|Carp_edema_virus PRJNA800053_CONTIG_1791 Carp edema virus 4680 143 36 CLUSTER13_Carp_edema_virus|165|64 PRJNA1075480_S_NODE_19_length_10478_cov_35.577415_g8_i0|Carp_edema_virus|NR|1.04e-246|NA 165 64 PRJNA800053 1791 625 1.692029 10.57518125 Carp edema virus 1653087 Viruses Viruses 78.6 2.91e-14 Carp edema virus Non-phage NR PRJNA800053_P_NODE_1791_length_625_cov_1.692029_g1637_i0   BCT22600.1 hypothetical protein [Carp edema virus] BCT22600.1 1653087 g1637 i0 36.1 0.6384 133 81 62.9 3 417 25 47 177 399 78.6 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus Ananas comosus Carp edema virus gi|1885270526|emb|LR862145.1| Plants Viruses Plants Viruses 54.7 78.6 0.017 2.91e-14
8722 8722 PRJNA800053_CONTIG_8368|Carp_edema_virus|CLUSTER16_Carp_edema_virus|89|60 Zebrafish jaw poxvirus Novel PRJNA800053_CONTIG_8368|Carp_edema_virus PRJNA800053_CONTIG_8368 Carp edema virus 4680 143 36 CLUSTER16_Carp_edema_virus|89|60 PRJNA318414_P_NODE_16_length_10532_cov_251.265543_g13_i0|Carp_edema_virus|NR|5.62e-42|NA 79 59 PRJNA800053 8368 330 2.478599 8.1793767 Carp edema virus 1653087 Viruses Viruses 66.2 7.35e-11 Carp edema virus Non-phage NR PRJNA800053_P_NODE_8368_length_330_cov_2.478599_g8204_i0   BCT22744.1 hypothetical protein [Carp edema virus] BCT22744.1 1653087 g8204 i0 63.5 0.472727273 52 19 47.3 0 328 173 4 55 156 66.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   66.2   7.35e-11

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;