RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where Category = "Novel", bioproject = "PRJNA776830" and clusterLCA_curated = "Zebrafish jaw poxvirus"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw poxvirus · 2 ✖

bioproject 1

  • PRJNA776830 · 2 ✖

Category 1

  • Novel · 2 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
6882 6882 PRJNA776830_CONTIG_18264|Carp_edema_virus|CLUSTER7_Carp_edema_virus|191|60 Zebrafish jaw poxvirus Novel PRJNA776830_CONTIG_18264|Carp_edema_virus PRJNA776830_CONTIG_18264 Carp edema virus 4680 143 36 CLUSTER7_Carp_edema_virus|191|60 PRJNA318414_P_NODE_4_length_21553_cov_145.486805_g3_i0|Carp_edema_virus|NR|0|NA 184 57 PRJNA776830 18264 360 1.271777 4.5783972 Carp edema virus 1653087 Viruses Viruses 48.9 0.000105 Carp edema virus Non-phage NR PRJNA776830_P_NODE_18264_length_360_cov_1.271777_g17999_i0   BCT22656.1 hypothetical protein [Carp edema virus] BCT22656.1 1653087 g17999 i0 49.0 0.425 51 23 41.7 2 320 171 7 55 153 48.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   48.9   0.000105
7267 7267 PRJNA776830_CONTIG_49955|Carp_edema_virus|CLUSTER9_Carp_edema_virus|189|53 Zebrafish jaw poxvirus Novel PRJNA776830_CONTIG_49955|Carp_edema_virus PRJNA776830_CONTIG_49955 Carp edema virus 4680 143 36 CLUSTER9_Carp_edema_virus|189|53 PRJNA1075480_S_NODE_36_length_9686_cov_68.302923_g23_i0|Carp_edema_virus|NR|9.15e-292|NA 188 53 PRJNA776830 49955 241 0.916667 2.20916747 Carp edema virus 1653087 Viruses Viruses 86.7 5.04e-18 Carp edema virus Non-phage NR PRJNA776830_P_NODE_49955_length_241_cov_0.916667_g49690_i0   BCT22694.1 mRNA capping enzyme small subunit [Carp edema virus] BCT22694.1 1653087 g49690 i0 52.5 0.995850622 80 38 99.6 0 241 2 186 265 240 86.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   86.7   5.04e-18

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;