metadata: viruses_fish_associated_curated: 3 rows where Category = "Novel", bioproject = "PRJNA643700" and clusterLCA

3 rows where Category = "Novel", bioproject = "PRJNA643700" and clusterLCA_curated = "Zebrafish rhabdo-like virus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
10229	10229	PRJNA643700_CONTIG_256698\|Salmovirus_WFRC1\|CLUSTER3_Salmovirus_WFRC1\|3\|3	Zebrafish rhabdo-like virus	Novel	PRJNA643700_CONTIG_256698\|Salmovirus_WFRC1	PRJNA643700_CONTIG_256698	Salmovirus WFRC1	37	9	6	CLUSTER3_Salmovirus_WFRC1\|3\|3	PRJNA293022_P_NODE_12374_length_406_cov_2.389356_g11637_i0\|Salmovirus_WFRC1\|NR\|2.65e-45\|NA	3	3	PRJNA643700	256698	235	1.430108	3.3607538	Salmovirus WFRC1	1981916	Viruses	Viruses	95.5	9.170000000000001e-21	Salmovirus WFRC1	Non-phage	NR	PRJNA643700_P_NODE_256698_length_235_cov_1.430108_g255142_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g255142	i0	51.3	0.995744681	78	37	99.6	1	1	234	151	227	234	95.5	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	95.5	9.170000000000001e-21
10275	10275	PRJNA643700_CONTIG_228661\|Salmovirus_WFRC1\|CLUSTER4_Salmovirus_WFRC1\|2\|2	Zebrafish rhabdo-like virus	Novel	PRJNA643700_CONTIG_228661\|Salmovirus_WFRC1	PRJNA643700_CONTIG_228661	Salmovirus WFRC1	37	9	6	CLUSTER4_Salmovirus_WFRC1\|2\|2	PRJNA293022_P_NODE_2483_length_847_cov_2.357143_g2015_i0\|Salmovirus_WFRC1\|NR\|4.69e-17\|NA	2	2	PRJNA643700	228661	255	0.873786	2.2281543	Salmovirus WFRC1	1981916	Viruses	Viruses	92.8	1.08e-19	Salmovirus WFRC1	Non-phage	NR	PRJNA643700_P_NODE_228661_length_255_cov_0.873786_g227105_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g227105	i0	51.8	1.0	85	40	100.0	1	255	1	250	333	255	92.8	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	92.8	1.08e-19
10437	10437	PRJNA643700_CONTIG_27336\|Salmovirus_WFRC1\|CLUSTER5_Salmovirus_WFRC1\|1\|1	Zebrafish rhabdo-like virus	Novel	PRJNA643700_CONTIG_27336\|Salmovirus_WFRC1	PRJNA643700_CONTIG_27336	Salmovirus WFRC1	37	9	6	CLUSTER5_Salmovirus_WFRC1\|1\|1	PRJNA643700_P_NODE_27336_length_757_cov_2.539548_g26155_i0\|Salmovirus_WFRC1\|NR\|2.09e-20\|NA	1	1	PRJNA643700	27336	757	2.539548	19.22437836	Salmovirus WFRC1	1981916	Viruses	Viruses	101.0	2.09e-20	Salmovirus WFRC1	Non-phage	NR	PRJNA643700_P_NODE_27336_length_757_cov_2.539548_g26155_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g26155	i0	42.7	0.519154557	131	68	51.5	2	392	3	2	126	393	101.0	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	101.0	2.09e-20

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;