RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

viruses_fish_associated_curated

9 rows where Category = "Novel" and bioproject = "PRJNA637328"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

  • PRJNA637328 · 9 ✖

Category 1

  • Novel · 9 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
5770 5770 PRJNA637328_CONTIG_8169|Carp_edema_virus|CLUSTER3_Carp_edema_virus|359|69 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_8169|Carp_edema_virus PRJNA637328_CONTIG_8169 Carp edema virus 4680 143 36 CLUSTER3_Carp_edema_virus|359|69 PRJNA318414_P_NODE_2_length_28050_cov_65.213304_g1_i0|Carp_edema_virus|NR|0|NA 358 69 PRJNA637328 8169 321 1.301471 4.17772191 Carp edema virus 1653087 Viruses Viruses 88.2 1.06e-17 Carp edema virus Non-phage NR PRJNA637328_P_NODE_8169_length_321_cov_1.301471_g7694_i0   BCT22717.1 B22R family protein [Carp edema virus] BCT22717.1 1653087 g7694 i0 38.7 0.990654206 106 65 99.1 0 2 319 1059 1164 318 88.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   88.2   1.06e-17
5779 5779 PRJNA637328_CONTIG_9430|Carp_edema_virus|CLUSTER3_Carp_edema_virus|359|69 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_9430|Carp_edema_virus PRJNA637328_CONTIG_9430 Carp edema virus 4680 143 36 CLUSTER3_Carp_edema_virus|359|69 PRJNA318414_P_NODE_2_length_28050_cov_65.213304_g1_i0|Carp_edema_virus|NR|0|NA 358 69 PRJNA637328 9430 301 1.214286 3.65500086 Carp edema virus 1653087 Viruses Viruses 159.0 9.05e-43 Carp edema virus Non-phage NR PRJNA637328_P_NODE_9430_length_301_cov_1.214286_g8955_i0   BCT22721.1 RNA polymerase subunit RPO147 [Carp edema virus] BCT22721.1 1653087 g8955 i0 76.0 0.996677741 100 24 99.7 0 300 1 646 745 300 159.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   159.0   9.05e-43
6152 6152 PRJNA637328_CONTIG_14150|Carp_edema_virus|CLUSTER4_Carp_edema_virus|348|78 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_14150|Carp_edema_virus PRJNA637328_CONTIG_14150 Carp edema virus 4680 143 36 CLUSTER4_Carp_edema_virus|348|78 PRJNA1075480_S_NODE_1_length_24682_cov_102.472876_g0_i0|Carp_edema_virus|NR|2.31e-98|NA 331 77 PRJNA637328 14150 263 1.429907 3.76065541 Carp edema virus 1653087 Viruses Viruses 42.7 0.0383 Carp edema virus Non-phage NR PRJNA637328_P_NODE_14150_length_263_cov_1.429907_g13673_i0   BCT22566.1 hypothetical protein [Carp edema virus] BCT22566.1 1653087 g13673 i0 37.5 0.730038023 64 37 69.6 1 217 35 13 76 192 42.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   42.7   0.0383
6542 6542 PRJNA637328_CONTIG_624|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_624|Carp_edema_virus PRJNA637328_CONTIG_624 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA637328 624 592 4.317117 25.55733264 Carp edema virus 1653087 Viruses Viruses 107.0 5.35e-24 Carp edema virus Non-phage NR PRJNA637328_S_NODE_624_length_592_cov_4.317117_g560_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g560 i0 38.0 0.932432432 184 108 91.2 4 49 588 3 184 552 107.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   107.0   5.35e-24
6556 6556 PRJNA637328_CONTIG_1042|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_1042|Carp_edema_virus PRJNA637328_CONTIG_1042 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA637328 1042 938 3.632171 34.06976398 Carp edema virus 1653087 Viruses Viruses 167.0 2.26e-45 Carp edema virus Non-phage NR PRJNA637328_P_NODE_1042_length_938_cov_3.632171_g729_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g729 i0 37.5 0.885927505 277 166 87.3 5 819 1 3 276 831 167.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   167.0   2.26e-45
7579 7579 PRJNA637328_CONTIG_17499|Carp_edema_virus|CLUSTER11_Carp_edema_virus|185|63 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_17499|Carp_edema_virus PRJNA637328_CONTIG_17499 Carp edema virus 4680 143 36 CLUSTER11_Carp_edema_virus|185|63 PRJNA318414_P_NODE_13_length_11789_cov_179.829762_g10_i0|Carp_edema_virus|NR|4.62999999998593e-293|NA 184 63 PRJNA637328 17499 248 0.929648 2.30552704 Carp edema virus 1653087 Viruses Viruses 119.0 3.34e-29 Carp edema virus Non-phage NR PRJNA637328_P_NODE_17499_length_248_cov_0.929648_g17022_i0   BCT22731.1 mRNA capping enzyme large subunit [Carp edema virus] BCT22731.1 1653087 g17022 i0 74.4 0.991935484 82 21 99.2 0 248 3 746 827 246 119.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   119.0   3.34e-29
7951 7951 PRJNA637328_CONTIG_11597|Carp_edema_virus|CLUSTER13_Carp_edema_virus|165|64 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_11597|Carp_edema_virus PRJNA637328_CONTIG_11597 Carp edema virus 4680 143 36 CLUSTER13_Carp_edema_virus|165|64 PRJNA1075480_S_NODE_19_length_10478_cov_35.577415_g8_i0|Carp_edema_virus|NR|1.04e-246|NA 165 64 PRJNA637328 11597 280 1.627706 4.5575768 Carp edema virus 1653087 Viruses Viruses 55.8 4.72e-07 Carp edema virus Non-phage NR PRJNA637328_P_NODE_11597_length_280_cov_1.627706_g11121_i0   BCT22600.1 hypothetical protein [Carp edema virus] BCT22600.1 1653087 g11121 i0 34.0 1.007142857 94 59 98.6 2 280 5 48 140 282 55.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   55.8   4.72e-07
8748 8748 PRJNA637328_CONTIG_20853|Carp_edema_virus|CLUSTER17_Carp_edema_virus|89|39 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_20853|Carp_edema_virus PRJNA637328_CONTIG_20853 Carp edema virus 4680 143 36 CLUSTER17_Carp_edema_virus|89|39 PRJNA854078_P_NODE_51_length_3466_cov_13.696729_g37_i0|Carp_edema_virus|NR|4.02e-76|NA 89 39 PRJNA637328 20853 228 2.01676 4.5982128 Carp edema virus 1653087 Viruses Viruses 46.6 0.00134 Carp edema virus Non-phage NR PRJNA637328_P_NODE_20853_length_228_cov_2.016760_g20376_i0   BCT22763.1 putative glycylpeptide n-tetradecanoyltransferase [Carp edema virus] BCT22763.1 1653087 g20376 i0 50.0 0.631578947 48 21 63.2 1 144 1 37 81 144 46.6 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   46.6   0.00134
9283 9283 PRJNA637328_CONTIG_2190|Carp_edema_virus|CLUSTER23_Carp_edema_virus|62|54 Zebrafish jaw poxvirus Novel PRJNA637328_CONTIG_2190|Carp_edema_virus PRJNA637328_CONTIG_2190 Carp edema virus 4680 143 36 CLUSTER23_Carp_edema_virus|62|54 PRJNA318414_P_NODE_26_length_7203_cov_323.641065_g21_i0|Carp_edema_virus|NR|1.66e-43|NA 57 54 PRJNA637328 2190 618 2.226714 13.76109252 Carp edema virus 1653087 Viruses Viruses 124.0 1.76e-30 Carp edema virus Non-phage NR PRJNA637328_P_NODE_2190_length_618_cov_2.226714_g1778_i0   BCT22575.1 thymidine kinase [Carp edema virus] BCT22575.1 1653087 g1778 i0 40.1 0.810679612 167 95 79.6 2 616 125 136 300 501 124.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   124.0   1.76e-30

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;