RNAquarium Metadata Server
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viruses_fish_associated_curated

5 rows where Category = "Novel", bioproject = "PRJNA602594" and tax_genus_NTorNR = "Betainfluenzavirus"

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tax_species_NTorNR 1

tax_genus_NTorNR 1

  • Betainfluenzavirus · 5 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

  • PRJNA602594 · 5 ✖

Category 1

  • Novel · 5 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9859 9859 PRJNA602594_CONTIG_412|Betainfluenzavirus|CLUSTER1_Betainfluenzavirus|18|9 Zebrafish influenza B-like virus Novel PRJNA602594_CONTIG_412|Betainfluenzavirus PRJNA602594_CONTIG_412 Betainfluenzavirus 80 13 8 CLUSTER1_Betainfluenzavirus|18|9 PRJEB2368_P_NODE_159_length_1879_cov_149.901737_g111_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 18 9 PRJNA602594 412 1746 5.310221 92.71645866 Betainfluenzavirus 197912 Viruses Viruses 974.0 0.0 Betainfluenzavirus Non-phage NTclustered PRJNA602594_P_NODE_412_length_1746_cov_5.310221_g314_i0   Influenza B virus (B/Rhode Island/34/2023) segment 5 nucleoprotein (NP) gene, complete cds gi|2675045799|gb|PP332727.1| 11520 g314 i0 78.567 85.55211913 1493 308 85.0 12 255 1742 245 1730 149374 979.0 0.994892748 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Influenza B virus gi|2675045799|gb|PP332727.1| Viruses Viruses Viruses Viruses 974.0 845.0 0.0 2.05e-291
9906 9906 PRJNA602594_CONTIG_1415|Betainfluenzavirus_influenzae|CLUSTER1_Betainfluenzavirus_influenzae|15|8 Zebrafish influenza B-like virus Novel PRJNA602594_CONTIG_1415|Betainfluenzavirus_influenzae PRJNA602594_CONTIG_1415 Betainfluenzavirus influenzae 80 13 8 CLUSTER1_Betainfluenzavirus_influenzae|15|8 PRJNA897077_P_NODE_539_length_1214_cov_128.316389_g477_i0|Betainfluenzavirus|NTclustered|0|NA 15 8 PRJNA602594 1415 1076 4.79661 51.6115236 Betainfluenzavirus influenzae 2955465 Viruses Viruses 697.0 0.0 Betainfluenzavirus influenzae Non-phage NTclustered PRJNA602594_P_NODE_1415_length_1076_cov_4.796610_g1201_i0   Influenza B virus (B/Michigan/1/1971) segment 7 matrix protein 1 (M1) and BM2 protein (BM2) genes, complete cds gi|2413738133|gb|OQ034387.1| 11520 g1201 i0 81.71 78.03717472 842 148 78.0 6 237 1075 839 1 83968 697.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae Influenza B virus (B/Lee/194 gi|2413738133|gb|OQ034387.1| Viruses Viruses Viruses Viruses 697.0 439.0 0.0 9.4e-153
10020 10020 PRJNA602594_CONTIG_1367|Betainfluenzavirus|CLUSTER3_Betainfluenzavirus_influenzae|12|7 Zebrafish influenza B-like virus Novel PRJNA602594_CONTIG_1367|Betainfluenzavirus PRJNA602594_CONTIG_1367 Betainfluenzavirus influenzae 80 13 8 CLUSTER3_Betainfluenzavirus_influenzae|12|7 PRJEB2368_P_NODE_544_length_1151_cov_155.050269_g412_i0|Betainfluenzavirus_influenzae|NTclustered|9.55e-147|NA 12 7 PRJNA602594 1367 1091 5.361493 58.49388863 Betainfluenzavirus 197912 Viruses Viruses 496.0 4.26e-135 Betainfluenzavirus Non-phage NTclustered PRJNA602594_P_NODE_1367_length_1091_cov_5.361493_g1156_i0   Influenza B virus (B/USA/21/2018) segment 8 nuclear export protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds gi|2070683692|gb|MZ604012.1| 11520 g1156 i0 75.473 98.03299725 1109 222 99.0 36 1 1087 2 1082 106954 501.0 0.99001996 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Influenza B virus (B/Lee/194 gi|2070683692|gb|MZ604012.1| Viruses Viruses Viruses Viruses 496.0 391.0 4.26e-135 3.7300000000000004e-133
10030 10030 PRJNA602594_CONTIG_11560|Betainfluenzavirus_influenzae|CLUSTER2_Betainfluenzavirus_influenzae|12|6 Zebrafish influenza B-like virus Novel PRJNA602594_CONTIG_11560|Betainfluenzavirus_influenzae PRJNA602594_CONTIG_11560 Betainfluenzavirus influenzae 80 13 8 CLUSTER2_Betainfluenzavirus_influenzae|12|6 PRJEB2368_P_NODE_78_length_2413_cov_23.010943_g52_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 12 6 PRJNA602594 11560 375 2.506623 9.39983625 Betainfluenzavirus influenzae 2955465 Viruses Viruses 252.0 3.28e-62 Betainfluenzavirus influenzae Non-phage NTclustered PRJNA602594_P_NODE_11560_length_375_cov_2.506623_g11262_i0   Influenza B virus (B/Pennsylvania/19/2024) segment 2 polymerase PB2 (PB2) gene, complete cds gi|2740222407|gb|PP881847.1| 11520 g11262 i0 78.989 100.272 376 73 99.0 6 3 375 1018 1390 37602 252.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae Betainfluenzavirus gi|2740222407|gb|PP881847.1| Viruses Viruses Viruses Viruses 252.0 238.0 3.28e-62 6.450000000000001e-73
10036 10036 PRJNA602594_CONTIG_16965|Betainfluenzavirus_influenzae|CLUSTER3_Betainfluenzavirus|12|7 Zebrafish influenza B-like virus Novel PRJNA602594_CONTIG_16965|Betainfluenzavirus_influenzae PRJNA602594_CONTIG_16965 Betainfluenzavirus 80 13 8 CLUSTER3_Betainfluenzavirus|12|7 PRJEB2368_P_NODE_84_length_2374_cov_54.372700_g56_i0|Betainfluenzavirus|NTclustered|0|NA 12 7 PRJNA602594 16965 310 0.974684 3.0215204 Betainfluenzavirus influenzae 2955465 Viruses Viruses 226.0 1.6099999999999998e-54 Betainfluenzavirus influenzae Non-phage NTclustered PRJNA602594_P_NODE_16965_length_310_cov_0.974684_g16667_i0   Influenza B virus (B/Iowa/17/2023) segment 3 polymerase PA (PA) gene, complete cds gi|2528458919|gb|OR202761.1| 11520 g16667 i0 79.935 47.86129032 309 60 99.0 2 2 309 1719 1412 14837 226.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae Influenza B virus (B/Lee/194 gi|2528458919|gb|OR202761.1| Viruses Viruses Viruses Viruses 226.0 191.0 1.6099999999999998e-54 1.4e-54

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;