metadata: viruses_fish_associated_curated: 4 rows where Category = "Novel", bioproject = "PRJNA599026" and clusterLCA

4 rows where Category = "Novel", bioproject = "PRJNA599026" and clusterLCA_curated = "Zebrafish gut calicivirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
9498	9498	PRJNA599026_CONTIG_15311\|Fujian_spotted_paddle-tail_newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA599026_CONTIG_15311\|Fujian_spotted_paddle-tail_newt_calicivirus	PRJNA599026_CONTIG_15311	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA599026	15311	258	1.301435	3.3577023	Fujian spotted paddle-tail newt calicivirus	2116168	Viruses	Viruses	53.5	7.22e-06	Fujian spotted paddle-tail newt calicivirus	Non-phage	NR	PRJNA599026_S_NODE_15311_length_258_cov_1.301435_g14855_i0	AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus]	AVM87224.1	2116168	g14855	i0	35.5	1.790697674	76	48	87.2	1	11	235	342	417	462	53.5	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Fujian spotted paddle-tail newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Fujian spotted paddle-tail newt calicivirus	Viruses	Viruses	53.5	7.22e-06
9513	9513	PRJNA599026_CONTIG_26953\|Newt_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA599026_CONTIG_26953\|Newt_calicivirus	PRJNA599026_CONTIG_26953	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA599026	26953	209	2.11875	4.4281875	Newt calicivirus	2961777	Viruses	Viruses	101.0	5.969999999999999e-23	Newt calicivirus	Non-phage	NR	PRJNA599026_S_NODE_26953_length_209_cov_2.118750_g26497_i0	DAZ91097.1 TPA_asm: nonstructural protein, partial [Newt calicivirus]	DAZ91097.1	2961777	g26497	i0	59.4	0.990430622	69	28	99.0	0	1	207	1796	1864	207	101.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Newt calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Newt calicivirus	Viruses	Viruses	101.0	5.969999999999999e-23
9520	9520	PRJNA599026_CONTIG_37307\|Beihai_conger_calicivirus\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA599026_CONTIG_37307\|Beihai_conger_calicivirus	PRJNA599026_CONTIG_37307	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA599026	37307	186	2.007299	3.73357614	Beihai conger calicivirus	2116161	Viruses	Viruses	92.8	3.99e-20	Beihai conger calicivirus	Non-phage	NR	PRJNA599026_S_NODE_37307_length_186_cov_2.007299_g36851_i0	AVM87195.1 polyprotein [Beihai conger calicivirus]	AVM87195.1	2116161	g36851	i0	70.7	4.758064516	58	17	93.5	0	184	11	1713	1770	885	92.8	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Beihai conger calicivirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Beihai conger calicivirus	Viruses	Viruses	92.8	3.99e-20
9524	9524	PRJNA599026_CONTIG_67814\|Zhejiang_gunthers_frog_calicivirus_1\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA599026_CONTIG_67814\|Zhejiang_gunthers_frog_calicivirus_1	PRJNA599026_CONTIG_67814	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA599026	67814	162	0.902655	1.4623011	Zhejiang gunthers frog calicivirus 1	2116158	Viruses	Viruses	56.6	1.55e-07	Zhejiang gunthers frog calicivirus 1	Non-phage	NR	PRJNA599026_S_NODE_67814_length_162_cov_0.902655_g67358_i0	AVM87226.1 polyprotein [Zhejiang gunthers frog calicivirus 1]	AVM87226.1	2116158	g67358	i0	55.1	0.907407407	49	21	90.7	1	152	6	267	314	147	56.6	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae	Zhejiang gunthers frog calicivirus 1	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus	Zhejiang gunthers frog calicivirus 1	Viruses	Viruses	56.6	1.55e-07

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;