metadata: viruses_fish_associated_curated: 3 rows where Category = "Novel", bioproject = "PRJNA293022" and clusterLCA

3 rows where Category = "Novel", bioproject = "PRJNA293022" and clusterLCA_curated = "Zebrafish rhabdo-like virus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
10216	10216	PRJNA293022_CONTIG_12374\|Salmovirus_WFRC1\|CLUSTER3_Salmovirus_WFRC1\|3\|3	Zebrafish rhabdo-like virus	Novel	PRJNA293022_CONTIG_12374\|Salmovirus_WFRC1	PRJNA293022_CONTIG_12374	Salmovirus WFRC1	37	9	6	CLUSTER3_Salmovirus_WFRC1\|3\|3	PRJNA293022_P_NODE_12374_length_406_cov_2.389356_g11637_i0\|Salmovirus_WFRC1\|NR\|2.65e-45\|NA	3	3	PRJNA293022	12374	406	2.389356	9.70078536	Salmovirus WFRC1	1981916	Viruses	Viruses	167.0	2.65e-45	Salmovirus WFRC1	Non-phage	NR	PRJNA293022_P_NODE_12374_length_406_cov_2.389356_g11637_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g11637	i0	54.9	0.982758621	133	59	98.3	1	4	402	146	277	399	167.0	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	167.0	2.65e-45
10244	10244	PRJNA293022_CONTIG_2483\|Salmovirus_WFRC1\|CLUSTER4_Salmovirus_WFRC1\|2\|2	Zebrafish rhabdo-like virus	Novel	PRJNA293022_CONTIG_2483\|Salmovirus_WFRC1	PRJNA293022_CONTIG_2483	Salmovirus WFRC1	37	9	6	CLUSTER4_Salmovirus_WFRC1\|2\|2	PRJNA293022_P_NODE_2483_length_847_cov_2.357143_g2015_i0\|Salmovirus_WFRC1\|NR\|4.69e-17\|NA	2	2	PRJNA293022	2483	847	2.357143	19.96500121	Salmovirus WFRC1	1981916	Viruses	Viruses	92.8	4.69e-17	Salmovirus WFRC1	Non-phage	NR	PRJNA293022_P_NODE_2483_length_847_cov_2.357143_g2015_i0	YP_009361866.1 polyprotein [Salmovirus WFRC1]	YP_009361866.1	1981916	g2015	i0	45.6	0.40377804	114	58	40.4	1	847	506	318	427	342	92.8	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	92.8	4.69e-17
10439	10439	PRJNA293022_CONTIG_30016\|Salmovirus_WFRC1\|CLUSTER6_Salmovirus_WFRC1\|1\|1	Zebrafish rhabdo-like virus	Novel	PRJNA293022_CONTIG_30016\|Salmovirus_WFRC1	PRJNA293022_CONTIG_30016	Salmovirus WFRC1	37	9	6	CLUSTER6_Salmovirus_WFRC1\|1\|1	PRJNA293022_P_NODE_30016_length_256_cov_2.381643_g29279_i0\|Salmovirus_WFRC1\|NR\|3.15e-05\|NA	1	1	PRJNA293022	30016	256	2.381643	6.09700608	Salmovirus WFRC1	1981916	Viruses	Viruses	51.6	3.15e-05	Salmovirus WFRC1	Non-phage	NR	PRJNA293022_P_NODE_30016_length_256_cov_2.381643_g29279_i0	YP_009361865.1 protease [Salmovirus WFRC1]	YP_009361865.1	1981916	g29279	i0	36.5	0.8671875	74	47	86.7	0	3	224	271	344	222	51.6	1.0	Viruses	Salmovirus WFRC1	Viruses;Zebrafish rhabdo-like virus	Salmovirus WFRC1	Viruses	Viruses	51.6	3.15e-05

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;