RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where Category = "Insufficient Evidence" and bioproject = "PRJNA638138"

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tax_family_NTorNR 1

bioproject 1

  • PRJNA638138 · 4 ✖

Category 1

  • Insufficient Evidence · 4 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10369 10369 PRJNA638138_CONTIG_3941|Astyanax_tetra_cavefish_adintovirus|CLUSTER5_Astyanax_tetra_cavefish_adintovirus|1|1 Astyanax tetra cavefish adintovirus Insufficient Evidence PRJNA638138_CONTIG_3941|Astyanax_tetra_cavefish_adintovirus PRJNA638138_CONTIG_3941 Astyanax tetra cavefish adintovirus 22 15 8 CLUSTER5_Astyanax_tetra_cavefish_adintovirus|1|1 PRJNA638138_P_NODE_3941_length_487_cov_1.101449_g3727_i0|Astyanax_tetra_cavefish_adintovirus|NR|2.38e-09|NA 1 1 PRJNA638138 3941 487 1.101449 5.36405663 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 66.2 2.38e-09 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA638138_P_NODE_3941_length_487_cov_1.101449_g3727_i0   DAC81252.1 TPA_asm: integrase [Astyanax tetra cavefish adintovirus] DAC81252.1 2609866 g3727 i0 50.9 1.016427105 55 27 33.9 0 321 485 1 55 495 66.6 0.993993994 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus   Astyanax tetra cavefish adintovirus     Viruses   Viruses   66.2   2.38e-09
10422 10422 PRJNA638138_CONTIG_20605|Astyanax_tetra_cavefish_adintovirus|CLUSTER6_Astyanax_tetra_cavefish_adintovirus|1|1 Astyanax tetra cavefish adintovirus Insufficient Evidence PRJNA638138_CONTIG_20605|Astyanax_tetra_cavefish_adintovirus PRJNA638138_CONTIG_20605 Astyanax tetra cavefish adintovirus 22 15 8 CLUSTER6_Astyanax_tetra_cavefish_adintovirus|1|1 PRJNA638138_P_NODE_20605_length_250_cov_0.870056_g20390_i0|Astyanax_tetra_cavefish_adintovirus|NR|0.0223|NA 1 1 PRJNA638138 20605 250 0.870056 2.17514 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 42.0 0.0223 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA638138_P_NODE_20605_length_250_cov_0.870056_g20390_i0   DAC81258.1 TPA_asm: gasderminX [Astyanax tetra cavefish adintovirus] DAC81258.1 2609866 g20390 i0 58.1 0.372 31 13 37.2 0 95 3 33 63 93 42.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus   Astyanax tetra cavefish adintovirus     Viruses   Viruses   42.0   0.0223
10431 10431 PRJNA638138_CONTIG_23567|Larimichthys_croaker_adintovirus|CLUSTER4_Larimichthys_croaker_adintovirus|1|1 Larimichthys croaker adintovirus Insufficient Evidence PRJNA638138_CONTIG_23567|Larimichthys_croaker_adintovirus PRJNA638138_CONTIG_23567 Larimichthys croaker adintovirus 19 14 10 CLUSTER4_Larimichthys_croaker_adintovirus|1|1 PRJNA638138_P_NODE_23567_length_249_cov_0.875000_g23352_i0|Larimichthys_croaker_adintovirus|NR|2.01e-09|NA 1 1 PRJNA638138 23567 249 0.875 2.17875 Larimichthys croaker adintovirus 2609857 Viruses Viruses 62.4 2.01e-09 Larimichthys croaker adintovirus Non-phage NR PRJNA638138_P_NODE_23567_length_249_cov_0.875000_g23352_i0   DAC81316.1 TPA_asm: FtsK [Larimichthys croaker adintovirus] DAC81316.1 2609857 g23352 i0 42.9 0.674698795 56 32 67.5 0 247 80 81 136 168 62.4 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Larimichthys croaker adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Larimichthys croaker adintovirus     Viruses   Viruses   62.4   2.01e-09
10432 10432 PRJNA638138_CONTIG_25250|Astyanax_tetra_cavefish_adintovirus|CLUSTER7_Astyanax_tetra_cavefish_adintovirus|1|1 Astyanax tetra cavefish adintovirus Insufficient Evidence PRJNA638138_CONTIG_25250|Astyanax_tetra_cavefish_adintovirus PRJNA638138_CONTIG_25250 Astyanax tetra cavefish adintovirus 22 15 8 CLUSTER7_Astyanax_tetra_cavefish_adintovirus|1|1 PRJNA638138_P_NODE_25250_length_247_cov_1.034483_g25035_i0|Astyanax_tetra_cavefish_adintovirus|NR|3.31e-14|NA 1 1 PRJNA638138 25250 247 1.034483 2.55517301 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 75.5 3.31e-14 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA638138_P_NODE_25250_length_247_cov_1.034483_g25035_i0   DAC81253.1 TPA_asm: penton [Astyanax tetra cavefish adintovirus] DAC81253.1 2609866 g25035 i0 66.0 0.607287449 50 17 60.7 0 151 2 1 50 150 75.5 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus   Astyanax tetra cavefish adintovirus     Viruses   Viruses   75.5   3.31e-14

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;