RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Insufficient Evidence" and bioproject = "PRJNA556992"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

  • PRJNA556992 · 3 ✖

Category 1

  • Insufficient Evidence · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10493 10493 PRJNA556992_CONTIG_425390|Larimichthys_croaker_adintovirus|CLUSTER8_Larimichthys_croaker_adintovirus|1|1 Larimichthys croaker adintovirus Insufficient Evidence PRJNA556992_CONTIG_425390|Larimichthys_croaker_adintovirus PRJNA556992_CONTIG_425390 Larimichthys croaker adintovirus 19 14 10 CLUSTER8_Larimichthys_croaker_adintovirus|1|1 PRJNA556992_P_NODE_425390_length_274_cov_1.781095_g423201_i0|Larimichthys_croaker_adintovirus|NR|5.71e-34|NA 1 1 PRJNA556992 425390 274 1.781095 4.8802003 Larimichthys croaker adintovirus 2609857 Viruses Viruses 129.0 5.7099999999999995e-34 Larimichthys croaker adintovirus Non-phage NR PRJNA556992_P_NODE_425390_length_274_cov_1.781095_g423201_i0   DAC81309.1 TPA_asm: integrase [Larimichthys croaker adintovirus] DAC81309.1 2609857 g423201 i0 69.2 2.989051095 91 28 99.6 0 273 1 66 156 819 129.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Larimichthys croaker adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Larimichthys croaker adintovirus     Viruses   Viruses   129.0   5.7099999999999995e-34
10494 10494 PRJNA556992_CONTIG_1001715|Larimichthys_croaker_adintovirus|CLUSTER9_Larimichthys_croaker_adintovirus|1|1 Larimichthys croaker adintovirus Insufficient Evidence PRJNA556992_CONTIG_1001715|Larimichthys_croaker_adintovirus PRJNA556992_CONTIG_1001715 Larimichthys croaker adintovirus 19 14 10 CLUSTER9_Larimichthys_croaker_adintovirus|1|1 PRJNA556992_P_NODE_1001715_length_230_cov_3.732484_g999525_i0|Larimichthys_croaker_adintovirus|NR|6.07e-20|NA 1 1 PRJNA556992 1001715 230 3.732484 8.5847132 Larimichthys croaker adintovirus 2609857 Viruses Viruses 88.6 6.07e-20 Larimichthys croaker adintovirus Non-phage NR PRJNA556992_P_NODE_1001715_length_230_cov_3.732484_g999525_i0   DAC81313.1 TPA_asm: adenain [Larimichthys croaker adintovirus] DAC81313.1 2609857 g999525 i0 57.1 0.913043478 70 30 91.3 0 2 211 87 156 210 88.6 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Larimichthys croaker adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Larimichthys croaker adintovirus     Viruses   Viruses   88.6   6.07e-20
10495 10495 PRJNA556992_CONTIG_1104782|Larimichthys_croaker_adintovirus|CLUSTER10_Larimichthys_croaker_adintovirus|1|1 Larimichthys croaker adintovirus Insufficient Evidence PRJNA556992_CONTIG_1104782|Larimichthys_croaker_adintovirus PRJNA556992_CONTIG_1104782 Larimichthys croaker adintovirus 19 14 10 CLUSTER10_Larimichthys_croaker_adintovirus|1|1 PRJNA556992_P_NODE_1104782_length_211_cov_8.036232_g1102591_i0|Larimichthys_croaker_adintovirus|NR|1.05e-24|NA 1 1 PRJNA556992 1104782 211 8.036232 16.95644952 Larimichthys croaker adintovirus 2609857 Viruses Viruses 104.0 1.05e-24 Larimichthys croaker adintovirus Non-phage NR PRJNA556992_P_NODE_1104782_length_211_cov_8.036232_g1102591_i0   DAC81309.1 TPA_asm: integrase [Larimichthys croaker adintovirus] DAC81309.1 2609857 g1102591 i0 69.1 4.848341232 68 21 96.7 0 6 209 30 97 1023 104.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Larimichthys croaker adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Larimichthys croaker adintovirus     Viruses   Viruses   104.0   1.05e-24

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;