RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Insufficient Evidence" and bioproject = "PRJNA1249042"

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tax_family_NTorNR 1

bioproject 1

  • PRJNA1249042 · 3 ✖

Category 1

  • Insufficient Evidence · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10107 10107 PRJNA1249042_CONTIG_6306|Adintovirus_corythoichthys13919|CLUSTER1_Larimichthys_croaker_adintovirus|8|6 Larimichthys croaker adintovirus Insufficient Evidence PRJNA1249042_CONTIG_6306|Adintovirus_corythoichthys13919 PRJNA1249042_CONTIG_6306 Larimichthys croaker adintovirus 19 14 10 CLUSTER1_Larimichthys_croaker_adintovirus|8|6 PRJNA1249042_S_NODE_6306_length_354_cov_2.350482_g6092_i0|Adintovirus_corythoichthys13919|NR|1.1e-28|NA 7 6 PRJNA1249042 6306 354 2.350482 8.32070628 Adintovirus corythoichthys13919 3115902 Viruses Viruses 117.0 1.1000000000000002e-28 Adintovirus corythoichthys13919 Non-phage NR PRJNA1249042_S_NODE_6306_length_354_cov_2.350482_g6092_i0   DBA49450.1 MAG TPA_asm: Integrase [Adintovirus corythoichthys13919] DBA49450.1 3115902 g6092 i0 57.4 3.889830508 115 43 94.9 3 6 341 184 295 1377 118.0 0.991525424 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus corythoichthys13919 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Adintovirus corythoichthys13919     Viruses   Viruses   117.0   1.1000000000000002e-28
10157 10157 PRJNA1249042_CONTIG_6702|Astyanax_tetra_cavefish_adintovirus|CLUSTER2_Astyanax_tetra_cavefish_adintovirus|6|5 Astyanax tetra cavefish adintovirus Insufficient Evidence PRJNA1249042_CONTIG_6702|Astyanax_tetra_cavefish_adintovirus PRJNA1249042_CONTIG_6702 Astyanax tetra cavefish adintovirus 22 15 8 CLUSTER2_Astyanax_tetra_cavefish_adintovirus|6|5 PRJNA1034995_S_NODE_12562_length_616_cov_22.815009_g12451_i0|Astyanax_tetra_cavefish_adintovirus|NR|1.35e-05|NA 6 5 PRJNA1249042 6702 345 3.056291 10.54420395 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 43.9 0.0199 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA1249042_S_NODE_6702_length_345_cov_3.056291_g6488_i0   DAC81251.1 TPA_asm: Bcl2 [Astyanax tetra cavefish adintovirus] DAC81251.1 2609866 g6488 i0 22.4 0.660869565 76 59 66.1 0 250 23 65 140 228 43.9 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus   Astyanax tetra cavefish adintovirus     Viruses   Viruses   43.9   0.0199
10173 10173 PRJNA1249042_CONTIG_58581|Larimichthys_croaker_adintovirus|CLUSTER2_Larimichthys_croaker_adintovirus|5|5 Larimichthys croaker adintovirus Insufficient Evidence PRJNA1249042_CONTIG_58581|Larimichthys_croaker_adintovirus PRJNA1249042_CONTIG_58581 Larimichthys croaker adintovirus 19 14 10 CLUSTER2_Larimichthys_croaker_adintovirus|5|5 PRJNA944406_P_NODE_6007_length_524_cov_1.352550_g5055_i0|Larimichthys_croaker_adintovirus|NR|4.27e-20|NA 4 4 PRJNA1249042 58581 200 1.165605 2.33121 Larimichthys croaker adintovirus 2609857 Viruses Viruses 72.0 1.11e-13 Larimichthys croaker adintovirus Non-phage NR PRJNA1249042_S_NODE_58581_length_200_cov_1.165605_g58367_i0   DAC81313.1 TPA_asm: adenain [Larimichthys croaker adintovirus] DAC81313.1 2609857 g58367 i0 52.7 1.56 55 26 82.5 0 165 1 60 114 312 72.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Larimichthys croaker adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Larimichthys croaker adintovirus     Viruses   Viruses   72.0   1.11e-13

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;