RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where Category = "Insufficient Evidence" and bioproject = "PRJEB64798"

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tax_species_NTorNR 2

tax_genus_NTorNR 2

tax_family_NTorNR 2

bioproject 1

  • PRJEB64798 · 2 ✖

Category 1

  • Insufficient Evidence · 2 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10401 10401 PRJEB64798_CONTIG_12185|Cutthroat_trout_virus|CLUSTER1_Cutthroat_trout_virus|1|1 Cutthroat trout virus Insufficient Evidence PRJEB64798_CONTIG_12185|Cutthroat_trout_virus PRJEB64798_CONTIG_12185 Cutthroat trout virus 1 1 1 CLUSTER1_Cutthroat_trout_virus|1|1 PRJEB64798_P_NODE_12185_length_573_cov_5.620229_g10587_i0|Cutthroat_trout_virus|NR|0.000991|NA 1 1 PRJEB64798 12185 573 5.620229 32.20391217 Cutthroat trout virus 1016879 Viruses Viruses 51.2 0.000991 Cutthroat trout virus Non-phage NR PRJEB64798_P_NODE_12185_length_573_cov_5.620229_g10587_i0   UCJ03458.1 polyprotein [Cutthroat trout virus] UCJ03458.1 1016879 g10587 i0 27.7 1.795811518 177 100 86.9 8 572 75 973 1132 1029 51.2 1.0 Viruses Riboviria Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Hepeviridae Piscihepevirus Piscihepevirus heenan Viruses;Riboviria;Orthornavirae;Kitrinoviricota;Alsuviricetes;Hepelivirales;Hepeviridae;Piscihepevirus;Cutthroat trout virus   Cutthroat trout virus     Viruses   Viruses   51.2   0.000991
10458 10458 PRJEB64798_CONTIG_44002|Blotched_snakehead_virus|CLUSTER1_Blotched_snakehead_virus|1|1 Blotched snakehead virus Insufficient Evidence PRJEB64798_CONTIG_44002|Blotched_snakehead_virus PRJEB64798_CONTIG_44002 Blotched snakehead virus 1 1 1 CLUSTER1_Blotched_snakehead_virus|1|1 PRJEB64798_P_NODE_44002_length_297_cov_2.685484_g42237_i0|Blotched_snakehead_virus|NR|1.15e-05|NA 1 1 PRJEB64798 44002 297 2.685484 7.97588748 Blotched snakehead virus 311176 Viruses Viruses 53.5 1.15e-05 Blotched snakehead virus Non-phage NR PRJEB64798_P_NODE_44002_length_297_cov_2.685484_g42237_i0   YP_052862.1 polyprotein [Blotched snakehead virus] YP_052862.1 311176 g42237 i0 30.2 1.949494949 96 64 97.0 2 8 295 327 419 579 53.5 1.0 Viruses Riboviria Orthornavirae       Birnaviridae Blosnavirus Blosnavirus channae Viruses;Riboviria;Orthornavirae;Birnaviridae;Blosnavirus;Blotched snakehead virus   Blotched snakehead virus     Viruses   Viruses   53.5   1.15e-05

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;