metadata: viruses_fish_associated_curated: 9 rows where Category = "Endogenous or not fish-associated" and tax_genus

9 rows where Category = "Endogenous or not fish-associated" and tax_genus_NTorNR = "Nicoomyvirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9786	9786	PRJNA309466_CONTIG_5334\|Nicoomyvirus_peneszensis\|CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA309466_CONTIG_5334\|Nicoomyvirus_peneszensis	PRJNA309466_CONTIG_5334	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence	21	14	PRJNA309466	5334	251	7.683168	19.28475168	Nicoomyvirus peneszensis	3431455	Viruses	Viruses	348.0	2.59e-91	Nicoomyvirus peneszensis	Non-phage	NTclustered	PRJNA309466_P_NODE_5334_length_251_cov_7.683168_g5277_i0	MAG: Grus japonensis parvo-like hybrid virus isolate cra70par025 genomic sequence, sequence	gi\|2028284253\|gb\|MW046451.1\|	2794511	g5277	i0	91.732	3.051792829	254	16	99.0	3	1	250	431	683	766	348.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus peneszensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus peneszensis		gi\|2028284253\|gb\|MW046451.1\|	Viruses		Viruses		348.0		2.59e-91
9787	9787	PRJNA557436_CONTIG_6343\|Nicoomyvirus_moldensis\|CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA557436_CONTIG_6343\|Nicoomyvirus_moldensis	PRJNA557436_CONTIG_6343	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence	21	14	PRJNA557436	6343	169	7.902985	13.35604465	Nicoomyvirus moldensis	3431103	Viruses	Viruses	143.0	8.139999999999999e-30	Nicoomyvirus moldensis	Non-phage	NTclustered	PRJNA557436_S_NODE_6343_length_169_cov_7.902985_g6295_i0	MAG: Parvo-like hybrid virus UC4 isolate par077par1 genomic sequence	gi\|1836405723\|gb\|MT138265.1\|	1395615	g6295	i0	88.43	1.710059172	121	11	72.0	3	24	144	120	3	289	143.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus moldensis		gi\|1836405723\|gb\|MT138265.1\|	Viruses		Viruses		143.0		8.139999999999999e-30
9792	9792	PRJNA312107_CONTIG_21068\|Nicoomyvirus\|CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA312107_CONTIG_21068\|Nicoomyvirus	PRJNA312107_CONTIG_21068	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence	21	14	PRJNA312107	21068	167	0.881356	1.47186452	Nicoomyvirus	3425078	Viruses	Viruses	309.0	7.53e-80	Nicoomyvirus	Non-phage	NTclustered	PRJNA312107_P_NODE_21068_length_167_cov_0.881356_g20902_i0	Parvovirus NIH-CQV putative 15-kDa protein, putative replication associated protein (rep), and putative capsid protein (cap) genes, complete cds	gi\|530787446\|ref\|NC_022089.1\|	1341019	g20902	i0	100.0	15.0	167	0	100.0	0	1	167	885	1051	2505	309.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus	Parvo-like hybrid virus UC9	gi\|530787446\|ref\|NC_022089.1\|	Viruses	Viruses	Viruses	Viruses	309.0	114.0	7.53e-80	1.47e-28
9793	9793	PRJNA543299_CONTIG_24205\|Nicoomyvirus\|CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA543299_CONTIG_24205\|Nicoomyvirus	PRJNA543299_CONTIG_24205	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence	21	14	PRJNA543299	24205	163	0.894737	1.45842131	Nicoomyvirus	3425078	Viruses	Viruses	257.0	2.68e-64	Nicoomyvirus	Non-phage	NTclustered	PRJNA543299_P_NODE_24205_length_163_cov_0.894737_g24048_i0	Parvovirus NIH-CQV putative 15-kDa protein, putative replication associated protein (rep), and putative capsid protein (cap) genes, complete cds	gi\|530787446\|ref\|NC_022089.1\|	1341019	g24048	i0	95.122	14.32515337	164	6	100.0	2	1	163	3180	3342	2335	257.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus	Parvo-like hybrid virus UC8	gi\|530787446\|ref\|NC_022089.1\|	Viruses	Viruses	Viruses	Viruses	257.0	97.1	2.68e-64	7.62e-22
9794	9794	PRJNA674048_CONTIG_29377\|Nicoomyvirus_moldensis\|CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA674048_CONTIG_29377\|Nicoomyvirus_moldensis	PRJNA674048_CONTIG_29377	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence	21	14	PRJNA674048	29377	166	0.888889	1.47555574	Nicoomyvirus moldensis	3431103	Viruses	Viruses	128.0	2.25e-25	Nicoomyvirus moldensis	Non-phage	NTclustered	PRJNA674048_P_NODE_29377_length_166_cov_0.888889_g29174_i0	MAG: Parvo-like hybrid virus UC4 isolate par077par1 genomic sequence	gi\|1836405723\|gb\|MT138265.1\|	1395615	g29174	i0	93.182	1.542168675	88	5	53.0	1	76	163	120	34	256	128.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus moldensis		gi\|1836405723\|gb\|MT138265.1\|	Viruses		Viruses		128.0		2.25e-25
9955	9955	PRJEB25583_CONTIG_1770\|Parvo-like_hybrid_virus_UC9\|CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJEB25583_CONTIG_1770\|Parvo-like_hybrid_virus_UC9	PRJEB25583_CONTIG_1770	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0\|Fish-associated_parvo-like_hybrid_virus\|NTclustered\|0\|NA	14	7	PRJEB25583	1770	318	7.274021	23.13138678	Parvo-like hybrid virus UC9	1395620	Viruses	Viruses	184.0	2.0599999999999998e-54	Parvo-like hybrid virus UC9	Non-phage	NR	PRJEB25583_P_NODE_1770_length_318_cov_7.274021_g1593_i0	AGV22413.1 replication protein [Parvo-like hybrid virus UC9]	AGV22413.1	1395620	g1593	i0	83.3	0.962264151	102	17	96.2	0	316	11	7	108	306	184.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus		Parvo-like hybrid virus UC9			Viruses		Viruses		184.0		2.0599999999999998e-54
9965	9965	PRJNA800053_CONTIG_12375\|Nicoomyvirus_moldensis\|CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA800053_CONTIG_12375\|Nicoomyvirus_moldensis	PRJNA800053_CONTIG_12375	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0\|Fish-associated_parvo-like_hybrid_virus\|NTclustered\|0\|NA	14	7	PRJNA800053	12375	284	1.819905	5.1685302	Nicoomyvirus moldensis	3431103	Viruses	Viruses	359.0	1.38e-94	Nicoomyvirus moldensis	Non-phage	NTclustered	PRJNA800053_P_NODE_12375_length_284_cov_1.819905_g12211_i0	MAG: Parvo-like hybrid virus UC4 isolate par077par1 genomic sequence	gi\|1836405723\|gb\|MT138265.1\|	1395615	g12211	i0	89.474	1.003521127	285	28	100.0	2	1	284	1897	1614	285	359.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus moldensis	Parvo-like hybrid virus UC4	gi\|1836405723\|gb\|MT138265.1\|	Viruses	Viruses	Viruses	Viruses	359.0	175.0	1.38e-94	2.49e-51
9967	9967	PRJNA784979_CONTIG_12709\|Grus_japonensis_parvo-like_hybrid_virus\|CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA784979_CONTIG_12709\|Grus_japonensis_parvo-like_hybrid_virus	PRJNA784979_CONTIG_12709	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0\|Fish-associated_parvo-like_hybrid_virus\|NTclustered\|0\|NA	14	7	PRJNA784979	12709	162	1.283186	2.07876132	Grus japonensis parvo-like hybrid virus	2794511	Viruses	Viruses	72.4	2.95e-13	Grus japonensis parvo-like hybrid virus	Non-phage	NR	PRJNA784979_S_NODE_12709_length_162_cov_1.283186_g12667_i0	QTZ83196.1 MAG: capsid protein [Grus japonensis parvo-like hybrid virus]	QTZ83196.1	2794511	g12667	i0	72.1	0.796296296	43	12	79.6	0	24	152	22	64	129	72.4	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus peneszensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus		Grus japonensis parvo-like hybrid virus			Viruses		Viruses		72.4		2.95e-13
9968	9968	PRJNA312107_CONTIG_18951\|Grus_japonensis_parvo-like_hybrid_virus\|CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA312107_CONTIG_18951\|Grus_japonensis_parvo-like_hybrid_virus	PRJNA312107_CONTIG_18951	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0\|Fish-associated_parvo-like_hybrid_virus\|NTclustered\|0\|NA	14	7	PRJNA312107	18951	169	0.866667	1.46466723	Grus japonensis parvo-like hybrid virus	2794511	Viruses	Viruses	45.1	0.0021	Grus japonensis parvo-like hybrid virus	Non-phage	NR	PRJNA312107_P_NODE_18951_length_169_cov_0.866667_g18785_i0	QTZ83196.1 MAG: capsid protein [Grus japonensis parvo-like hybrid virus]	QTZ83196.1	2794511	g18785	i0	64.5	0.550295858	31	11	55.0	0	1	93	299	329	93	45.1	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus peneszensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus		Grus japonensis parvo-like hybrid virus			Viruses		Viruses		45.1		0.0021

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;