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viruses_fish_associated_curated

8 rows where Category = "Endogenous or not fish-associated", tax_family_NTorNR = "Parvoviridae" and tax_species_NTorNR = "Parvoviridae sp."

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tax_species_NTorNR 1

  • Parvoviridae sp. · 8 ✖

tax_family_NTorNR 1

  • Parvoviridae · 8 ✖

Category 1

  • Endogenous or not fish-associated · 8 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10021 10021 PRJNA642647_CONTIG_1768|Aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA642647_CONTIG_1768|Aveparvovirus PRJNA642647_CONTIG_1768 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA642647 1768 261 1.303571 3.40232031 Aveparvovirus 1511864 Viruses Viruses 470.0 5.539999999999999e-128 Aveparvovirus Non-phage NTclustered PRJNA642647_P_NODE_1768_length_261_cov_1.303571_g1718_i0   Parvoviridae sp. isolate SpinColumn17, partial genome gi|2814138549|gb|PQ313132.1| 1940570 g1718 i0 99.611 1.969348659 257 1 98.0 0 2 258 160 416 514 470.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Aveparvovirus Psittaciform aveparvovirus gi|2814138549|gb|PQ313132.1| Viruses Viruses Viruses Viruses 470.0 125.0 5.539999999999999e-128 2.6300000000000004e-32
10033 10033 PRJNA846486_CONTIG_14014|Aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA846486_CONTIG_14014|Aveparvovirus PRJNA846486_CONTIG_14014 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA846486 14014 334 2.05614 6.8675076 Aveparvovirus 1511864 Viruses Viruses 612.0 1.15e-170 Aveparvovirus Non-phage NTclustered PRJNA846486_P_NODE_14014_length_334_cov_2.056140_g13918_i0   Parvoviridae sp. isolate SpinColumn17, partial genome gi|2814138549|gb|PQ313132.1| 1940570 g13918 i0 99.701 2.0 334 1 100.0 0 1 334 22 355 668 612.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Aveparvovirus Psittaciform aveparvovirus gi|2814138549|gb|PQ313132.1| Viruses Viruses Viruses Viruses 612.0 88.6 1.15e-170 5.6e-18
10049 10049 PRJNA846486_CONTIG_53214|Aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA846486_CONTIG_53214|Aveparvovirus PRJNA846486_CONTIG_53214 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA846486 53214 193 2.125 4.10125 Aveparvovirus 1511864 Viruses Viruses 342.0 8.819999999999999e-90 Aveparvovirus Non-phage NTclustered PRJNA846486_P_NODE_53214_length_193_cov_2.125000_g53118_i0   Parvoviridae sp. isolate SpinColumn17, partial genome gi|2814138549|gb|PQ313132.1| 1940570 g53118 i0 100.0 1.917098446 185 0 96.0 0 1 185 425 609 370 342.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Aveparvovirus Psittaciform aveparvovirus gi|2814138549|gb|PQ313132.1| Viruses Viruses Viruses Viruses 342.0 131.0 8.819999999999999e-90 9.42e-35
10050 10050 PRJEB64798_CONTIG_64252|Aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJEB64798_CONTIG_64252|Aveparvovirus PRJEB64798_CONTIG_64252 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJEB64798 64252 242 9.849741 23.83637322 Aveparvovirus 1511864 Viruses Viruses 283.0 7.1e-72 Aveparvovirus Non-phage NTclustered PRJEB64798_P_NODE_64252_length_242_cov_9.849741_g62487_i0   Parvoviridae sp. isolate SpinColumn17, partial genome gi|2814138549|gb|PQ313132.1| 1940570 g62487 i0 88.789 1.842975207 223 15 88.0 2 30 242 1449 1227 446 283.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Aveparvovirus Psittaciform aveparvovirus gi|2814138549|gb|PQ313132.1| Viruses Viruses Viruses Viruses 283.0 64.7 7.1e-72 6.31e-10
10064 10064 PRJEB43370_CONTIG_109|Parvoviridae_sp.|CLUSTER2_Psittaciform_aveparvovirus|11|8 Psittaciform aveparvovirus Endogenous or not fish-associated PRJEB43370_CONTIG_109|Parvoviridae_sp. PRJEB43370_CONTIG_109 Psittaciform aveparvovirus 19 12 2 CLUSTER2_Psittaciform_aveparvovirus|11|8 PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0|Psittaciform_aveparvovirus|NTclustered|0|NA 11 8 PRJEB43370 109 1201 6.372396 76.53247596 Parvoviridae sp. 1940570 Viruses Viruses 587.0 5.510000000000001e-208 Parvoviridae sp. Non-phage NR PRJEB43370_P_NODE_109_length_1201_cov_6.372396_g90_i0   XNT21000.1 MAG: replication protein [Parvoviridae sp.] XNT21000.1 1940570 g90 i0 71.9 1.925895087 384 106 95.9 1 17 1168 6 387 2313 587.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Flumine parvovirus 11 Parvoviridae sp. gi|2235497401|gb|OM953996.1| Viruses Viruses Viruses Viruses 272.0 587.0 8.64e-68 5.510000000000001e-208
10067 10067 PRJNA421571_CONTIG_6795|Parvoviridae_sp.|CLUSTER2_Psittaciform_aveparvovirus|11|8 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA421571_CONTIG_6795|Parvoviridae_sp. PRJNA421571_CONTIG_6795 Psittaciform aveparvovirus 19 12 2 CLUSTER2_Psittaciform_aveparvovirus|11|8 PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0|Psittaciform_aveparvovirus|NTclustered|0|NA 11 8 PRJNA421571 6795 1441 118.482456 1707.332191 Parvoviridae sp. 1940570 Viruses Viruses 468.0 9.5e-160 Parvoviridae sp. Non-phage NR PRJNA421571_P_NODE_6795_length_1441_cov_118.482456_g2930_i1   XNT21000.1 MAG: replication protein [Parvoviridae sp.] XNT21000.1 1940570 g2930 i1 71.0 1.290770298 310 88 64.5 1 474 1403 80 387 1860 468.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Flumine parvovirus 11 Parvoviridae sp. gi|2235497401|gb|OM953996.1| Viruses Viruses Viruses Viruses 99.0 468.0 1.87e-15 9.5e-160
10071 10071 PRJNA556992_CONTIG_33478|Parvoviridae_sp.|CLUSTER2_Psittaciform_aveparvovirus|11|8 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA556992_CONTIG_33478|Parvoviridae_sp. PRJNA556992_CONTIG_33478 Psittaciform aveparvovirus 19 12 2 CLUSTER2_Psittaciform_aveparvovirus|11|8 PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0|Psittaciform_aveparvovirus|NTclustered|0|NA 11 8 PRJNA556992 33478 601 4.880682 29.33289882 Parvoviridae sp. 1940570 Viruses Viruses 300.0 1.69e-98 Parvoviridae sp. Non-phage NR PRJNA556992_P_NODE_33478_length_601_cov_4.880682_g31362_i0   XNT21000.1 MAG: replication protein [Parvoviridae sp.] XNT21000.1 1940570 g31362 i0 70.5 1.996672213 200 57 99.8 1 2 601 52 249 1200 300.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Flumine parvovirus 11 Parvoviridae sp. gi|2235497401|gb|OM953996.1| Viruses Viruses Viruses Viruses 255.0 300.0 4.22e-63 1.69e-98
10223 10223 PRJEB10140_CONTIG_118258|Parvoviridae_sp.|CLUSTER2_Psittacidae_aveparvovirus|3|3 Psittacidae aveparvovirus Endogenous or not fish-associated PRJEB10140_CONTIG_118258|Parvoviridae_sp. PRJEB10140_CONTIG_118258 Psittacidae aveparvovirus 18 10 4 CLUSTER2_Psittacidae_aveparvovirus|3|3 PRJNA630162_P_NODE_16732_length_457_cov_2.938725_g15229_i0|Psittacidae_aveparvovirus|NR|1.21e-18|NA 3 3 PRJEB10140 118258 309 2.111538 6.52465242 Parvoviridae sp. 1940570 Viruses Viruses 64.7 1.46e-09 Parvoviridae sp. Non-phage NR PRJEB10140_P_NODE_118258_length_309_cov_2.111538_g100952_i0   QKE54887.1 MAG: replication protein [Parvoviridae sp.] QKE54887.1 1940570 g100952 i0 37.4 1.922330097 99 55 94.2 3 300 10 70 163 594 64.7 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus   Parvoviridae sp.     Viruses   Viruses   64.7   1.46e-09

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;