RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Endogenous or not fish-associated" and tax_family_NTorNR = "Marnaviridae"

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tax_species_NTorNR 1

tax_family_NTorNR 1

  • Marnaviridae · 3 ✖

clusterLCA_curated 1

bioproject 1

Category 1

  • Endogenous or not fish-associated · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10014 10014 PRJNA168635_CONTIG_868|Qianjiang_marna-like_virus_71|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_868|Qianjiang_marna-like_virus_71 PRJNA168635_CONTIG_868 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 868 816 37.794003 308.3990645 Qianjiang marna-like virus 71 3347720 Viruses Viruses 211.0 1.13e-58 Qianjiang marna-like virus 71 Non-phage NR PRJNA168635_P_NODE_868_length_816_cov_37.794003_g634_i0   XHA88176.1 MAG: putative viral coat protein [Qianjiang marna-like virus 71] XHA88176.1 3347720 g634 i0 42.9 1.011029412 275 142 97.1 5 794 3 147 417 825 211.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Qianjiang marna-like virus 71 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Qianjiang marna-like virus 71     Viruses   Viruses   211.0   1.13e-58
10026 10026 PRJNA168635_CONTIG_5432|Qianjiang_marna-like_virus_71|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_5432|Qianjiang_marna-like_virus_71 PRJNA168635_CONTIG_5432 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 5432 362 10.744409 38.89476058 Qianjiang marna-like virus 71 3347720 Viruses Viruses 83.6 7.28e-16 Qianjiang marna-like virus 71 Non-phage NR PRJNA168635_P_NODE_5432_length_362_cov_10.744409_g5027_i0   XHA88176.1 MAG: putative viral coat protein [Qianjiang marna-like virus 71] XHA88176.1 3347720 g5027 i0 43.0 0.886740331 107 60 87.8 1 334 17 188 294 321 83.6 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Qianjiang marna-like virus 71 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Qianjiang marna-like virus 71     Viruses   Viruses   83.6   7.28e-16
10041 10041 PRJNA168635_CONTIG_20215|Qianjiang_marna-like_virus_71|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_20215|Qianjiang_marna-like_virus_71 PRJNA168635_CONTIG_20215 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 20215 181 5.484848 9.92757488 Qianjiang marna-like virus 71 3347720 Viruses Viruses 69.3 6.93e-12 Qianjiang marna-like virus 71 Non-phage NR PRJNA168635_P_NODE_20215_length_181_cov_5.484848_g19799_i0   XHA88176.1 MAG: putative viral coat protein [Qianjiang marna-like virus 71] XHA88176.1 3347720 g19799 i0 56.9 0.961325967 58 25 96.1 0 180 7 278 335 174 69.3 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Qianjiang marna-like virus 71 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Qianjiang marna-like virus 71     Viruses   Viruses   69.3   6.93e-12

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;