RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Endogenous or not fish-associated", clusterLCA_curated = "Pimephales minnow adintovirus" and tax_species_NTorNR = "Adintovirus pavo15764"

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tax_species_NTorNR 1

  • Adintovirus pavo15764 · 3 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

  • Pimephales minnow adintovirus · 3 ✖

Category 1

  • Endogenous or not fish-associated · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9845 9845 PRJNA376117_CONTIG_43321|Adintovirus_pavo15764|CLUSTER3_Pimephales_minnow_adintovirus|19|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA376117_CONTIG_43321|Adintovirus_pavo15764 PRJNA376117_CONTIG_43321 Pimephales minnow adintovirus 168 104 20 CLUSTER3_Pimephales_minnow_adintovirus|19|15 PRJEB66218_P_NODE_46828_length_500_cov_1.141230_g44412_i0|Pimephales_minnow_adintovirus|NR|1e-20|NA 19 15 PRJNA376117 43321 242 0.911243 2.20520806 Adintovirus pavo15764 3115938 Viruses Viruses 85.1 3.91e-18 Adintovirus pavo15764 Non-phage NR PRJNA376117_P_NODE_43321_length_242_cov_0.911243_g43019_i0   DBA50340.1 MAG TPA_asm: PacK [Adintovirus pavo15764] DBA50340.1 3115938 g43019 i0 50.0 2.975206612 80 40 99.2 0 1 240 74 153 720 85.1 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus pavo15764 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Adintovirus pavo15764     Viruses   Viruses   85.1   3.91e-18
9854 9854 PRJNA1237347_CONTIG_562468|Adintovirus_pavo15764|CLUSTER3_Pimephales_minnow_adintovirus|19|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_562468|Adintovirus_pavo15764 PRJNA1237347_CONTIG_562468 Pimephales minnow adintovirus 168 104 20 CLUSTER3_Pimephales_minnow_adintovirus|19|15 PRJEB66218_P_NODE_46828_length_500_cov_1.141230_g44412_i0|Pimephales_minnow_adintovirus|NR|1e-20|NA 19 15 PRJNA1237347 562468 233 2.6625 6.203625 Adintovirus pavo15764 3115938 Viruses Viruses 72.8 1.84e-13 Adintovirus pavo15764 Non-phage NR PRJNA1237347_P_NODE_562468_length_233_cov_2.662500_g555894_i0   DBA50340.1 MAG TPA_asm: PacK [Adintovirus pavo15764] DBA50340.1 3115938 g555894 i0 47.3 1.944206009 74 39 95.3 0 10 231 82 155 453 72.8 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus pavo15764 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Adintovirus pavo15764     Viruses   Viruses   72.8   1.84e-13
9882 9882 PRJNA1112809_CONTIG_192420|Adintovirus_pavo15764|CLUSTER4_Pimephales_minnow_adintovirus|18|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1112809_CONTIG_192420|Adintovirus_pavo15764 PRJNA1112809_CONTIG_192420 Pimephales minnow adintovirus 168 104 20 CLUSTER4_Pimephales_minnow_adintovirus|18|15 PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0|Pimephales_minnow_adintovirus|NR|7.76e-34|NA 18 15 PRJNA1112809 192420 241 1.22619 2.9551179 Adintovirus pavo15764 3115938 Viruses Viruses 93.6 2.0900000000000002e-21 Adintovirus pavo15764 Non-phage NR PRJNA1112809_P_NODE_192420_length_241_cov_1.226190_g189145_i0   DBA50340.1 MAG TPA_asm: PacK [Adintovirus pavo15764] DBA50340.1 3115938 g189145 i0 52.5 2.987551867 80 38 99.6 0 241 2 72 151 720 93.6 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus pavo15764 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Adintovirus pavo15764     Viruses   Viruses   93.6   2.0900000000000002e-21

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;