RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA846486" and clusterLCA_curated = "Psittaciform aveparvovirus"

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tax_species_NTorNR 2

tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Psittaciform aveparvovirus · 3 ✖

bioproject 1

  • PRJNA846486 · 3 ✖

Category 1

  • Endogenous or not fish-associated · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10033 10033 PRJNA846486_CONTIG_14014|Aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA846486_CONTIG_14014|Aveparvovirus PRJNA846486_CONTIG_14014 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA846486 14014 334 2.05614 6.8675076 Aveparvovirus 1511864 Viruses Viruses 612.0 1.15e-170 Aveparvovirus Non-phage NTclustered PRJNA846486_P_NODE_14014_length_334_cov_2.056140_g13918_i0   Parvoviridae sp. isolate SpinColumn17, partial genome gi|2814138549|gb|PQ313132.1| 1940570 g13918 i0 99.701 2.0 334 1 100.0 0 1 334 22 355 668 612.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Aveparvovirus Psittaciform aveparvovirus gi|2814138549|gb|PQ313132.1| Viruses Viruses Viruses Viruses 612.0 88.6 1.15e-170 5.6e-18
10049 10049 PRJNA846486_CONTIG_53214|Aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA846486_CONTIG_53214|Aveparvovirus PRJNA846486_CONTIG_53214 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA846486 53214 193 2.125 4.10125 Aveparvovirus 1511864 Viruses Viruses 342.0 8.819999999999999e-90 Aveparvovirus Non-phage NTclustered PRJNA846486_P_NODE_53214_length_193_cov_2.125000_g53118_i0   Parvoviridae sp. isolate SpinColumn17, partial genome gi|2814138549|gb|PQ313132.1| 1940570 g53118 i0 100.0 1.917098446 185 0 96.0 0 1 185 425 609 370 342.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Aveparvovirus Psittaciform aveparvovirus gi|2814138549|gb|PQ313132.1| Viruses Viruses Viruses Viruses 342.0 131.0 8.819999999999999e-90 9.42e-35
10070 10070 PRJNA846486_CONTIG_20666|Psittaciform_aveparvovirus|CLUSTER2_Psittaciform_aveparvovirus|11|8 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA846486_CONTIG_20666|Psittaciform_aveparvovirus PRJNA846486_CONTIG_20666 Psittaciform aveparvovirus 19 12 2 CLUSTER2_Psittaciform_aveparvovirus|11|8 PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0|Psittaciform_aveparvovirus|NTclustered|0|NA 11 8 PRJNA846486 20666 282 1.472103 4.15133046 Psittaciform aveparvovirus 3042447 Viruses Viruses 483.0 7.780000000000001e-132 Psittaciform aveparvovirus Non-phage NTclustered PRJNA846486_P_NODE_20666_length_282_cov_1.472103_g20570_i0   Psittaciform aveparvovirus strain OBP1/FE1/29/2021, partial genome gi|2496529059|gb|OP577479.1| 3042447 g20570 i0 99.621 1.872340426 264 1 94.0 0 19 282 333 70 528 483.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittaciform aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Psittaciform aveparvovirus   gi|2496529059|gb|OP577479.1| Viruses   Viruses   483.0   7.780000000000001e-132  

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;