metadata: viruses_fish_associated_curated: 2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA807347" and clusterLCA

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA807347" and clusterLCA_curated = "Chuvivirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
8997	8997	PRJNA807347_CONTIG_5945\|Salarius_guttatus_piscichuvirus\|CLUSTER1_Chuvivirus\|75\|72	Chuvivirus	Endogenous or not fish-associated	PRJNA807347_CONTIG_5945\|Salarius_guttatus_piscichuvirus	PRJNA807347_CONTIG_5945	Chuvivirus	116	110	4	CLUSTER1_Chuvivirus\|75\|72	PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0\|Chuvivirus\|NR\|1.57e-31\|NA	75	72	PRJNA807347	5945	337	1.125	3.79125	Salarius guttatus piscichuvirus	2951531	Viruses	Viruses	124.0	1.8e-30	Salarius guttatus piscichuvirus	Non-phage	NR	PRJNA807347_P_NODE_5945_length_337_cov_1.125000_g5842_i0		UVF58769.1 MAG: S protein [Salarius guttatus piscichuvirus]	UVF58769.1	2951531	g5842	i0	64.0	1.522255193	86	31	76.6	0	78	335	338	423	513	124.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Salarius guttatus piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus		Salarius guttatus piscichuvirus			Viruses		Viruses		124.0		1.8e-30
9664	9664	PRJNA807347_CONTIG_8679\|Chuvivirus\|CLUSTER2_Chuvivirus\|39\|39	Chuvivirus	Endogenous or not fish-associated	PRJNA807347_CONTIG_8679\|Chuvivirus	PRJNA807347_CONTIG_8679	Chuvivirus	116	110	4	CLUSTER2_Chuvivirus\|39\|39	PRJNA896643_S_NODE_1019_length_399_cov_2.776243_g949_i0\|Chuvivirus\|NR\|3.94e-45\|NA	39	39	PRJNA807347	8679	282	1.37799	3.8859318	Chuvivirus	2842604	Viruses	Viruses	136.0	9.65e-36	Chuvivirus	Non-phage	NR	PRJNA807347_P_NODE_8679_length_282_cov_1.377990_g8576_i0		WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1]	WET19887.1	3032433	g8576	i0	67.0	2.914893617	91	30	96.8	0	4	276	290	380	822	136.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Chuvivirus	Freshwater turtle neural virus 1	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus		Chuvivirus			Viruses		Viruses		136.0		9.65e-36

Advanced export

JSON shape: default, array, newline-delimited

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;