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viruses_fish_associated_curated

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA761449" and clusterLCA_curated = "Chuvivirus"

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tax_species_NTorNR 1

tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Chuvivirus · 2 ✖

bioproject 1

  • PRJNA761449 · 2 ✖

Category 1

  • Endogenous or not fish-associated · 2 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9009 9009 PRJNA761449_CONTIG_7233|Chuvivirus|CLUSTER1_Chuvivirus|75|72 Chuvivirus Endogenous or not fish-associated PRJNA761449_CONTIG_7233|Chuvivirus PRJNA761449_CONTIG_7233 Chuvivirus 116 110 4 CLUSTER1_Chuvivirus|75|72 PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0|Chuvivirus|NR|1.57e-31|NA 75 72 PRJNA761449 7233 272 1.60804 4.3738688 Chuvivirus 2842604 Viruses Viruses 103.0 1.4000000000000002e-23 Chuvivirus Non-phage NR PRJNA761449_P_NODE_7233_length_272_cov_1.608040_g7197_i0   WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1] WET19887.1 3032433 g7197 i0 60.7 1.963235294 89 35 98.2 0 268 2 245 333 534 103.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Freshwater turtle neural virus 1 Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Chuvivirus     Viruses   Viruses   103.0   1.4000000000000002e-23
9663 9663 PRJNA761449_CONTIG_7474|Chuvivirus|CLUSTER2_Chuvivirus|39|39 Chuvivirus Endogenous or not fish-associated PRJNA761449_CONTIG_7474|Chuvivirus PRJNA761449_CONTIG_7474 Chuvivirus 116 110 4 CLUSTER2_Chuvivirus|39|39 PRJNA896643_S_NODE_1019_length_399_cov_2.776243_g949_i0|Chuvivirus|NR|3.94e-45|NA 39 39 PRJNA761449 7474 268 1.384615 3.7107682 Chuvivirus 2842604 Viruses Viruses 111.0 2.1e-26 Chuvivirus Non-phage NR PRJNA761449_P_NODE_7474_length_268_cov_1.384615_g7438_i0   WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1] WET19887.1 3032433 g7438 i0 62.4 2.865671642 85 32 95.1 0 13 267 269 353 768 111.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Freshwater turtle neural virus 1 Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Chuvivirus     Viruses   Viruses   111.0   2.1e-26

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;