metadata: viruses_fish_associated_curated: 2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA704066" and tax_species_NTorNR = "Salarius guttatus piscichuvirus"

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA704066" and tax_species_NTorNR = "Salarius guttatus piscichuvirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9216	9216	PRJNA704066_CONTIG_24827\|Salarius_guttatus_piscichuvirus\|CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	Salarius guttatus piscichuvirus	Endogenous or not fish-associated	PRJNA704066_CONTIG_24827\|Salarius_guttatus_piscichuvirus	PRJNA704066_CONTIG_24827	Salarius guttatus piscichuvirus	67	58	5	CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0\|Salarius_guttatus_piscichuvirus\|NR\|7.17e-28\|NA	63	56	PRJNA704066	24827	268	1.435897	3.84820396	Salarius guttatus piscichuvirus	2951531	Viruses	Viruses	71.6	3.59e-12	Salarius guttatus piscichuvirus	Non-phage	NR	PRJNA704066_P_NODE_24827_length_268_cov_1.435897_g24700_i0		UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus]	UVF58767.1	2951531	g24700	i0	43.5	0.951492537	85	48	95.1	0	1	255	102	186	255	71.6	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Salarius guttatus piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus		Salarius guttatus piscichuvirus			Viruses		Viruses		71.6		3.59e-12
9672	9672	PRJNA704066_CONTIG_16209\|Salarius_guttatus_piscichuvirus\|CLUSTER2_Chuvivirus\|39\|39	Chuvivirus	Endogenous or not fish-associated	PRJNA704066_CONTIG_16209\|Salarius_guttatus_piscichuvirus	PRJNA704066_CONTIG_16209	Chuvivirus	116	110	4	CLUSTER2_Chuvivirus\|39\|39	PRJNA896643_S_NODE_1019_length_399_cov_2.776243_g949_i0\|Chuvivirus\|NR\|3.94e-45\|NA	39	39	PRJNA704066	16209	323	1.076	3.47548	Salarius guttatus piscichuvirus	2951531	Viruses	Viruses	142.0	2.43e-37	Salarius guttatus piscichuvirus	Non-phage	NR	PRJNA704066_P_NODE_16209_length_323_cov_1.076000_g16082_i0		UVF58769.1 MAG: S protein [Salarius guttatus piscichuvirus]	UVF58769.1	2951531	g16082	i0	60.4	2.953560372	106	42	98.5	0	319	2	324	429	954	142.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Salarius guttatus piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus		Salarius guttatus piscichuvirus			Viruses		Viruses		142.0		2.43e-37

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;