RNAquarium Metadata Server
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viruses_fish_associated_curated

5 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA638138" and clusterLCA_curated = "Adintovirus anguilla10665"

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tax_family_NTorNR 1

clusterLCA_curated 1

  • Adintovirus anguilla10665 · 5 ✖

bioproject 1

  • PRJNA638138 · 5 ✖

Category 1

  • Endogenous or not fish-associated · 5 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10245 10245 PRJNA638138_CONTIG_2716|Astyanax_tetra_cavefish_adintovirus|CLUSTER3_Adintovirus_anguilla1|2|1 Adintovirus anguilla10665 Endogenous or not fish-associated PRJNA638138_CONTIG_2716|Astyanax_tetra_cavefish_adintovirus PRJNA638138_CONTIG_2716 Adintovirus anguilla1 34 19 10 CLUSTER3_Adintovirus_anguilla1|2|1 PRJNA638138_P_NODE_2716_length_580_cov_0.962525_g2504_i0|Astyanax_tetra_cavefish_adintovirus|NR|5.26e-35|NA 2 1 PRJNA638138 2716 580 0.962525 5.582645 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 134.0 5.26e-35 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA638138_P_NODE_2716_length_580_cov_0.962525_g2504_i0   DAC81257.1 TPA_asm: acintoc2 [Astyanax tetra cavefish adintovirus] DAC81257.1 2609866 g2504 i0 45.9 0.765517241 148 73 72.9 1 579 157 106 253 444 134.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665   Astyanax tetra cavefish adintovirus     Viruses   Viruses   134.0   5.26e-35
10253 10253 PRJNA638138_CONTIG_8911|Adintovirus_anguilla1|CLUSTER3_Adintovirus_anguilla1|2|1 Adintovirus anguilla10665 Endogenous or not fish-associated PRJNA638138_CONTIG_8911|Adintovirus_anguilla1 PRJNA638138_CONTIG_8911 Adintovirus anguilla1 34 19 10 CLUSTER3_Adintovirus_anguilla1|2|1 PRJNA638138_P_NODE_2716_length_580_cov_0.962525_g2504_i0|Astyanax_tetra_cavefish_adintovirus|NR|5.26e-35|NA 2 1 PRJNA638138 8911 345 1.466912 5.0608464 Adintovirus anguilla1 3115889 Viruses Viruses 82.8 4.89e-17 Adintovirus anguilla1 Non-phage NR PRJNA638138_P_NODE_8911_length_345_cov_1.466912_g8696_i0   DBA49783.1 MAG TPA_asm: Adenain [Adintovirus anguilla10665] DBA49783.1 3115889 g8696 i0 50.0 0.67826087 78 39 67.8 0 1 234 104 181 234 82.8 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus anguilla10665 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665   Adintovirus anguilla1     Viruses   Viruses   82.8   4.89e-17
10356 10356 PRJNA638138_CONTIG_2523|Adintovirus_anguilla1|CLUSTER4_Adintovirus_anguilla1|1|1 Adintovirus anguilla10665 Endogenous or not fish-associated PRJNA638138_CONTIG_2523|Adintovirus_anguilla1 PRJNA638138_CONTIG_2523 Adintovirus anguilla1 34 19 10 CLUSTER4_Adintovirus_anguilla1|1|1 PRJNA638138_P_NODE_2523_length_599_cov_0.931559_g2311_i0|Adintovirus_anguilla1|NR|4.76e-76|NA 1 1 PRJNA638138 2523 599 0.931559 5.58003841 Adintovirus anguilla1 3115889 Viruses Viruses 242.0 4.76e-76 Adintovirus anguilla1 Non-phage NR PRJNA638138_P_NODE_2523_length_599_cov_0.931559_g2311_i0   DBA49779.1 MAG TPA_asm: Integrase [Adintovirus anguilla10665] DBA49779.1 3115889 g2311 i0 60.5 2.85475793 190 75 95.2 0 570 1 159 348 1710 242.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus anguilla10665 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665   Adintovirus anguilla1     Viruses   Viruses   242.0   4.76e-76
10377 10377 PRJNA638138_CONTIG_4878|Adintovirus_anguilla1|CLUSTER6_Adintovirus_anguilla1|1|1 Adintovirus anguilla10665 Endogenous or not fish-associated PRJNA638138_CONTIG_4878|Adintovirus_anguilla1 PRJNA638138_CONTIG_4878 Adintovirus anguilla1 34 19 10 CLUSTER6_Adintovirus_anguilla1|1|1 PRJNA638138_P_NODE_4878_length_443_cov_0.897297_g4664_i0|Adintovirus_anguilla1|NR|5.62e-34|NA 1 1 PRJNA638138 4878 443 0.897297 3.97502571 Adintovirus anguilla1 3115889 Viruses Viruses 136.0 5.6199999999999996e-34 Adintovirus anguilla1 Non-phage NR PRJNA638138_P_NODE_4878_length_443_cov_0.897297_g4664_i0   DBA49787.1 MAG TPA_asm: PolBb [Adintovirus anguilla10665] DBA49787.1 3115889 g4664 i0 58.3 2.09255079 103 43 69.8 0 3 311 51 153 927 136.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus anguilla10665 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665   Adintovirus anguilla1     Viruses   Viruses   136.0   5.6199999999999996e-34
10378 10378 PRJNA638138_CONTIG_4954|Adintovirus_anguilla1|CLUSTER7_Adintovirus_anguilla1|1|1 Adintovirus anguilla10665 Endogenous or not fish-associated PRJNA638138_CONTIG_4954|Adintovirus_anguilla1 PRJNA638138_CONTIG_4954 Adintovirus anguilla1 34 19 10 CLUSTER7_Adintovirus_anguilla1|1|1 PRJNA638138_P_NODE_4954_length_439_cov_2.040984_g4740_i0|Adintovirus_anguilla1|NR|6.34e-23|NA 1 1 PRJNA638138 4954 439 2.040984 8.95991976 Adintovirus anguilla1 3115889 Viruses Viruses 97.1 6.339999999999999e-23 Adintovirus anguilla1 Non-phage NR PRJNA638138_P_NODE_4954_length_439_cov_2.040984_g4740_i0   DBA49785.1 MAG TPA_asm: GasderminX [Adintovirus anguilla10665] DBA49785.1 3115889 g4740 i0 61.3 0.512528474 75 29 51.3 0 1 225 37 111 225 97.1 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus anguilla10665 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665   Adintovirus anguilla1     Viruses   Viruses   97.1   6.339999999999999e-23

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;