RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA630162" and tax_family_NTorNR = "Astroviridae"

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tax_species_NTorNR 1

tax_family_NTorNR 1

  • Astroviridae · 2 ✖

clusterLCA_curated 1

bioproject 1

  • PRJNA630162 · 2 ✖

Category 1

  • Endogenous or not fish-associated · 2 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10421 10421 PRJNA630162_CONTIG_20357|Flumine_Astrovirus_3|CLUSTER3_Flumine_Astrovirus_3|1|1 Flumine Astrovirus 3 Endogenous or not fish-associated PRJNA630162_CONTIG_20357|Flumine_Astrovirus_3 PRJNA630162_CONTIG_20357 Flumine Astrovirus 3 6 2 5 CLUSTER3_Flumine_Astrovirus_3|1|1 PRJNA630162_P_NODE_20357_length_410_cov_2.520776_g18842_i0|Flumine_Astrovirus_3|NR|3.47e-09|NA 1 1 PRJNA630162 20357 410 2.520776 10.3351816 Flumine Astrovirus 3 2940955 Viruses Viruses 65.1 3.47e-09 Flumine Astrovirus 3 Non-phage NR PRJNA630162_P_NODE_20357_length_410_cov_2.520776_g18842_i0   UQB76172.1 RNA-dependent RNA polymerase, partial [Flumine Astrovirus 3] UQB76172.1 2940955 g18842 i0 34.1 1.324390244 91 60 66.6 0 278 6 60 150 543 65.1 1.0 Viruses Riboviria Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Flumine Astrovirus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Stelpaviricetes;Stellavirales;Astroviridae;Flumine Astrovirus 3   Flumine Astrovirus 3     Viruses   Viruses   65.1   3.47e-09
10460 10460 PRJNA630162_CONTIG_44607|Flumine_Astrovirus_3|CLUSTER4_Flumine_Astrovirus_3|1|1 Flumine Astrovirus 3 Endogenous or not fish-associated PRJNA630162_CONTIG_44607|Flumine_Astrovirus_3 PRJNA630162_CONTIG_44607 Flumine Astrovirus 3 6 2 5 CLUSTER4_Flumine_Astrovirus_3|1|1 PRJNA630162_P_NODE_44607_length_265_cov_2.009259_g43084_i0|Flumine_Astrovirus_3|NR|1.85e-15|NA 1 1 PRJNA630162 44607 265 2.009259 5.32453635 Flumine Astrovirus 3 2940955 Viruses Viruses 80.9 1.85e-15 Flumine Astrovirus 3 Non-phage NR PRJNA630162_P_NODE_44607_length_265_cov_2.009259_g43084_i0   UQB76172.1 RNA-dependent RNA polymerase, partial [Flumine Astrovirus 3] UQB76172.1 2940955 g43084 i0 44.2 1.743396226 77 43 87.2 0 252 22 231 307 462 80.9 1.0 Viruses Riboviria Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Flumine Astrovirus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Stelpaviricetes;Stellavirales;Astroviridae;Flumine Astrovirus 3   Flumine Astrovirus 3     Viruses   Viruses   80.9   1.85e-15

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;