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viruses_fish_associated_curated

6 rows where Category = "Endogenous or not fish-associated" and bioproject = "PRJNA630162"

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tax_family_NTorNR 2

tax_genus_NTorNR 1

bioproject 1

  • PRJNA630162 · 6 ✖

Category 1

  • Endogenous or not fish-associated · 6 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9795 9795 PRJNA630162_CONTIG_172398|Fish-associated_parvo-like_hybrid_virus|CLUSTER1_Fish-associated_parvo-like_hybrid_virus|21|14 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA630162_CONTIG_172398|Fish-associated_parvo-like_hybrid_virus PRJNA630162_CONTIG_172398 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER1_Fish-associated_parvo-like_hybrid_virus|21|14 MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence 21 14 PRJNA630162 172398 152 2.446602 3.71883504 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 156.0 9.21e-34 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA630162_P_NODE_172398_length_152_cov_2.446602_g170875_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g170875 i0 100.0 0.980263158 84 0 97.0 0 6 89 666 583 149 156.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus   gi|2413975758|gb|OP933682.1| Viruses   Viruses   156.0   9.21e-34  
10057 10057 PRJNA630162_CONTIG_117271|Psittaciform_aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA630162_CONTIG_117271|Psittaciform_aveparvovirus PRJNA630162_CONTIG_117271 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA630162 117271 176 1.291339 2.27275664 Psittaciform aveparvovirus 3042447 Viruses Viruses 315.0 1.7199999999999998e-81 Psittaciform aveparvovirus Non-phage NTclustered PRJNA630162_P_NODE_117271_length_176_cov_1.291339_g115748_i0   Psittaciform aveparvovirus strain OBP1/FE1/49/2021, partial genome gi|2496529060|gb|OP577480.1| 3042447 g115748 i0 99.422 0.982954545 173 1 98.0 0 4 176 2044 1872 173 315.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittaciform aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Psittaciform aveparvovirus Psittaciform aveparvovirus gi|2496529060|gb|OP577480.1| Viruses Viruses Viruses Viruses 315.0 122.0 1.7199999999999998e-81 1.1100000000000001e-31
10206 10206 PRJNA630162_CONTIG_80112|Fish-associated_parvo-like_hybrid_virus|CLUSTER3_Fish-associated_parvo-like_hybrid_virus|4|4 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA630162_CONTIG_80112|Fish-associated_parvo-like_hybrid_virus PRJNA630162_CONTIG_80112 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER3_Fish-associated_parvo-like_hybrid_virus|4|4 PRJNA784979_S_NODE_744_length_713_cov_4.688253_g709_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 4 4 PRJNA630162 80112 201 1.809211 3.63651411 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 363.0 7.11e-96 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA630162_P_NODE_80112_length_201_cov_1.809211_g78589_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g78589 i0 100.0 0.975124378 196 0 98.0 0 6 201 319 124 196 363.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus   gi|2413975758|gb|OP933682.1| Viruses   Viruses   363.0   7.11e-96  
10217 10217 PRJNA630162_CONTIG_16732|Psittacidae_aveparvovirus|CLUSTER2_Psittacidae_aveparvovirus|3|3 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA630162_CONTIG_16732|Psittacidae_aveparvovirus PRJNA630162_CONTIG_16732 Psittacidae aveparvovirus 18 10 4 CLUSTER2_Psittacidae_aveparvovirus|3|3 PRJNA630162_P_NODE_16732_length_457_cov_2.938725_g15229_i0|Psittacidae_aveparvovirus|NR|1.21e-18|NA 3 3 PRJNA630162 16732 457 2.938725 13.42997325 Psittacidae aveparvovirus 2794556 Viruses Viruses 92.0 1.21e-18 Psittacidae aveparvovirus Non-phage NR PRJNA630162_P_NODE_16732_length_457_cov_2.938725_g15229_i0   QTE03751.1 MAG: replication protein [Psittacidae aveparvovirus] QTE03751.1 2794556 g15229 i0 39.3 0.800875274 122 58 78.1 3 97 453 16 124 366 92.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus   Psittacidae aveparvovirus     Viruses   Viruses   92.0   1.21e-18
10421 10421 PRJNA630162_CONTIG_20357|Flumine_Astrovirus_3|CLUSTER3_Flumine_Astrovirus_3|1|1 Flumine Astrovirus 3 Endogenous or not fish-associated PRJNA630162_CONTIG_20357|Flumine_Astrovirus_3 PRJNA630162_CONTIG_20357 Flumine Astrovirus 3 6 2 5 CLUSTER3_Flumine_Astrovirus_3|1|1 PRJNA630162_P_NODE_20357_length_410_cov_2.520776_g18842_i0|Flumine_Astrovirus_3|NR|3.47e-09|NA 1 1 PRJNA630162 20357 410 2.520776 10.3351816 Flumine Astrovirus 3 2940955 Viruses Viruses 65.1 3.47e-09 Flumine Astrovirus 3 Non-phage NR PRJNA630162_P_NODE_20357_length_410_cov_2.520776_g18842_i0   UQB76172.1 RNA-dependent RNA polymerase, partial [Flumine Astrovirus 3] UQB76172.1 2940955 g18842 i0 34.1 1.324390244 91 60 66.6 0 278 6 60 150 543 65.1 1.0 Viruses Riboviria Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Flumine Astrovirus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Stelpaviricetes;Stellavirales;Astroviridae;Flumine Astrovirus 3   Flumine Astrovirus 3     Viruses   Viruses   65.1   3.47e-09
10460 10460 PRJNA630162_CONTIG_44607|Flumine_Astrovirus_3|CLUSTER4_Flumine_Astrovirus_3|1|1 Flumine Astrovirus 3 Endogenous or not fish-associated PRJNA630162_CONTIG_44607|Flumine_Astrovirus_3 PRJNA630162_CONTIG_44607 Flumine Astrovirus 3 6 2 5 CLUSTER4_Flumine_Astrovirus_3|1|1 PRJNA630162_P_NODE_44607_length_265_cov_2.009259_g43084_i0|Flumine_Astrovirus_3|NR|1.85e-15|NA 1 1 PRJNA630162 44607 265 2.009259 5.32453635 Flumine Astrovirus 3 2940955 Viruses Viruses 80.9 1.85e-15 Flumine Astrovirus 3 Non-phage NR PRJNA630162_P_NODE_44607_length_265_cov_2.009259_g43084_i0   UQB76172.1 RNA-dependent RNA polymerase, partial [Flumine Astrovirus 3] UQB76172.1 2940955 g43084 i0 44.2 1.743396226 77 43 87.2 0 252 22 231 307 462 80.9 1.0 Viruses Riboviria Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Flumine Astrovirus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Stelpaviricetes;Stellavirales;Astroviridae;Flumine Astrovirus 3   Flumine Astrovirus 3     Viruses   Viruses   80.9   1.85e-15

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;