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viruses_fish_associated_curated

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA600413" and clusterLCA_curated = "Chuvivirus"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Chuvivirus · 2 ✖

bioproject 1

  • PRJNA600413 · 2 ✖

Category 1

  • Endogenous or not fish-associated · 2 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9061 9061 PRJNA600413_CONTIG_54673|Sea_turtle_neural_virus_1|CLUSTER1_Chuvivirus|75|72 Chuvivirus Endogenous or not fish-associated PRJNA600413_CONTIG_54673|Sea_turtle_neural_virus_1 PRJNA600413_CONTIG_54673 Chuvivirus 116 110 4 CLUSTER1_Chuvivirus|75|72 PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0|Chuvivirus|NR|1.57e-31|NA 75 72 PRJNA600413 54673 202 1.0 2.02 Sea turtle neural virus 1 3112944 Viruses Viruses 50.4 3.98e-05 Sea turtle neural virus 1 Non-phage NR PRJNA600413_P_NODE_54673_length_202_cov_1.000000_g53972_i0   WET19891.1 MAG: nucleoprotein [Sea turtle neural virus 1] WET19891.1 3112944 g53972 i0 52.5 0.594059406 40 19 59.4 0 200 81 458 497 120 50.4 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Sea turtle neural virus 1 Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Sea turtle neural virus 1     Viruses   Viruses   50.4   3.98e-05
9062 9062 PRJNA600413_CONTIG_58808|Chuviridae|CLUSTER1_Chuvivirus|75|72 Chuvivirus Endogenous or not fish-associated PRJNA600413_CONTIG_58808|Chuviridae PRJNA600413_CONTIG_58808 Chuvivirus 116 110 4 CLUSTER1_Chuvivirus|75|72 PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0|Chuvivirus|NR|1.57e-31|NA 75 72 PRJNA600413 58808 196 1.387755 2.7199998 Chuviridae 2501952 Viruses Viruses 83.2 1.07e-16 Chuviridae Non-phage NR PRJNA600413_P_NODE_58808_length_196_cov_1.387755_g58107_i0   UVF58769.1 MAG: S protein [Salarius guttatus piscichuvirus] UVF58769.1 2951531 g58107 i0 60.9 2.93877551 64 25 98.0 0 194 3 288 351 576 83.6 0.995215311 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae   Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Chuviridae     Viruses   Viruses   83.2   1.07e-16

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;