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viruses_fish_associated_curated

7 rows where Category = "Endogenous or not fish-associated" and bioproject = "PRJNA558770"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

bioproject 1

  • PRJNA558770 · 7 ✖

Category 1

  • Endogenous or not fish-associated · 7 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9937 9937 PRJNA558770_CONTIG_41702|Psittacidae_aveparvovirus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA558770_CONTIG_41702|Psittacidae_aveparvovirus PRJNA558770_CONTIG_41702 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA558770 41702 329 8.064626 26.53261954 Psittacidae aveparvovirus 2794556 Viruses Viruses 440.0 5.66e-119 Psittacidae aveparvovirus Non-phage NTclustered PRJNA558770_P_NODE_41702_length_329_cov_8.064626_g39704_i0   MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence gi|2015372674|gb|MW046380.1| 2794556 g39704 i0 91.562 0.972644377 320 25 97.0 2 1 319 347 29 320 440.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus Psittacidae aveparvovirus   gi|2015372674|gb|MW046380.1| Viruses   Viruses   440.0   5.66e-119  
9943 9943 PRJNA558770_CONTIG_192780|parvo-like_hybrid_virus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA558770_CONTIG_192780|parvo-like_hybrid_virus PRJNA558770_CONTIG_192780 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA558770 192780 234 4.070352 9.52462368 parvo-like hybrid virus 3367306 Viruses Viruses 134.0 7.28e-27 parvo-like hybrid virus Non-phage NTclustered PRJNA558770_P_NODE_192780_length_234_cov_4.070352_g190775_i0   Parvo-like hybrid virus isolate SpinColumn12, partial genome gi|2814138529|gb|PQ313127.1| 3367306 g190775 i0 98.649 0.786324786 74 1 64.0 0 1 74 443 370 184 134.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus parvo-like hybrid virus   gi|2814138529|gb|PQ313127.1| Viruses   Viruses   134.0   7.28e-27  
9972 9972 PRJNA558770_CONTIG_395313|Fish-associated_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA558770_CONTIG_395313|Fish-associated_parvo-like_hybrid_virus PRJNA558770_CONTIG_395313 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA558770 395313 159 4.362903 6.93701577 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 274.0 2.58e-69 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA558770_P_NODE_395313_length_159_cov_4.362903_g393308_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g393308 i0 98.089 1.333333333 157 3 99.0 0 3 159 830 674 212 274.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus   gi|2413975758|gb|OP933682.1| Viruses   Viruses   274.0   2.58e-69  
10052 10052 PRJNA558770_CONTIG_73018|Psittaciform_aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA558770_CONTIG_73018|Psittaciform_aveparvovirus PRJNA558770_CONTIG_73018 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA558770 73018 243 3.653846 8.87884578 Psittaciform aveparvovirus 3042447 Viruses Viruses 416.0 6.74e-112 Psittaciform aveparvovirus Non-phage NTclustered PRJNA558770_P_NODE_73018_length_243_cov_3.653846_g71013_i0   Psittaciform aveparvovirus strain OBP1/FE1/49/2021, partial genome gi|2496529060|gb|OP577480.1| 3042447 g71013 i0 97.541 1.004115226 244 4 100.0 2 1 243 1770 2012 244 416.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittaciform aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Psittaciform aveparvovirus Psittaciform aveparvovirus gi|2496529060|gb|OP577480.1| Viruses Viruses Viruses Viruses 416.0 101.0 6.74e-112 1.54e-23
10204 10204 PRJNA558770_CONTIG_52763|Fish-associated_parvo-like_hybrid_virus|CLUSTER3_Fish-associated_parvo-like_hybrid_virus|4|4 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA558770_CONTIG_52763|Fish-associated_parvo-like_hybrid_virus PRJNA558770_CONTIG_52763 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER3_Fish-associated_parvo-like_hybrid_virus|4|4 PRJNA784979_S_NODE_744_length_713_cov_4.688253_g709_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 4 4 PRJNA558770 52763 293 4.879845 14.29794585 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 233.0 9.04e-57 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA558770_P_NODE_52763_length_293_cov_4.879845_g50760_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g50760 i0 98.485 0.706484642 132 2 71.0 0 161 292 225 94 207 233.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus   gi|2413975758|gb|OP933682.1| Viruses   Viruses   233.0   9.04e-57  
10463 10463 PRJNA558770_CONTIG_45822|Luscinia_sibilans_parvo-like_hybrid_virus|CLUSTER3_Luscinia_sibilans_parvo-like_hybrid_virus|1|1 Luscinia sibilans parvo-like hybrid virus Endogenous or not fish-associated PRJNA558770_CONTIG_45822|Luscinia_sibilans_parvo-like_hybrid_virus PRJNA558770_CONTIG_45822 Luscinia sibilans parvo-like hybrid virus 8 5 4 CLUSTER3_Luscinia_sibilans_parvo-like_hybrid_virus|1|1 PRJNA558770_P_NODE_45822_length_317_cov_68.482270_g43823_i0|Luscinia_sibilans_parvo-like_hybrid_virus|NTclustered|1.05e-11|NA 1 1 PRJNA558770 45822 317 68.48227 217.0887959 Luscinia sibilans parvo-like hybrid virus 2794515 Viruses Viruses 84.2 1.05e-11 Luscinia sibilans parvo-like hybrid virus Non-phage NTclustered PRJNA558770_P_NODE_45822_length_317_cov_68.482270_g43823_i0   MAG: Luscinia sibilans parvo-like hybrid virus isolate rtr167par08 genomic sequence, sequence gi|2015373198|gb|MW046538.1| 2794515 g43823 i0 90.476 0.19873817 63 6 20.0 0 55 117 523 585 63 84.2 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Luscinia sibilans parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus Luscinia sibilans parvo-like hybrid virus   gi|2015373198|gb|MW046538.1| Viruses   Viruses   84.2   1.05e-11  
10492 10492 PRJNA558770_CONTIG_391010|Luscinia_sibilans_parvo-like_hybrid_virus|CLUSTER4_Luscinia_sibilans_parvo-like_hybrid_virus|1|1 Luscinia sibilans parvo-like hybrid virus Endogenous or not fish-associated PRJNA558770_CONTIG_391010|Luscinia_sibilans_parvo-like_hybrid_virus PRJNA558770_CONTIG_391010 Luscinia sibilans parvo-like hybrid virus 8 5 4 CLUSTER4_Luscinia_sibilans_parvo-like_hybrid_virus|1|1 PRJNA558770_P_NODE_391010_length_173_cov_3.318841_g389005_i0|Luscinia_sibilans_parvo-like_hybrid_virus|NR|1.33e-27|NA 1 1 PRJNA558770 391010 173 3.318841 5.74159493 Luscinia sibilans parvo-like hybrid virus 2794515 Viruses Viruses 113.0 1.3300000000000001e-27 Luscinia sibilans parvo-like hybrid virus Non-phage NR PRJNA558770_P_NODE_391010_length_173_cov_3.318841_g389005_i0   QTE03983.1 MAG: capsid protein, partial [Luscinia sibilans parvo-like hybrid virus] QTE03983.1 2794515 g389005 i0 91.2 0.988439306 57 5 98.8 0 3 173 388 444 171 113.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Luscinia sibilans parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus   Luscinia sibilans parvo-like hybrid virus     Viruses   Viruses   113.0   1.3300000000000001e-27

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;