RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where Category = "Endogenous or not fish-associated" and bioproject = "PRJNA556992"

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tax_family_NTorNR 2

bioproject 1

  • PRJNA556992 · 4 ✖

Category 1

  • Endogenous or not fish-associated · 4 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10051 10051 PRJNA556992_CONTIG_71210|Adintovirus_anguilla1|CLUSTER2_Adintovirus_anguilla1|12|3 Adintovirus anguilla10665 Endogenous or not fish-associated PRJNA556992_CONTIG_71210|Adintovirus_anguilla1 PRJNA556992_CONTIG_71210 Adintovirus anguilla1 34 19 10 CLUSTER2_Adintovirus_anguilla1|12|3 PRJNA1249535_S_NODE_11960_length_782_cov_16.507757_g9425_i0|Adintovirus_anguilla1|NR|1.27e-11|NA 12 3 PRJNA556992 71210 451 3.492063 15.74920413 Adintovirus anguilla1 3115889 Viruses Viruses 74.7 1.93e-13 Adintovirus anguilla1 Non-phage NR PRJNA556992_P_NODE_71210_length_451_cov_3.492063_g69035_i0   DBA49783.1 MAG TPA_asm: Adenain [Adintovirus anguilla10665] DBA49783.1 3115889 g69035 i0 31.1 0.87804878 132 81 85.8 4 449 63 42 166 396 74.7 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus anguilla10665 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665   Adintovirus anguilla1     Viruses   Viruses   74.7   1.93e-13
10071 10071 PRJNA556992_CONTIG_33478|Parvoviridae_sp.|CLUSTER2_Psittaciform_aveparvovirus|11|8 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA556992_CONTIG_33478|Parvoviridae_sp. PRJNA556992_CONTIG_33478 Psittaciform aveparvovirus 19 12 2 CLUSTER2_Psittaciform_aveparvovirus|11|8 PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0|Psittaciform_aveparvovirus|NTclustered|0|NA 11 8 PRJNA556992 33478 601 4.880682 29.33289882 Parvoviridae sp. 1940570 Viruses Viruses 300.0 1.69e-98 Parvoviridae sp. Non-phage NR PRJNA556992_P_NODE_33478_length_601_cov_4.880682_g31362_i0   XNT21000.1 MAG: replication protein [Parvoviridae sp.] XNT21000.1 1940570 g31362 i0 70.5 1.996672213 200 57 99.8 1 2 601 52 249 1200 300.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp. Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Flumine parvovirus 11 Parvoviridae sp. gi|2235497401|gb|OM953996.1| Viruses Viruses Viruses Viruses 255.0 300.0 4.22e-63 1.69e-98
10277 10277 PRJNA556992_CONTIG_316701|Pimephales_minnow_adintovirus|CLUSTER14_Pimephales_minnow_adintovirus|2|2 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA556992_CONTIG_316701|Pimephales_minnow_adintovirus PRJNA556992_CONTIG_316701 Pimephales minnow adintovirus 168 104 20 CLUSTER14_Pimephales_minnow_adintovirus|2|2 PRJNA556992_P_NODE_316701_length_286_cov_2.755869_g314512_i0|Pimephales_minnow_adintovirus|NR|8.34e-15|NA 2 2 PRJNA556992 316701 286 2.755869 7.88178534 Pimephales minnow adintovirus 2609864 Viruses Viruses 79.3 8.34e-15 Pimephales minnow adintovirus Non-phage NR PRJNA556992_P_NODE_316701_length_286_cov_2.755869_g314512_i0   DAC81392.1 TPA_asm: PolB-N [Pimephales minnow adintovirus] DAC81392.1 2609864 g314512 i0 46.2 3.902097902 93 50 97.6 0 284 6 515 607 1116 79.3 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   79.3   8.34e-15
10476 10476 PRJNA556992_CONTIG_72584|Phoenicopteridae_parvo-like_hybrid_virus|CLUSTER3_Phoenicopteridae_parvo-like_hybrid_virus|1|1 Phoenicopteridae parvo-like hybrid virus Endogenous or not fish-associated PRJNA556992_CONTIG_72584|Phoenicopteridae_parvo-like_hybrid_virus PRJNA556992_CONTIG_72584 Phoenicopteridae parvo-like hybrid virus 3 3 3 CLUSTER3_Phoenicopteridae_parvo-like_hybrid_virus|1|1 PRJNA556992_P_NODE_72584_length_448_cov_4.661333_g70408_i0|Phoenicopteridae_parvo-like_hybrid_virus|NR|2.29e-08|NA 1 1 PRJNA556992 72584 448 4.661333 20.88277184 Phoenicopteridae parvo-like hybrid virus 2794528 Viruses Viruses 63.2 2.29e-08 Phoenicopteridae parvo-like hybrid virus Non-phage NR PRJNA556992_P_NODE_72584_length_448_cov_4.661333_g70408_i0   QTE03745.1 MAG: hypothetical protein [Phoenicopteridae parvo-like hybrid virus] QTE03745.1 2794528 g70408 i0 32.9 0.9375 140 70 90.4 3 413 9 144 264 420 63.2 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Phoenicopteridae parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Phoenicopteridae parvo-like hybrid virus   Phoenicopteridae parvo-like hybrid virus     Viruses   Viruses   63.2   2.29e-08

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;