metadata: viruses_fish_associated_curated: 2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA312107" and tax_family

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA312107" and tax_family_NTorNR = "Oomyviridae"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9792	9792	PRJNA312107_CONTIG_21068\|Nicoomyvirus\|CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA312107_CONTIG_21068\|Nicoomyvirus	PRJNA312107_CONTIG_21068	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER1_Fish-associated_parvo-like_hybrid_virus\|21\|14	MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence	21	14	PRJNA312107	21068	167	0.881356	1.47186452	Nicoomyvirus	3425078	Viruses	Viruses	309.0	7.53e-80	Nicoomyvirus	Non-phage	NTclustered	PRJNA312107_P_NODE_21068_length_167_cov_0.881356_g20902_i0		Parvovirus NIH-CQV putative 15-kDa protein, putative replication associated protein (rep), and putative capsid protein (cap) genes, complete cds	gi\|530787446\|ref\|NC_022089.1\|	1341019	g20902	i0	100.0	15.0	167	0	100.0	0	1	167	885	1051	2505	309.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus moldensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus	Nicoomyvirus	Parvo-like hybrid virus UC9	gi\|530787446\|ref\|NC_022089.1\|	Viruses	Viruses	Viruses	Viruses	309.0	114.0	7.53e-80	1.47e-28
9968	9968	PRJNA312107_CONTIG_18951\|Grus_japonensis_parvo-like_hybrid_virus\|CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	Fish-associated parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA312107_CONTIG_18951\|Grus_japonensis_parvo-like_hybrid_virus	PRJNA312107_CONTIG_18951	Fish-associated parvo-like hybrid virus	35	19	4	CLUSTER2_Fish-associated_parvo-like_hybrid_virus\|14\|7	PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0\|Fish-associated_parvo-like_hybrid_virus\|NTclustered\|0\|NA	14	7	PRJNA312107	18951	169	0.866667	1.46466723	Grus japonensis parvo-like hybrid virus	2794511	Viruses	Viruses	45.1	0.0021	Grus japonensis parvo-like hybrid virus	Non-phage	NR	PRJNA312107_P_NODE_18951_length_169_cov_0.866667_g18785_i0		QTZ83196.1 MAG: capsid protein [Grus japonensis parvo-like hybrid virus]	QTZ83196.1	2794511	g18785	i0	64.5	0.550295858	31	11	55.0	0	1	93	299	329	93	45.1	1.0	Viruses	Monodnaviria	Shotokuvirae	Cressdnaviricota	Arfiviricetes	Lineavirales	Oomyviridae	Nicoomyvirus	Nicoomyvirus peneszensis	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus		Grus japonensis parvo-like hybrid virus			Viruses		Viruses		45.1		0.0021

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;