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viruses_fish_associated_curated

4 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA293022" and tax_species_NTorNR = "Salarius guttatus piscichuvirus"

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tax_species_NTorNR 1

  • Salarius guttatus piscichuvirus · 4 ✖

tax_genus_NTorNR 1

tax_family_NTorNR 1

bioproject 1

  • PRJNA293022 · 4 ✖

Category 1

  • Endogenous or not fish-associated · 4 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8136 8136 PRJNA293022_CONTIG_40988|Salarius_guttatus_piscichuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA293022_CONTIG_40988|Salarius_guttatus_piscichuvirus PRJNA293022_CONTIG_40988 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA293022 40988 218 1.349112 2.94106416 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 47.8 0.000472 Salarius guttatus piscichuvirus Non-phage NR PRJNA293022_P_NODE_40988_length_218_cov_1.349112_g40251_i0   UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus] UVF58767.1 2951531 g40251 i0 37.3 1.032110092 75 43 97.7 2 215 3 58 132 225 47.8 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   Salarius guttatus piscichuvirus     Viruses   Viruses   47.8   0.000472
10433 10433 PRJNA293022_CONTIG_25640|Salarius_guttatus_piscichuvirus|CLUSTER3_Salarius_guttatus_piscichuvirus|1|1 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA293022_CONTIG_25640|Salarius_guttatus_piscichuvirus PRJNA293022_CONTIG_25640 Salarius guttatus piscichuvirus 67 58 5 CLUSTER3_Salarius_guttatus_piscichuvirus|1|1 PRJNA293022_P_NODE_25640_length_279_cov_1.347826_g24903_i0|Salarius_guttatus_piscichuvirus|NR|8.22e-20|NA 1 1 PRJNA293022 25640 279 1.347826 3.76043454 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 93.6 8.22e-20 Salarius guttatus piscichuvirus Non-phage NR PRJNA293022_P_NODE_25640_length_279_cov_1.347826_g24903_i0   UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus] UVF58767.1 2951531 g24903 i0 50.5 0.978494624 91 42 94.6 2 270 7 1430 1520 273 93.6 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Salarius guttatus piscichuvirus     Viruses   Viruses   93.6   8.22e-20
10436 10436 PRJNA293022_CONTIG_27190|Salarius_guttatus_piscichuvirus|CLUSTER4_Salarius_guttatus_piscichuvirus|1|1 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA293022_CONTIG_27190|Salarius_guttatus_piscichuvirus PRJNA293022_CONTIG_27190 Salarius guttatus piscichuvirus 67 58 5 CLUSTER4_Salarius_guttatus_piscichuvirus|1|1 PRJNA293022_P_NODE_27190_length_270_cov_1.574661_g26453_i0|Salarius_guttatus_piscichuvirus|NR|1.63e-08|NA 1 1 PRJNA293022 27190 270 1.574661 4.2515847 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 61.2 1.63e-08 Salarius guttatus piscichuvirus Non-phage NR PRJNA293022_P_NODE_27190_length_270_cov_1.574661_g26453_i0   UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus] UVF58767.1 2951531 g26453 i0 47.9 0.533333333 48 25 53.3 0 148 5 1027 1074 144 61.2 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Salarius guttatus piscichuvirus     Viruses   Viruses   61.2   1.63e-08
10450 10450 PRJNA293022_CONTIG_37175|Salarius_guttatus_piscichuvirus|CLUSTER5_Salarius_guttatus_piscichuvirus|1|1 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA293022_CONTIG_37175|Salarius_guttatus_piscichuvirus PRJNA293022_CONTIG_37175 Salarius guttatus piscichuvirus 67 58 5 CLUSTER5_Salarius_guttatus_piscichuvirus|1|1 PRJNA293022_P_NODE_37175_length_229_cov_1.716667_g36438_i0|Salarius_guttatus_piscichuvirus|NR|6.27e-26|NA 1 1 PRJNA293022 37175 229 1.716667 3.93116743 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 110.0 6.270000000000001e-26 Salarius guttatus piscichuvirus Non-phage NR PRJNA293022_P_NODE_37175_length_229_cov_1.716667_g36438_i0   UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus] UVF58767.1 2951531 g36438 i0 74.6 0.825327511 63 16 82.5 0 32 220 580 642 189 110.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Salarius guttatus piscichuvirus     Viruses   Viruses   110.0   6.270000000000001e-26

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;