metadata: viruses_fish_associated_curated: 2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA1249042" and clusterLCA

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJNA1249042" and clusterLCA_curated = "Adintovirus anguilla10665"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10469	10469	PRJNA1249042_CONTIG_51448\|Adintovirus_anguilla1\|CLUSTER8_Adintovirus_anguilla1\|1\|1	Adintovirus anguilla10665	Endogenous or not fish-associated	PRJNA1249042_CONTIG_51448\|Adintovirus_anguilla1	PRJNA1249042_CONTIG_51448	Adintovirus anguilla1	34	19	10	CLUSTER8_Adintovirus_anguilla1\|1\|1	PRJNA1249042_S_NODE_51448_length_208_cov_2.272727_g51234_i0\|Adintovirus_anguilla1\|NR\|1.23e-20\|NA	1	1	PRJNA1249042	51448	208	2.272727	4.72727216	Adintovirus anguilla1	3115889	Viruses	Viruses	91.7	1.23e-20	Adintovirus anguilla1	Non-phage	NR	PRJNA1249042_S_NODE_51448_length_208_cov_2.272727_g51234_i0		DBA49784.1 MAG TPA_asm: Adintoc2 [Adintovirus anguilla10665]	DBA49784.1	3115889	g51234	i0	56.5	1.990384615	69	30	99.5	0	207	1	122	190	414	91.7	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Adintovirus anguilla10665	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665		Adintovirus anguilla1			Viruses		Viruses		91.7		1.23e-20
10482	10482	PRJNA1249042_CONTIG_113789\|Adintovirus_anguilla1\|CLUSTER9_Adintovirus_anguilla1\|1\|1	Adintovirus anguilla10665	Endogenous or not fish-associated	PRJNA1249042_CONTIG_113789\|Adintovirus_anguilla1	PRJNA1249042_CONTIG_113789	Adintovirus anguilla1	34	19	10	CLUSTER9_Adintovirus_anguilla1\|1\|1	PRJNA1249042_S_NODE_113789_length_152_cov_1.321101_g113575_i0\|Adintovirus_anguilla1\|NR\|1.27e-10\|NA	1	1	PRJNA1249042	113789	152	1.321101	2.00807352	Adintovirus anguilla1	3115889	Viruses	Viruses	65.1	1.27e-10	Adintovirus anguilla1	Non-phage	NR	PRJNA1249042_S_NODE_113789_length_152_cov_1.321101_g113575_i0		DBA49779.1 MAG TPA_asm: Integrase [Adintovirus anguilla10665]	DBA49779.1	3115889	g113575	i0	68.1	0.927631579	47	15	92.8	0	2	142	23	69	141	65.1	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Adintovirus anguilla10665	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665		Adintovirus anguilla1			Viruses		Viruses		65.1		1.27e-10

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;