RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

viruses_fish_associated_curated

8 rows where Category = "Endogenous or not fish-associated" and bioproject = "PRJNA1237347"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_family_NTorNR 2

tax_genus_NTorNR 1

bioproject 1

  • PRJNA1237347 · 8 ✖

Category 1

  • Endogenous or not fish-associated · 8 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8147 8147 PRJNA1237347_CONTIG_98760|African_cichlid_piscichuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA1237347_CONTIG_98760|African_cichlid_piscichuvirus PRJNA1237347_CONTIG_98760 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA1237347 98760 687 1.754072 12.05047464 African cichlid piscichuvirus 3065075 Viruses Viruses 130.0 1.29e-30 African cichlid piscichuvirus Non-phage NR PRJNA1237347_P_NODE_98760_length_687_cov_1.754072_g92386_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g92386 i0 46.4 0.602620087 138 74 60.3 0 665 252 97 234 414 130.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   130.0   1.29e-30
9852 9852 PRJNA1237347_CONTIG_497924|Pimephales_minnow_adintovirus|CLUSTER3_Pimephales_minnow_adintovirus|19|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_497924|Pimephales_minnow_adintovirus PRJNA1237347_CONTIG_497924 Pimephales minnow adintovirus 168 104 20 CLUSTER3_Pimephales_minnow_adintovirus|19|15 PRJEB66218_P_NODE_46828_length_500_cov_1.141230_g44412_i0|Pimephales_minnow_adintovirus|NR|1e-20|NA 19 15 PRJNA1237347 497924 248 0.88 2.1824 Pimephales minnow adintovirus 2609864 Viruses Viruses 60.5 1.12e-08 Pimephales minnow adintovirus Non-phage NR PRJNA1237347_P_NODE_497924_length_248_cov_0.880000_g491351_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g491351 i0 55.1 0.592741935 49 22 59.3 0 97 243 14 62 147 60.5 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   60.5   1.12e-08
9853 9853 PRJNA1237347_CONTIG_501046|Pimephales_minnow_adintovirus|CLUSTER3_Pimephales_minnow_adintovirus|19|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_501046|Pimephales_minnow_adintovirus PRJNA1237347_CONTIG_501046 Pimephales minnow adintovirus 168 104 20 CLUSTER3_Pimephales_minnow_adintovirus|19|15 PRJEB66218_P_NODE_46828_length_500_cov_1.141230_g44412_i0|Pimephales_minnow_adintovirus|NR|1e-20|NA 19 15 PRJNA1237347 501046 247 2.402299 5.93367853 Pimephales minnow adintovirus 2609864 Viruses Viruses 94.4 1.4e-21 Pimephales minnow adintovirus Non-phage NR PRJNA1237347_P_NODE_501046_length_247_cov_2.402299_g494473_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g494473 i0 53.1 0.983805668 81 38 98.4 0 2 244 33 113 243 94.4 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   94.4   1.4e-21
9854 9854 PRJNA1237347_CONTIG_562468|Adintovirus_pavo15764|CLUSTER3_Pimephales_minnow_adintovirus|19|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_562468|Adintovirus_pavo15764 PRJNA1237347_CONTIG_562468 Pimephales minnow adintovirus 168 104 20 CLUSTER3_Pimephales_minnow_adintovirus|19|15 PRJEB66218_P_NODE_46828_length_500_cov_1.141230_g44412_i0|Pimephales_minnow_adintovirus|NR|1e-20|NA 19 15 PRJNA1237347 562468 233 2.6625 6.203625 Adintovirus pavo15764 3115938 Viruses Viruses 72.8 1.84e-13 Adintovirus pavo15764 Non-phage NR PRJNA1237347_P_NODE_562468_length_233_cov_2.662500_g555894_i0   DBA50340.1 MAG TPA_asm: PacK [Adintovirus pavo15764] DBA50340.1 3115938 g555894 i0 47.3 1.944206009 74 39 95.3 0 10 231 82 155 453 72.8 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus pavo15764 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Adintovirus pavo15764     Viruses   Viruses   72.8   1.84e-13
10091 10091 PRJNA1237347_CONTIG_556932|Pimephales_minnow_adintovirus|CLUSTER6_Pimephales_minnow_adintovirus|10|9 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_556932|Pimephales_minnow_adintovirus PRJNA1237347_CONTIG_556932 Pimephales minnow adintovirus 168 104 20 CLUSTER6_Pimephales_minnow_adintovirus|10|9 PRJEB66218_P_NODE_83127_length_345_cov_0.922535_g80700_i0|Pimephales_minnow_adintovirus|NR|3.45e-17|NA 10 9 PRJNA1237347 556932 241 0.916667 2.20916747 Pimephales minnow adintovirus 2609864 Viruses Viruses 72.0 3.88e-14 Pimephales minnow adintovirus Non-phage NR PRJNA1237347_P_NODE_556932_length_241_cov_0.916667_g550359_i0   DAC81395.1 TPA_asm: gasderminX [Pimephales minnow adintovirus] DAC81395.1 2609864 g550359 i0 66.1 1.692946058 59 20 73.4 0 64 240 1 59 408 72.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   72.0   3.88e-14
10176 10176 PRJNA1237347_CONTIG_306011|Adintovirus_bos4377|CLUSTER7_Pimephales_minnow_adintovirus|5|5 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_306011|Adintovirus_bos4377 PRJNA1237347_CONTIG_306011 Pimephales minnow adintovirus 168 104 20 CLUSTER7_Pimephales_minnow_adintovirus|5|5 PRJEB673_P_NODE_3515_length_532_cov_2.076459_g3194_i0|Pimephales_minnow_adintovirus|NR|1.09e-50|NA 4 4 PRJNA1237347 306011 330 1.198444 3.9548652 Adintovirus bos4377 3115894 Viruses Viruses 127.0 1.2800000000000002e-32 Adintovirus bos4377 Non-phage NR PRJNA1237347_P_NODE_306011_length_330_cov_1.198444_g299438_i0   DBA50491.1 MAG TPA_asm: Integrase [Adintovirus bos4377] DBA50491.1 3115894 g299438 i0 63.6 4.0 110 40 100.0 0 330 1 46 155 1320 128.0 0.9921875 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus bos4377 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Adintovirus bos4377     Viruses   Viruses   127.0   1.2800000000000002e-32
10276 10276 PRJNA1237347_CONTIG_304902|Pimephales_minnow_adintovirus|CLUSTER12_Pimephales_minnow_adintovirus|2|2 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1237347_CONTIG_304902|Pimephales_minnow_adintovirus PRJNA1237347_CONTIG_304902 Pimephales minnow adintovirus 168 104 20 CLUSTER12_Pimephales_minnow_adintovirus|2|2 PRJNA1237347_P_NODE_304902_length_331_cov_0.767442_g298329_i0|Pimephales_minnow_adintovirus|NR|6.08e-20|NA 2 2 PRJNA1237347 304902 331 0.767442 2.54023302 Pimephales minnow adintovirus 2609864 Viruses Viruses 94.7 6.08e-20 Pimephales minnow adintovirus Non-phage NR PRJNA1237347_P_NODE_304902_length_331_cov_0.767442_g298329_i0   DAC81392.1 TPA_asm: PolB-N [Pimephales minnow adintovirus] DAC81392.1 2609864 g298329 i0 51.4 2.936555891 107 52 97.0 0 10 330 226 332 972 94.7 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   94.7   6.08e-20
10491 10491 PRJNA1237347_CONTIG_369550|Leatherback_sea_turtle_adomavirus|CLUSTER2_Leatherback_sea_turtle_adomavirus|1|1 Leatherback sea turtle adomavirus Endogenous or not fish-associated PRJNA1237347_CONTIG_369550|Leatherback_sea_turtle_adomavirus PRJNA1237347_CONTIG_369550 Leatherback sea turtle adomavirus 2 2 2 CLUSTER2_Leatherback_sea_turtle_adomavirus|1|1 PRJNA1237347_P_NODE_369550_length_293_cov_1.395455_g362977_i0|Leatherback_sea_turtle_adomavirus|NR|0.00154|NA 1 1 PRJNA1237347 369550 293 1.395455 4.08868315 Leatherback sea turtle adomavirus 2707294 Viruses Viruses 47.4 0.00154 Leatherback sea turtle adomavirus Non-phage NR PRJNA1237347_P_NODE_369550_length_293_cov_1.395455_g362977_i0   DAC81231.1 TPA_asm: EO3 [Leatherback sea turtle adomavirus] DAC81231.1 2707294 g362977 i0 34.5 0.593856655 58 38 59.4 0 78 251 366 423 174 47.4 1.0 Viruses Adomaviruses             Leatherback sea turtle adomavirus Viruses;Adomaviruses;Leatherback sea turtle adomavirus   Leatherback sea turtle adomavirus     Viruses   Viruses   47.4   0.00154

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;