RNAquarium Metadata Server
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viruses_fish_associated_curated

5 rows where Category = "Endogenous or not fish-associated" and bioproject = "PRJEB14803"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

  • PRJEB14803 · 5 ✖

Category 1

  • Endogenous or not fish-associated · 5 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9844 9844 PRJEB14803_CONTIG_37692|Pimephales_minnow_adintovirus|CLUSTER3_Pimephales_minnow_adintovirus|19|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJEB14803_CONTIG_37692|Pimephales_minnow_adintovirus PRJEB14803_CONTIG_37692 Pimephales minnow adintovirus 168 104 20 CLUSTER3_Pimephales_minnow_adintovirus|19|15 PRJEB66218_P_NODE_46828_length_500_cov_1.141230_g44412_i0|Pimephales_minnow_adintovirus|NR|1e-20|NA 19 15 PRJEB14803 37692 172 0.956204 1.64467088 Pimephales minnow adintovirus 2609864 Viruses Viruses 67.4 1.05e-11 Pimephales minnow adintovirus Non-phage NR PRJEB14803_P_NODE_37692_length_172_cov_0.956204_g37226_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g37226 i0 50.0 0.976744186 56 28 97.7 0 2 169 41 96 168 67.4 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   67.4   1.05e-11
9877 9877 PRJEB14803_CONTIG_25023|Pimephales_minnow_adintovirus|CLUSTER4_Pimephales_minnow_adintovirus|18|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJEB14803_CONTIG_25023|Pimephales_minnow_adintovirus PRJEB14803_CONTIG_25023 Pimephales minnow adintovirus 168 104 20 CLUSTER4_Pimephales_minnow_adintovirus|18|15 PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0|Pimephales_minnow_adintovirus|NR|7.76e-34|NA 18 15 PRJEB14803 25023 223 1.180851 2.63329773 Pimephales minnow adintovirus 2609864 Viruses Viruses 85.1 2.13e-19 Pimephales minnow adintovirus Non-phage NR PRJEB14803_P_NODE_25023_length_223_cov_1.180851_g24557_i0   DAC81395.1 TPA_asm: gasderminX [Pimephales minnow adintovirus] DAC81395.1 2609864 g24557 i0 55.4 0.995515695 74 33 99.6 0 2 223 15 88 222 85.1 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   85.1   2.13e-19
10086 10086 PRJEB14803_CONTIG_19958|Pimephales_minnow_adintovirus|CLUSTER6_Pimephales_minnow_adintovirus|10|9 Pimephales minnow adintovirus Endogenous or not fish-associated PRJEB14803_CONTIG_19958|Pimephales_minnow_adintovirus PRJEB14803_CONTIG_19958 Pimephales minnow adintovirus 168 104 20 CLUSTER6_Pimephales_minnow_adintovirus|10|9 PRJEB66218_P_NODE_83127_length_345_cov_0.922535_g80700_i0|Pimephales_minnow_adintovirus|NR|3.45e-17|NA 10 9 PRJEB14803 19958 259 3.366071 8.71812389 Pimephales minnow adintovirus 2609864 Viruses Viruses 90.1 3.5e-21 Pimephales minnow adintovirus Non-phage NR PRJEB14803_P_NODE_19958_length_259_cov_3.366071_g19492_i0   DAC81395.1 TPA_asm: gasderminX [Pimephales minnow adintovirus] DAC81395.1 2609864 g19492 i0 62.4 0.984555985 85 32 98.5 0 257 3 4 88 255 90.1 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   90.1   3.5e-21
10170 10170 PRJEB14803_CONTIG_23672|Pimephales_minnow_adintovirus|CLUSTER7_Pimephales_minnow_adintovirus|5|5 Pimephales minnow adintovirus Endogenous or not fish-associated PRJEB14803_CONTIG_23672|Pimephales_minnow_adintovirus PRJEB14803_CONTIG_23672 Pimephales minnow adintovirus 168 104 20 CLUSTER7_Pimephales_minnow_adintovirus|5|5 PRJEB673_P_NODE_3515_length_532_cov_2.076459_g3194_i0|Pimephales_minnow_adintovirus|NR|1.09e-50|NA 4 4 PRJEB14803 23672 231 1.658163 3.83035653 Pimephales minnow adintovirus 2609864 Viruses Viruses 99.4 1.05e-22 Pimephales minnow adintovirus Non-phage NR PRJEB14803_P_NODE_23672_length_231_cov_1.658163_g23206_i0   DAC81401.1 TPA_asm: integrase [Pimephales minnow adintovirus] DAC81401.1 2609864 g23206 i0 70.7 2.922077922 75 22 97.4 0 6 230 19 93 675 99.4 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   99.4   1.05e-22
10262 10262 PRJEB14803_CONTIG_15406|Pimephales_minnow_adintovirus|CLUSTER13_Pimephales_minnow_adintovirus|2|2 Pimephales minnow adintovirus Endogenous or not fish-associated PRJEB14803_CONTIG_15406|Pimephales_minnow_adintovirus PRJEB14803_CONTIG_15406 Pimephales minnow adintovirus 168 104 20 CLUSTER13_Pimephales_minnow_adintovirus|2|2 PRJEB14803_P_NODE_15406_length_307_cov_5.761029_g14940_i0|Pimephales_minnow_adintovirus|NR|1.49e-19|NA 2 2 PRJEB14803 15406 307 5.761029 17.68635903 Pimephales minnow adintovirus 2609864 Viruses Viruses 90.9 1.49e-19 Pimephales minnow adintovirus Non-phage NR PRJEB14803_P_NODE_15406_length_307_cov_5.761029_g14940_i0   DAC81400.1 TPA_asm: penton [Pimephales minnow adintovirus] DAC81400.1 2609864 g14940 i0 45.5 0.986970684 101 55 98.7 0 303 1 93 193 303 90.9 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   90.9   1.49e-19

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;