metadata: viruses_fish_associated_curated: 2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJEB10140" and clusterLCA

2 rows where Category = "Endogenous or not fish-associated", bioproject = "PRJEB10140" and clusterLCA_curated = "Psittacidae aveparvovirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10223	10223	PRJEB10140_CONTIG_118258\|Parvoviridae_sp.\|CLUSTER2_Psittacidae_aveparvovirus\|3\|3	Psittacidae aveparvovirus	Endogenous or not fish-associated	PRJEB10140_CONTIG_118258\|Parvoviridae_sp.	PRJEB10140_CONTIG_118258	Psittacidae aveparvovirus	18	10	4	CLUSTER2_Psittacidae_aveparvovirus\|3\|3	PRJNA630162_P_NODE_16732_length_457_cov_2.938725_g15229_i0\|Psittacidae_aveparvovirus\|NR\|1.21e-18\|NA	3	3	PRJEB10140	118258	309	2.111538	6.52465242	Parvoviridae sp.	1940570	Viruses	Viruses	64.7	1.46e-09	Parvoviridae sp.	Non-phage	NR	PRJEB10140_P_NODE_118258_length_309_cov_2.111538_g100952_i0		QKE54887.1 MAG: replication protein [Parvoviridae sp.]	QKE54887.1	1940570	g100952	i0	37.4	1.922330097	99	55	94.2	3	300	10	70	163	594	64.7	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae		Parvoviridae sp.	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus		Parvoviridae sp.			Viruses		Viruses		64.7		1.46e-09
10489	10489	PRJEB10140_CONTIG_251847\|Psittacidae_aveparvovirus\|CLUSTER4_Psittacidae_aveparvovirus\|1\|1	Psittacidae aveparvovirus	Endogenous or not fish-associated	PRJEB10140_CONTIG_251847\|Psittacidae_aveparvovirus	PRJEB10140_CONTIG_251847	Psittacidae aveparvovirus	18	10	4	CLUSTER4_Psittacidae_aveparvovirus\|1\|1	PRJEB10140_P_NODE_251847_length_168_cov_0.873950_g234538_i0\|Psittacidae_aveparvovirus\|NR\|3.45e-16\|NA	1	1	PRJEB10140	251847	168	0.87395	1.468236	Psittacidae aveparvovirus	2794556	Viruses	Viruses	81.3	3.45e-16	Psittacidae aveparvovirus	Non-phage	NR	PRJEB10140_P_NODE_251847_length_168_cov_0.873950_g234538_i0		QTE03752.1 MAG: hypothetical protein [Psittacidae aveparvovirus]	QTE03752.1	2794556	g234538	i0	61.8	0.982142857	55	21	98.2	0	166	2	305	359	165	81.3	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae	Aveparvovirus	Psittacidae aveparvovirus	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus		Psittacidae aveparvovirus			Viruses		Viruses		81.3		3.45e-16

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;