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run_metadata

8 rows where experiment.platform = "ION_TORRENT" and tissue_curation_coarse = "Liver and Biliary System"

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tissue_curation_coarse 1

  • Liver and Biliary System · 8 ✖

tissue_curation 1

technology 1

experiment.platform 1

  • ION_TORRENT · 8 ✖

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
62854 62854 SRR13440556 SRX9853978 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO GD 4 DIO GD 4 DIO with GD treatment     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO_GD-4 fastq 4457846127.0 35434325.0 DIO GD 4 0:125.81 A:1132283216;C:1070720177;G:1157322546;T:1097520188;N:0 125       1132283216 1070720177 1157322546 1097520188 0 SRX9853978 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.61358   0.13617   0.87896   0.27516   178   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-14 Adult Adult Liver Liver and Biliary System
62855 62855 SRR13440557 SRX9853977 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO GD 3 DIO GD 3 DIO with GD treatment     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO_GD-3 fastq 2209140756.0 21626130.0 DIO GD 3 0:102.15 A:583812333;C:487262915;G:584943625;T:553121883;N:0 102       583812333 487262915 584943625 553121883 0 SRX9853977 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.63225   0.1658   0.86379   0.37214   92   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-14 Adult Adult Liver Liver and Biliary System
62856 62856 SRR13440558 SRX9853976 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO GD 2 DIO GD 2 DIO with GD treatment     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO_GD-2 fastq 1777323103.0 18933651.0 DIO GD 2 0:93.87 A:464601836;C:413760770;G:460577599;T:438382898;N:0 93       464601836 413760770 460577599 438382898 0 SRX9853976 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.65849   0.15297   0.84135   0.3349   101   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-14 Adult Adult Liver Liver and Biliary System
62857 62857 SRR13440559 SRX9853975 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO GD 1 DIO GD 1 DIO with GD treatment     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO_GD-1 fastq 3107066238.0 25095995.0 DIO GD 1 0:123.81 A:793240480;C:738189877;G:777063754;T:798572127;N:0 123       793240480 738189877 777063754 798572127 0 SRX9853975 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.7426   0.17704   0.89051   0.25099   52   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-14 Adult Adult Liver Liver and Biliary System
62858 62858 SRR13440560 SRX9853974 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO 4 DIO 4 Diet incuced obesity DIO     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO-4 fastq 2329004075.0 20271175.0 DIO 4 0:114.89 A:567452533;C:570566957;G:621549245;T:569435340;N:0 114       567452533 570566957 621549245 569435340 0 SRX9853974 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.84548   0.27189   0.86198   0.45426   122   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-14 Adult Adult Liver Liver and Biliary System
62859 62859 SRR13440561 SRX9853973 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO 3 DIO 3 Diet incuced obesity DIO     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO-3 fastq 2346162628.0 19400931.0 DIO 3 0:120.93 A:579812559;C:570332195;G:613738317;T:582279557;N:0 120       579812559 570332195 613738317 582279557 0 SRX9853973 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.78629   0.25304   0.89041   0.35231   150   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-14 Adult Adult Liver Liver and Biliary System
62860 62860 SRR13440562 SRX9853972 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO 2 DIO 2 Diet incuced obesity DIO     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO-2 fastq 3553599859.0 32601495.0 DIO 2 0:109.00 A:888818483;C:851068166;G:947933039;T:865780171;N:0 109       888818483 851068166 947933039 865780171 0 SRX9853972 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.86167   0.31911   0.86206   0.66264   174   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-20 Adult Adult Liver Liver and Biliary System
62861 62861 SRR13440563 SRX9853971 SRS8035408 SRP301838 PRJNA691414 Transcriptomic analysis of GD treated zebrafish liver PRJNA691414 Other Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment.       Zebrafish liver from AB strain GD DIO Zebrafish   strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio: adult female liver DIO 1 DIO 1 Diet incuced obesity DIO     RNA-Seq TRANSCRIPTOMIC PCR SINGLE ION_TORRENT Ion Torrent Proton   SRP301838     DIO-1 fastq 2554201974.0 21594302.0 DIO 1 0:118.28 A:631716258;C:620459753;G:664379409;T:637646554;N:0 118       631716258 620459753 664379409 637646554 0 SRX9853971 SRS8035408 SRA1184195 Mie University|Graduate School of Regional Innovation Studies Mie University 1 0.77174   0.21322   0.89962   0.33158   240   B   usable mapping rate ion_torrent ion_torrent unknown random_priming unknown bulk unknown unknown   Japan 2021-01-20 Adult Adult Liver Liver and Biliary System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;