metadata: run_metadata: 9 rows where experiment.platform = "DNBSEQ" and tissue_curation

9 rows where experiment.platform = "DNBSEQ" and tissue_curation_coarse = "Digestive System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
34517	34517	SRR32044795	SRX27393953	SRS23824014	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Cr+VC 3	I	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 14\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 14\|health state:health\|sample type:tissue\|replication:Cr+VC 3\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Cr+VC 3	Cr+VC 3	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Cr+VC-3.R1.raw.fastq.gz Cr+VC-3.R2.raw.fastq.gz	fastq fastq	6773536558.0	22428929.0	Cr+VC 3.R1.raw.fastq.gz	0:151 1:151	A:1792253952;C:1581454013;G:1629330621;T:1770470694;N:27278	151	151	1792253952	1581454013	1629330621	1770470694	27278	SRX27393953	SRS23824014	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34518	34518	SRR32044796	SRX27393952	SRS23824013	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Cr+VC 2	H	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 14\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 14\|health state:health\|sample type:tissue\|replication:Cr+VC 2\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Cr+VC 2	Cr+VC 2	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Cr+VC-2.R1.raw.fastq.gz Cr+VC-2.R2.raw.fastq.gz	fastq fastq	7449518862.0	24667281.0	Cr+VC 2.R1.raw.fastq.gz	0:151 1:151	A:1969693675;C:1748150730;G:1771267240;T:1960378098;N:29119	151	151	1969693675	1748150730	1771267240	1960378098	29119	SRX27393952	SRS23824013	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34519	34519	SRR32044797	SRX27393951	SRS23824012	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Cr+VC 1	G	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 14\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 14\|health state:health\|sample type:tissue\|replication:Cr+VC 1\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Cr+VC 1	Cr+VC 1	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295	loader:fastq load.py\|options: doNotUseSharq	Cr+VC-1.R1.raw.fastq Cr+VC-1.R2.raw.fastq	fastq fastq	6865491179.0	45466829.0	Cr+VC 1.R1.raw.fastq.gz	0:151	A:1830069736;C:1600281531;G:1626303427;T:1808809011;N:27474	151		1830069736	1600281531	1626303427	1808809011	27474	SRX27393951	SRS23824012	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B		usable mapping rate	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34520	34520	SRR32044798	SRX27393950	SRS23824011	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Cr 3	F	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 13\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 13\|health state:health\|sample type:tissue\|replication:Cr 3\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Cr 3	Cr 3	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Cr-3.R1.raw.fastq.gz Cr-3.R2.raw.fastq.gz	fastq fastq	6069804078.0	20098689.0	Cr 3.R1.raw.fastq.gz	0:151 1:151	A:1603886661;C:1431213970;G:1440806224;T:1593873144;N:24079	151	151	1603886661	1431213970	1440806224	1593873144	24079	SRX27393950	SRS23824011	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34521	34521	SRR32044799	SRX27393949	SRS23824010	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Cr 2	E	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 13\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 13\|health state:health\|sample type:tissue\|replication:Cr 2\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Cr 2	Cr 2	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295	loader:fastq load.py\|options: doNotUseSharq	Cr-2.R1.raw.fastq Cr-2.R2.raw.fastq	fastq fastq	8327156985.0	55146735.0	Cr 2.R1.raw.fastq.gz	0:151	A:2181317777;C:1974793526;G:2003240106;T:2167771431;N:34145	151		2181317777	1974793526	2003240106	2167771431	34145	SRX27393949	SRS23824010	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B		usable mapping rate	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34522	34522	SRR32044800	SRX27393948	SRS23824009	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Cr 1	D	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 13\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 13\|health state:health\|sample type:tissue\|replication:Cr 1\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Cr 1	Cr 1	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Cr-1.R1.raw.fastq.gz Cr-1.R2.raw.fastq.gz	fastq fastq	7322067614.0	24245257.0	Cr 1.R1.raw.fastq.gz	0:151 1:151	A:1927213281;C:1727973559;G:1748866497;T:1917985720;N:28557	151	151	1927213281	1727973559	1748866497	1917985720	28557	SRX27393948	SRS23824009	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34523	34523	SRR32044801	SRX27393947	SRS23824008	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Con 3	C	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 12\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 12\|health state:health\|sample type:tissue\|replication:Con 3\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Con 3	Con 3	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Con-3.R1.raw.fastq.gz Con-3.R2.raw.fastq.gz	fastq fastq	10329187314.0	34202607.0	Con 3.R1.raw.fastq.gz	0:151 1:151	A:2805764955;C:2343400161;G:2421657823;T:2758323021;N:41354	151	151	2805764955	2343400161	2421657823	2758323021	41354	SRX27393947	SRS23824008	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34524	34524	SRR32044802	SRX27393946	SRS23824007	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Con 2	B	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 12\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 12\|health state:health\|sample type:tissue\|replication:Con 2\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Con 2	Con 2	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Con-2.R1.raw.fastq.gz Con-2.R2.raw.fastq.gz	fastq fastq	10789961398.0	35728349.0	Con 2.R1.raw.fastq.gz	0:151 1:151	A:2983305704;C:2396592872;G:2488165589;T:2921853880;N:43353	151	151	2983305704	2396592872	2488165589	2921853880	43353	SRX27393946	SRS23824007	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System
34525	34525	SRR32044803	SRX27393945	SRS23824006	SRP558295	PRJNA1212482	vitamin C mitigated hexavalent chromium toxicity by microbiota gut brain axis in zebrafish	PRJNA1212482	Other	Zebrafish is characterized by small size rapid development high fertility short life cycle easy and economical rearing; it has now become one of the model organisms for drug screening disease research and ecological environment evaluation. Therefore this project takes zebrafish as a model organism as the research object and intends to study the role of vitamins in alleviating gut hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology transcriptome molecular biology and other techniques.	Con 1	A	ecotype:wild type zebrafish\|age:6 month\|dev stage:adult\|collection date:2023 08 12\|geo loc name:China: Haikou Hainan Province\|sex:pooled male and female\|tissue:gut\|death date:2023 8 12\|health state:health\|sample type:tissue\|replication:Con 1\|BioSampleModel:Model organism or animal	RNA Seq of brian:Adult female and male zebrafish	Con 1	Con 1	normal	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	DNBSEQ	DNBSEQ-T7	SRP558295		Con-1.R1.raw.fastq.gz Con-1.R2.raw.fastq.gz	fastq fastq	7118179260.0	23570130.0	Con 1.R1.raw.fastq.gz	0:151 1:151	A:1874284939;C:1673861890;G:1718740497;T:1851263659;N:28275	151	151	1874284939	1673861890	1718740497	1851263659	28275	SRX27393945	SRS23824006	SRA2054568	Hainan University\|School of Life and Health Sciences	Hainan University	B	B	biological fallback assumption	bgi	bgi	unknown	cdna_unspecified	unknown	sc	single_cell_droplet	10x	China	2025-01-19	Adult	Adult	Gut	Digestive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;