metadata: run_metadata: 15 rows where experiment.platform = "BGISEQ" and tissue

15 rows where experiment.platform = "BGISEQ" and tissue_curation = "Gut"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.nofeature_rate.mate1	seqdetective.sparsity.mate1	seqdetective.pos_strand_rate.mate1	seqdetective.readlen.mate1	seqdetective.judgement.mate1	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
60007	60007	SRR12109607	SRX8633610	SRS6920345	SRP269241	PRJNA641989	Zebrafish intestinal SmallRNA	PRJNA641989	Other	A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.	Drt3	strain:Streptococcus agalactiae\|age:adult\|sex:male\|tissue:gut\|BioSampleModel:Model organism or animal	miRNA Seq of zebrafish intestine	F	F	BGISEQ	miRNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	BGISEQ	BGISEQ-500	SRP269241	loader:fastq load.py	Drt3.fq.gz	fastq	953116651.0	39450392.0	Drt3.fq.gz	0:24.16	A:165275545;C:266933722;G:285524079;T:235383107;N:198	24		165275545	266933722	285524079	235383107	198	SRX8633610	SRS6920345	SRA1092425	Kunming University of Science and Technology\|faculty of life science and technology	Kunming University of Science and Technology	1	0.86243	0.21541	0.80294	0.67181	29	B	usable mapping rate	bgi	bgi	unknown	small_rna	unknown	bulk	unknown	unknown	China	2020-07-10	Adult	Adult	Gut	Digestive System
60008	60008	SRR12109608	SRX8633609	SRS6920344	SRP269241	PRJNA641989	Zebrafish intestinal SmallRNA	PRJNA641989	Other	A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.	Drt2	strain:Streptococcus agalactiae\|age:adult\|sex:male\|tissue:gut\|BioSampleModel:Model organism or animal	miRNA Seq of zebrafish intestine	E	E	BGISEQ	miRNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	BGISEQ	BGISEQ-500	SRP269241	loader:fastq load.py	Drt2.fq.gz	fastq	629335361.0	26037543.0	Drt2.fq.gz	0:24.17	A:111827613;C:172564695;G:192159133;T:152783892;N:28	24		111827613	172564695	192159133	152783892	28	SRX8633609	SRS6920344	SRA1092425	Kunming University of Science and Technology\|faculty of life science and technology	Kunming University of Science and Technology	1	0.86328	0.21943	0.7992	0.64786	26	B	usable mapping rate	bgi	bgi	unknown	small_rna	unknown	bulk	unknown	unknown	China	2020-07-10	Adult	Adult	Gut	Digestive System
60009	60009	SRR12109609	SRX8633608	SRS6920343	SRP269241	PRJNA641989	Zebrafish intestinal SmallRNA	PRJNA641989	Other	A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.	Drt1	strain:Streptococcus agalactiae\|age:adult\|sex:male\|tissue:gut\|BioSampleModel:Model organism or animal	miRNA Seq of zebrafish intestine	D	D	BGISEQ	miRNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	BGISEQ	BGISEQ-500	SRP269241	loader:fastq load.py	Drt1.fq.gz	fastq	898185854.0	37273958.0	Drt1.fq.gz	0:24.10	A:155257170;C:247725871;G:276963807;T:218238980;N:26	24		155257170	247725871	276963807	218238980	26	SRX8633608	SRS6920343	SRA1092425	Kunming University of Science and Technology\|faculty of life science and technology	Kunming University of Science and Technology	1	0.86686	0.21764	0.79508	0.6694	24	B	usable mapping rate	bgi	bgi	unknown	small_rna	unknown	bulk	unknown	unknown	China	2020-07-10	Adult	Adult	Gut	Digestive System
60010	60010	SRR12109610	SRX8633607	SRS6920342	SRP269241	PRJNA641989	Zebrafish intestinal SmallRNA	PRJNA641989	Other	A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.	Drc3	strain:Streptococcus agalactiae\|age:adult\|sex:male\|tissue:gut\|BioSampleModel:Model organism or animal	miRNA Seq of zebrafish intestine	C	C	BGISEQ	miRNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	BGISEQ	BGISEQ-500	SRP269241	loader:fastq load.py	Drc3.fq.gz	fastq	912782161.0	35931507.0	Drc3.fq.gz	0:25.40	A:153448479;C:252628189;G:280829895;T:225874586;N:1012	25		153448479	252628189	280829895	225874586	1012	SRX8633607	SRS6920342	SRA1092425	Kunming University of Science and Technology\|faculty of life science and technology	Kunming University of Science and Technology	1	0.89797	0.21308	0.80823	0.62611	23	B	usable mapping rate	bgi	bgi	unknown	small_rna	unknown	bulk	unknown	unknown	China	2020-07-10	Adult	Adult	Gut	Digestive System
60011	60011	SRR12109611	SRX8633606	SRS6920341	SRP269241	PRJNA641989	Zebrafish intestinal SmallRNA	PRJNA641989	Other	A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.	Drc2	strain:Streptococcus agalactiae\|age:adult\|sex:male\|tissue:gut\|BioSampleModel:Model organism or animal	miRNA Seq of zebrafish intestine	B	B	BGISEQ	miRNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	BGISEQ	BGISEQ-500	SRP269241	loader:fastq load.py	Drc2.fq.gz	fastq	784553020.0	31429473.0	Drc2.fq.gz	0:24.96	A:128271350;C:223302609;G:241310233;T:191668193;N:635	24		128271350	223302609	241310233	191668193	635	SRX8633606	SRS6920341	SRA1092425	Kunming University of Science and Technology\|faculty of life science and technology	Kunming University of Science and Technology	1	0.9087	0.20487	0.80805	0.67324	30	B	usable mapping rate	bgi	bgi	unknown	small_rna	unknown	bulk	unknown	unknown	China	2020-07-10	Adult	Adult	Gut	Digestive System
60012	60012	SRR12109612	SRX8633605	SRS6920340	SRP269241	PRJNA641989	Zebrafish intestinal SmallRNA	PRJNA641989	Other	A model of streptococcus agalactiae infected zebrafish was established to determine intestinal small RNA of zebrafish.To explore the molecular mechanism of antibacterial immunity of zebrafish.	Drc1	strain:Streptococcus agalactiae\|age:adult\|sex:male\|tissue:gut\|BioSampleModel:Model organism or animal	miRNA Seq of zebrafish intestine	A	A	BGISEQ	miRNA-Seq	TRANSCRIPTOMIC	RT-PCR	SINGLE	BGISEQ	BGISEQ-500	SRP269241	loader:fastq load.py	Drc1.fq.gz	fastq	814894343.0	32234530.0	Drc1.fq.gz	0:25.28	A:133616147;C:230834630;G:253965304;T:196477437;N:825	25		133616147	230834630	253965304	196477437	825	SRX8633605	SRS6920340	SRA1092425	Kunming University of Science and Technology\|faculty of life science and technology	Kunming University of Science and Technology	1	0.89344	0.21273	0.80738	0.66815	28	B	usable mapping rate	bgi	bgi	unknown	small_rna	unknown	bulk	unknown	unknown	China	2020-07-10	Adult	Adult	Gut	Digestive System
74161	74161	SRR23576625	SRX19463432	SRS16856055	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M9	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut WT R3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M9	M9	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M9_1.fq.gz M9_2.fq.gz	fastq fastq	10791781600.0	107917816.0	M9 1.fq.gz	0:100 1:100	A:2848108353;C:2487301410;G:2561260439;T:2895111398;N:0	100	100	2848108353	2487301410	2561260439	2895111398	0	SRX19463432	SRS16856055	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95252	0.05974	0.79184	0.6274	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74162	74162	SRR23576626	SRX19463431	SRS16856054	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M8	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut WT R2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M8	M8	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M8_1.fq.gz M8_2.fq.gz	fastq fastq	10803624400.0	108036244.0	M8 1.fq.gz	0:100 1:100	A:2826927335;C:2516499907;G:2585204327;T:2874992831;N:0	100	100	2826927335	2516499907	2585204327	2874992831	0	SRX19463431	SRS16856054	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95494	0.06268	0.79139	0.60873	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74163	74163	SRR23576627	SRX19463430	SRS16856053	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M7	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut WT R1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M7	M7	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M7_1.fq.gz M7_2.fq.gz	fastq fastq	10794944600.0	107949446.0	M7 1.fq.gz	0:100 1:100	A:2822800001;C:2515936087;G:2583221720;T:2872986792;N:0	100	100	2822800001	2515936087	2583221720	2872986792	0	SRX19463430	SRS16856053	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95392	0.0552	0.78967	0.61766	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74164	74164	SRR23576628	SRX19463429	SRS16856052	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M6	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut tert with Cre R3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M6	M6	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M6_1.fq.gz M6_2.fq.gz	fastq fastq	10806717200.0	108067172.0	M6 1.fq.gz	0:100 1:100	A:2872422644;C:2476696362;G:2537205428;T:2920392766;N:0	100	100	2872422644	2476696362	2537205428	2920392766	0	SRX19463429	SRS16856052	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95383	0.06563	0.79293	0.63948	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74165	74165	SRR23576629	SRX19463428	SRS16856051	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M5	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut tert with Cre R2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M5	M5	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M5_1.fq.gz M5_2.fq.gz	fastq fastq	10553024000.0	105530240.0	M5 1.fq.gz	0:100 1:100	A:2756587901;C:2467885042;G:2531072385;T:2797478672;N:0	100	100	2756587901	2467885042	2531072385	2797478672	0	SRX19463428	SRS16856051	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95761	0.05754	0.79435	0.61791	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74166	74166	SRR23576630	SRX19463427	SRS16856048	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M4	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut tert with Cre R1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M4	M4	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M4_1.fq.gz M4_2.fq.gz	fastq fastq	10821109400.0	108211094.0	M4 1.fq.gz	0:100 1:100	A:2853720356;C:2500021520;G:2567460910;T:2899906614;N:0	100	100	2853720356	2500021520	2567460910	2899906614	0	SRX19463427	SRS16856048	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95171	0.0636	0.78644	0.61061	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74174	74174	SRR23576638	SRX19463419	SRS16856040	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M3	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut tert without xxx R3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M3	M3	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M3_1.fq.gz M3_2.fq.gz	fastq fastq	10811204400.0	108112044.0	M3 1.fq.gz	0:100 1:100	A:2826338851;C:2514522241;G:2594843889;T:2875499419;N:0	100	100	2826338851	2514522241	2594843889	2875499419	0	SRX19463419	SRS16856040	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95049	0.05611	0.79127	0.60997	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74185	74185	SRR23576649	SRX19463408	SRS16856031	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M2	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut tert without xxx R2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M2	M2	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M2_1.fq.gz M2_2.fq.gz	fastq fastq	10784874600.0	107848746.0	M2 1.fq.gz	0:100 1:100	A:2800268243;C:2532669517;G:2601088355;T:2850848485;N:0	100	100	2800268243	2532669517	2601088355	2850848485	0	SRX19463408	SRS16856031	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95513	0.05808	0.78171	0.60306	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System
74186	74186	SRR23576650	SRX19463407	SRS16856030	SRP423783	PRJNA937311	Telomere elongation in the gut extends systemic healthspan of zebrafish	PRJNA937311	Other	Telomere shortening is a hallmark of aging and is counteracted by telomerase. zebrafish gut is one of the organs with the fastest rate of telomere decline. However whether telomere dependent aging of an individual organ the gut causes systemic aging remains unknown. Here we show that preventing telomere shortening in the gut through tissue specific telomerase expression rescues premature aging of tert / . Conclusively we show that gut specific telomerase expression extends lifespan of tert / by 40 % while ameliorating natural aging. Our work demonstrates that delaying telomere shortening in the gut is sufficient to systemically counteract aging in zebrafish.	M1	strain:AB\|age:9 month\|dev stage:adulte\|sex:male\|tissue:gut\|biomaterial provider:EL MAI Mounir\|birth date:2019/11/20\|birth location:Nice France\|treatment:gut tert without xxx R1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio : adult male gut	M1	M1	RNA Seq of Danio rerio : adult male gut	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	BGISEQ	BGISEQ-500	SRP423783		M1_1.fq.gz M1_2.fq.gz	fastq fastq	10797666400.0	107976664.0	M1 1.fq.gz	0:100 1:100	A:2818869037;C:2522566664;G:2592727107;T:2863503592;N:0	100	100	2818869037	2522566664	2592727107	2863503592	0	SRX19463407	SRS16856030	SRA1593824	Sun Yat-sen University Cancer Center\|State Key Laboratory of Oncology in South China	Sun Yat-sen University Cancer Center Miguel Godinho Ferreira	1	0.95195	0.06111	0.78184	0.6129	100	B	usable mapping rate	bgi	bgi	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-02-21	Adult	Adult	Gut	Digestive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;