RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

run_metadata

30 rows where experiment.library_strategy = "miRNA-Seq", technology = "unknown" and tissue_curation = "Trunk"

✎ View and edit SQL

This data as json, CSV (advanced)

experiment.platform 3

experiment.library_selection 3

devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

tissue_curation 1

  • Trunk · 30 ✖

technology 1

  • unknown · 30 ✖

experiment.library_strategy 1

  • miRNA-Seq · 30 ✖

experiment.library_source 1

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
32541 32541 SRR29303120 SRX24820197 SRS21534299 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L6H 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 10|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L6H 1 L6H 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L6H_1.fq.gz fastq 619966455.0 12156205.0 L6H 1.fq.gz 0:51 A:143411079;C:162001488;G:168382605;T:146007422;N:163861 51       143411079 162001488 168382605 146007422 163861 SRX24820197 SRS21534299 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01303   0.00337   0.99472   0.5628   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32542 32542 SRR29303121 SRX24820196 SRS21534298 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L3H 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 09|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L3H 3 L3H 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L3H_3.fq.gz fastq 738125703.0 14473053.0 L3H 3.fq.gz 0:51 A:176614297;C:190760467;G:197157923;T:173400138;N:192878 51       176614297 190760467 197157923 173400138 192878 SRX24820196 SRS21534298 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01163   0.00356   0.99379   0.55469   51   T   under 1.2% mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32543 32543 SRR29303122 SRX24820195 SRS21534297 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L3H 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 08|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L3H 2 L3H 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L3H_2.fq.gz fastq 489154821.0 9591271.0 L3H 2.fq.gz 0:51 A:109695797;C:132121151;G:127787221;T:119539033;N:11619 51       109695797 132121151 127787221 119539033 11619 SRX24820195 SRS21534297 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.05359   0.01132   0.98924   0.55364   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32544 32544 SRR29303123 SRX24820194 SRS21534296 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L3H 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 07|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L3H 1 L3H 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L3H_1.fq.gz fastq 551502015.0 10813765.0 L3H 1.fq.gz 0:51 A:130437158;C:141969110;G:146479841;T:132605147;N:10759 51       130437158 141969110 146479841 132605147 10759 SRX24820194 SRS21534296 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.13403   0.01834   0.98735   0.54849   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32545 32545 SRR29303124 SRX24820193 SRS21534295 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L1H 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 06|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L1H 3 L1H 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L1H_3.fq.gz fastq 524533827.0 10284977.0 L1H 3.fq.gz 0:51 A:118598837;C:136729611;G:142993590;T:126201873;N:9916 51       118598837 136729611 142993590 126201873 9916 SRX24820193 SRS21534295 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.00829   0.00187   0.99472   0.54701   51   T   under 1.2% mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32546 32546 SRR29303125 SRX24820192 SRS21534294 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L1H 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 05|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L1H 2 L1H 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L1H_2.fq.gz fastq 541697163.0 10621513.0 L1H 2.fq.gz 0:51 A:126751483;C:135818134;G:141122995;T:137953543;N:51008 51       126751483 135818134 141122995 137953543 51008 SRX24820192 SRS21534294 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.33438   0.08101   0.98238   0.53337   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32547 32547 SRR29303126 SRX24820191 SRS21534293 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L1H 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 04|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L1H 1 L1H 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L1H_1.fq.gz fastq 930096282.0 18237182.0 L1H 1.fq.gz 0:51 A:212568445;C:243497911;G:260145458;T:213851032;N:33436 51       212568445 243497911 260145458 213851032 33436 SRX24820191 SRS21534293 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.64143   0.02683   0.98683   0.5342   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32548 32548 SRR29303127 SRX24820190 SRS21534292 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         DD 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 03|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae DD 3 DD 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     DD_3.fq.gz fastq 667459389.0 13087439.0 DD 3.fq.gz 0:51 A:157267065;C:168909886;G:178336724;T:162865168;N:80546 51       157267065 168909886 178336724 162865168 80546 SRX24820190 SRS21534292 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.19375   0.03528   0.98827   0.55124   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32549 32549 SRR29303128 SRX24820189 SRS21534291 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L6H 3 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 12|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L6H 3 L6H 3 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L6H_3.fq.gz fastq 551181072.0 10807472.0 L6H 3.fq.gz 0:51 A:126813056;C:141881980;G:147676363;T:134665008;N:144665 51       126813056 141881980 147676363 134665008 144665 SRX24820189 SRS21534291 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.09301   0.01507   0.99042   0.54323   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32550 32550 SRR29303129 SRX24820188 SRS21534290 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         L6H 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 11|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae L6H 2 L6H 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     L6H_2.fq.gz fastq 571762632.0 11211032.0 L6H 2.fq.gz 0:51 A:138521192;C:148068464;G:150615597;T:134408189;N:149190 51       138521192 148068464 150615597 134408189 149190 SRX24820188 SRS21534290 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01523   0.00336   0.9933   0.57685   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32551 32551 SRR29303130 SRX24820187 SRS21534289 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         DD 2 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 02|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae DD 2 DD 2 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     DD_2.fq.gz fastq 706940937.0 13861587.0 DD 2.fq.gz 0:51 A:162899595;C:189209828;G:187422113;T:167222837;N:186564 51       162899595 189209828 187422113 167222837 186564 SRX24820187 SRS21534289 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.02266   0.00566   0.99334   0.56959   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
32552 32552 SRR29303131 SRX24820186 SRS21534288 SRP512097 PRJNA1120592 Light induce Zebrafish larvae PRJNA1120592 Other Light induce Zebrafish larvae miRNA         DD 1 miRNA   breed:zebrafish|cultivar:not applicable|ecotype:AB|age:5 dpf|dev stage:larvae|collection date:2020 10 01|geo loc name:China: Lanzhou|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA seq of zebrafish larvae DD 1 DD 1 miRNA seq     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE ILLUMINA Illumina HiSeq 3000   SRP512097     DD_1.fq.gz fastq 540332862.0 10594762.0 DD 1.fq.gz 0:51 A:127336994;C:143901414;G:142437491;T:126515166;N:141797 51       127336994 143901414 142437491 126515166 141797 SRX24820186 SRS21534288 SRA1890590 Lanzhou University|College of Life Science Lanzhou University 1 0.01404   0.00313   0.99484   0.56573   51   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-06-06 Larval Larval Trunk Surface Structure
41421 41421 SRR4423115 SRX2245299 SRS1745859 SRP091534 PRJNA347637 Danio rerio and Xenopus laevis Raw sequence reads PRJNA347637 Other To study the transcriptome during development         Adult MWB Dr   strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:Adult|sex:male|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA Seq of Zebrafish: Adult male whole body 94 3 94 3 Libraries were generated according to the manufacturers’ protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress™ RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 µl ethanol instead of 120 µl during purification of cDNA and 134 µl ethanol instead of 110 µl in protocol.     miRNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent Proton   SRP091534     maleRID0094BC03smallZF.fastq fastq 697814234.0 14408051.0 maleRID0094BC03smallZF.fastq 0:48.43 A:165337411;C:177790468;G:184204311;T:170482044;N:0 48       165337411 177790468 184204311 170482044 0 SRX2245299 SRS1745859 SRA485147 Universiteit van Amsterdam|SILS Universiteit van Amsterdam 1 0.70426   0.16215   0.91027   0.5459   120   B   usable mapping rate ion_torrent ion_torrent unknown small_rna unknown bulk unknown unknown   Netherlands 2016-10-19 Adult Adult Trunk Surface Structure
41425 41425 SRR4423111 SRX2245295 SRS1745859 SRP091534 PRJNA347637 Danio rerio and Xenopus laevis Raw sequence reads PRJNA347637 Other To study the transcriptome during development         Adult MWB Dr   strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:Adult|sex:male|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA Seq of Zebrafish: Adult male whole body 88 3 88 3 Libraries were generated according to the manufacturers’ protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress™ RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 µl ethanol instead of 120 µl during purification of cDNA and 134 µl ethanol instead of 110 µl in protocol.     miRNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent Proton   SRP091534     maleRID0088BC03smallZF.fastq fastq 523776538.0 11118832.0 maleRID0088BC03smallZF.fastq 0:47.11 A:123827431;C:133478804;G:138882662;T:127587641;N:0 47       123827431 133478804 138882662 127587641 0 SRX2245295 SRS1745859 SRA485147 Universiteit van Amsterdam|SILS Universiteit van Amsterdam 1 0.69556   0.16368   0.9093   0.54838   22   B   usable mapping rate ion_torrent ion_torrent unknown small_rna unknown bulk unknown unknown   Netherlands 2016-10-19 Adult Adult Trunk Surface Structure
41427 41427 SRR4423109 SRX2245293 SRS1745859 SRP091534 PRJNA347637 Danio rerio and Xenopus laevis Raw sequence reads PRJNA347637 Other To study the transcriptome during development         Adult MWB Dr   strain:not applicable|isolate:not applicable|breed:ABTL|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:Adult|sex:male|tissue:whole body|BioSampleModel:Model organism or animal                 miRNA Seq of Zebrafish: Adult male whole body 93 3 93 3 Libraries were generated according to the manufacturers’ protocols using the Ion Total RNA Seq Kit v2 and the Ion Xpress™ RNA Seq bar coding kit Thermo Fisher Scientific. A few modifications were made during purification steps in the small RNAseq to allow sequencing of longer RNAs up to 200 nt than with standard sRNA protocols. Namely: 153 µl ethanol instead of 120 µl during purification of cDNA and 134 µl ethanol instead of 110 µl in protocol.     miRNA-Seq TRANSCRIPTOMIC cDNA SINGLE ION_TORRENT Ion Torrent Proton   SRP091534     maleRID0093BC03smallZF.fastq fastq 692750598.0 14286031.0 maleRID0093BC03smallZF.fastq 0:48.49 A:164412063;C:176380331;G:182539801;T:169418403;N:0 48       164412063 176380331 182539801 169418403 0 SRX2245293 SRS1745859 SRA485147 Universiteit van Amsterdam|SILS Universiteit van Amsterdam 1 0.70738   0.16645   0.90948   0.55306   22   B   usable mapping rate ion_torrent ion_torrent unknown small_rna unknown bulk unknown unknown   Netherlands 2016-10-19 Adult Adult Trunk Surface Structure
71643 71643 SRR21869762 SRX17856938 SRS15377982 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE H 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 15|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221124 AT20221124 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py BHEE_H_3.fq.gz fastq 533428889.0 23211223.0 BHEE H 3.fq.gz 0:22.98 A:120057830;C:104713991;G:142506271;T:166150296;N:501 22       120057830 104713991 142506271 166150296 501 SRX17856938 SRS15377982 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.79272   0.10596   0.92431   0.52918   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71644 71644 SRR21869763 SRX17856937 SRS15377981 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE H 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 14|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221123 AT20221123 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py BHEE_H_2.fq.gz fastq 542237520.0 23757627.0 BHEE H 2.fq.gz 0:22.82 A:118608004;C:107602147;G:146341292;T:169685803;N:274 22       118608004 107602147 146341292 169685803 274 SRX17856937 SRS15377981 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.78829   0.10064   0.91346   0.52625   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71645 71645 SRR21869764 SRX17856936 SRS15377980 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE H 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 13|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221122 AT20221122 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py BHEE_H_1.fq.gz fastq 553437966.0 24068768.0 BHEE H 1.fq.gz 0:22.99 A:123764056;C:109954264;G:151884637;T:167834745;N:264 22       123764056 109954264 151884637 167834745 264 SRX17856936 SRS15377980 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.70849   0.09465   0.91768   0.52194   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71646 71646 SRR21869765 SRX17856935 SRS15377979 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE L 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 12|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221121 AT20221121 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py BHEE_L_3.fq.gz fastq 534633614.0 23823089.0 BHEE L 3.fq.gz 0:22.44 A:117363754;C:102332510;G:134833529;T:180103711;N:110 22       117363754 102332510 134833529 180103711 110 SRX17856935 SRS15377979 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.91988   0.08325   0.94073   0.53253   23   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71647 71647 SRR21869766 SRX17856934 SRS15377978 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE L 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 11|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221120 AT20221120 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py BHEE_L_2.fq.gz fastq 544854900.0 24226737.0 BHEE L 2.fq.gz 0:22.49 A:119782823;C:104902871;G:136756907;T:183412172;N:127 22       119782823 104902871 136756907 183412172 127 SRX17856934 SRS15377978 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.93474   0.08179   0.9345   0.52916   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71648 71648 SRR21869767 SRX17856933 SRS15377990 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         BHEE L 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 10|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221119 AT20221119 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py BHEE_L_1.fq.gz fastq 536871966.0 23768969.0 BHEE L 1.fq.gz 0:22.59 A:117321330;C:102381550;G:133641788;T:183527144;N:154 22       117321330 102381550 133641788 183527144 154 SRX17856933 SRS15377990 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.94042   0.08986   0.93141   0.51821   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71649 71649 SRR21869768 SRX17856932 SRS15377989 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA H 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 9|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221118 AT20221118 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py TBBPA_H_3.fq.gz fastq 528430937.0 23464221.0 TBBPA H 3.fq.gz 0:22.52 A:115261465;C:101477007;G:136961367;T:174730904;N:194 22       115261465 101477007 136961367 174730904 194 SRX17856932 SRS15377989 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.89616   0.09929   0.93042   0.5004   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71650 71650 SRR21869769 SRX17856931 SRS15377988 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA H 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 8|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221117 AT20221117 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py TBBPA_H_2.fq.gz fastq 523343500.0 22888420.0 TBBPA H 2.fq.gz 0:22.86 A:114272050;C:101352294;G:133914155;T:173804699;N:302 22       114272050 101352294 133914155 173804699 302 SRX17856931 SRS15377988 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.90842   0.10759   0.92088   0.53284   20   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71651 71651 SRR21869770 SRX17856930 SRS15377987 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA H 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 7|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221116 AT20221116 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py TBBPA_H_1.fq.gz fastq 538481195.0 23517366.0 TBBPA H 1.fq.gz 0:22.90 A:117132485;C:106262580;G:143962997;T:171122739;N:394 22       117132485 106262580 143962997 171122739 394 SRX17856930 SRS15377987 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.83673   0.10787   0.91238   0.53365   21   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71652 71652 SRR21869771 SRX17856929 SRS15377986 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA L 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 6|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221115 AT20221115 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py TBBPA_L_3.fq.gz fastq 536529124.0 23817957.0 TBBPA L 3.fq.gz 0:22.53 A:115664153;C:104457844;G:136444705;T:179962303;N:119 22       115664153 104457844 136444705 179962303 119 SRX17856929 SRS15377986 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.86178   0.09041   0.93624   0.4992   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71654 71654 SRR21869773 SRX17856927 SRS15377985 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA L 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 5|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221114 AT20221114 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py TBBPA_L_2.fq.gz fastq 525712427.0 23458446.0 TBBPA L 2.fq.gz 0:22.41 A:115172158;C:103930973;G:133832634;T:172776555;N:107 22       115172158 103930973 133832634 172776555 107 SRX17856927 SRS15377985 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.87223   0.08526   0.93845   0.54116   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71655 71655 SRR21869774 SRX17856926 SRS15377984 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         TBBPA L 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 4|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221113 AT20221113 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py TBBPA_L_1.fq.gz fastq 527804519.0 23370082.0 TBBPA L 1.fq.gz 0:22.58 A:114266025;C:102477479;G:134403120;T:176657729;N:166 22       114266025 102477479 134403120 176657729 166 SRX17856926 SRS15377984 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.89339   0.09635   0.92608   0.48415   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71656 71656 SRR21869775 SRX17856925 SRS15377983 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         Control 3   replicate:biological replicate 3|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 3|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221112 AT20221112 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py Control_3.fq.gz fastq 535579212.0 23899710.0 Control 3.fq.gz 0:22.41 A:117125157;C:106586085;G:133001456;T:178866289;N:225 22       117125157 106586085 133001456 178866289 225 SRX17856925 SRS15377983 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.89094   0.06851   0.94807   0.54835   23   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71657 71657 SRR21869776 SRX17856924 SRS15377977 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         Control 2   replicate:biological replicate 2|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 2|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221111 AT20221111 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py Control_2.fq.gz fastq 528466892.0 23430674.0 Control 2.fq.gz 0:22.55 A:116361274;C:103960709;G:132758802;T:175385846;N:261 22       116361274 103960709 132758802 175385846 261 SRX17856924 SRS15377977 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.89063   0.07453   0.94255   0.54503   21   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure
71658 71658 SRR21869777 SRX17856923 SRS15377976 SRP402080 PRJNA889683 miRNA mRNA sequencing of zebrafish embryos PRJNA889683 Other miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE         Control 1   replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 1|BioSampleModel:Model organism or animal                 miRNA Seq of zebrafish larvae AT20221110 AT20221110 miRNA Seq of zebrafish larvae     miRNA-Seq TRANSCRIPTOMIC size fractionation SINGLE BGISEQ BGISEQ-500   SRP402080   loader:fastq load.py Control_1.fq.gz fastq 517484481.0 23046792.0 Control 1.fq.gz 0:22.45 A:114187486;C:101456491;G:129311971;T:172528320;N:213 22       114187486 101456491 129311971 172528320 213 SRX17856923 SRS15377976 SRA1518395 Jiangsu University|School of Environment and Safety Engineering Jiangsu University 1 0.89811   0.07533   0.93198   0.55322   22   B   usable mapping rate bgi bgi unknown size_fractionation unknown bulk unknown unknown   China 2022-10-12 Larval Larval Trunk Surface Structure

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;