run_metadata
54 rows where experiment.library_strategy = "RNA-Seq" and technology = "detct"
This data as json, CSV (advanced)
| Link | rowid ▼ | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14955 | 14955 | ERR273897 | ERX248173 | ERS195633 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886535 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886535|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 9 4 sibling sc 2012 11 27T16:31:09Z 1518920|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 4 sibling sc 2012 11 27T16:31:09Z 1518920|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#18 | 6469787 | Illumina sequencing of library 6469787 constructed from sample accession ERS195633 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GTGAAA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#18.bam | bam | 1167136950.0 | 7780913.0 | SC RUN 9217 8#18 | 0:75 1:75 | A:315760982;C:270544972;G:268438227;T:311996744;N:396025 | 75 | 75 | 315760982 | 270544972 | 268438227 | 311996744 | 396025 | ERX248173 | ERS195633 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94493 | 0.94481 | 0.12785 | 0.12954 | 0.66273 | 0.66383 | 0.473 | 0.47976 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14956 | 14956 | ERR273896 | ERX248172 | ERS195632 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886533 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886533|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 4 mutant sc 2012 11 27T16:31:09Z 1518919|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 4 mutant sc 2012 11 27T16:31:09Z 1518919|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#17 | 6469786 | Illumina sequencing of library 6469786 constructed from sample accession ERS195632 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GTCCGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#17.bam | bam | 1245293700.0 | 8301958.0 | SC RUN 9217 8#17 | 0:75 1:75 | A:333543249;C:292618729;G:289116878;T:329601483;N:413361 | 75 | 75 | 333543249 | 292618729 | 289116878 | 329601483 | 413361 | ERX248172 | ERS195632 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.9484 | 0.94742 | 0.11829 | 0.11843 | 0.6719 | 0.67393 | 0.47406 | 0.47437 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14957 | 14957 | ERR273895 | ERX248171 | ERS195631 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886536 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886536|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 3 sibling sc 2012 11 27T16:31:07Z 1518918|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 3 sibling sc 2012 11 27T16:31:07Z 1518918|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#16 | 6469785 | Illumina sequencing of library 6469785 constructed from sample accession ERS195631 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence CCGTCC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#16.bam | bam | 1501477500.0 | 10009850.0 | SC RUN 9217 8#16 | 0:75 1:75 | A:403701344;C:350714711;G:346158446;T:400408231;N:494768 | 75 | 75 | 403701344 | 350714711 | 346158446 | 400408231 | 494768 | ERX248171 | ERS195631 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94646 | 0.94571 | 0.12843 | 0.12841 | 0.65957 | 0.66127 | 0.46791 | 0.46962 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14958 | 14958 | ERR273894 | ERX248170 | ERS195630 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886530 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886530|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 9 3 mutant sc 2012 11 27T16:31:07Z 1518917|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 3 mutant sc 2012 11 27T16:31:07Z 1518917|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#15 | 6469784 | Illumina sequencing of library 6469784 constructed from sample accession ERS195630 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence ATGTCA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#15.bam | bam | 1231830900.0 | 8212206.0 | SC RUN 9217 8#15 | 0:75 1:75 | A:332688456;C:286523517;G:281681021;T:330516412;N:421494 | 75 | 75 | 332688456 | 286523517 | 281681021 | 330516412 | 421494 | ERX248170 | ERS195630 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94763 | 0.94738 | 0.11589 | 0.11636 | 0.6618 | 0.66336 | 0.44862 | 0.44667 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14959 | 14959 | ERR273893 | ERX248169 | ERS195629 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886531 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886531|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 2 sibling sc 2012 11 27T16:31:06Z 1518916|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 2 sibling sc 2012 11 27T16:31:06Z 1518916|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#14 | 6469783 | Illumina sequencing of library 6469783 constructed from sample accession ERS195629 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence AGTTCC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#14.bam | bam | 1033533450.0 | 6890223.0 | SC RUN 9217 8#14 | 0:75 1:75 | A:280954350;C:238531162;G:235205653;T:278501819;N:340466 | 75 | 75 | 280954350 | 238531162 | 235205653 | 278501819 | 340466 | ERX248169 | ERS195629 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94427 | 0.94441 | 0.13107 | 0.13165 | 0.65608 | 0.65786 | 0.46362 | 0.46338 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14960 | 14960 | ERR273892 | ERX248168 | ERS195628 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886528 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886528|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 2 mutant sc 2012 11 27T16:31:04Z 1518915|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 2 mutant sc 2012 11 27T16:31:04Z 1518915|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#13 | 6469782 | Illumina sequencing of library 6469782 constructed from sample accession ERS195628 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence AGTCAA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#13.bam | bam | 1155764400.0 | 7705096.0 | SC RUN 9217 8#13 | 0:75 1:75 | A:309013919;C:272016691;G:267513813;T:306832234;N:387743 | 75 | 75 | 309013919 | 272016691 | 267513813 | 306832234 | 387743 | ERX248168 | ERS195628 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94812 | 0.94849 | 0.12398 | 0.12482 | 0.66588 | 0.66841 | 0.47511 | 0.48101 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14961 | 14961 | ERR273891 | ERX248167 | ERS195627 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886541 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886541|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#12 | 6469781 | Illumina sequencing of library 6469781 constructed from sample accession ERS195627 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence CTTGTA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#12.bam | bam | 2310315300.0 | 15402102.0 | SC RUN 9217 8#12 | 0:75 1:75 | A:633594099;C:528401095;G:519606107;T:627942641;N:771358 | 75 | 75 | 633594099 | 528401095 | 519606107 | 627942641 | 771358 | ERX248167 | ERS195627 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94121 | 0.94009 | 0.12841 | 0.12876 | 0.67614 | 0.67748 | 0.46095 | 0.46798 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14962 | 14962 | ERR273890 | ERX248166 | ERS195626 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886538 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886538|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#11 | 6469780 | Illumina sequencing of library 6469780 constructed from sample accession ERS195626 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GGCTAC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#11.bam | bam | 2197512300.0 | 14650082.0 | SC RUN 9217 8#11 | 0:75 1:75 | A:605841388;C:499071036;G:493858260;T:598012836;N:728780 | 75 | 75 | 605841388 | 499071036 | 493858260 | 598012836 | 728780 | ERX248166 | ERS195626 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93682 | 0.93652 | 0.14468 | 0.14508 | 0.67714 | 0.67886 | 0.45342 | 0.44383 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14963 | 14963 | ERR273889 | ERX248165 | ERS195625 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886532 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886532|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#10 | 6469779 | Illumina sequencing of library 6469779 constructed from sample accession ERS195625 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence TAGCTT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#10.bam | bam | 1518899700.0 | 10125998.0 | SC RUN 9217 8#10 | 0:75 1:75 | A:412046756;C:352073795;G:347037471;T:407229340;N:512338 | 75 | 75 | 412046756 | 352073795 | 347037471 | 407229340 | 512338 | ERX248165 | ERS195625 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94329 | 0.9435 | 0.1358 | 0.13787 | 0.68298 | 0.68436 | 0.47871 | 0.47678 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14964 | 14964 | ERR273888 | ERX248164 | ERS195624 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886539 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886539|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#9 | 6469778 | Illumina sequencing of library 6469778 constructed from sample accession ERS195624 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GATCAG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#9.bam | bam | 1605688950.0 | 10704593.0 | SC RUN 9217 8#9 | 0:75 1:75 | A:439236098;C:368742547;G:361235163;T:435943464;N:531678 | 75 | 75 | 439236098 | 368742547 | 361235163 | 435943464 | 531678 | ERX248164 | ERS195624 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93915 | 0.93882 | 0.13923 | 0.13977 | 0.67468 | 0.67663 | 0.4507 | 0.45363 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14965 | 14965 | ERR273887 | ERX248163 | ERS195623 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886537 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886537|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#8 | 6469777 | Illumina sequencing of library 6469777 constructed from sample accession ERS195623 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence ACTTGA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#8.bam | bam | 2569295250.0 | 17128635.0 | SC RUN 9217 8#8 | 0:75 1:75 | A:687367533;C:603633435;G:600271276;T:677164225;N:858781 | 75 | 75 | 687367533 | 603633435 | 600271276 | 677164225 | 858781 | ERX248163 | ERS195623 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94399 | 0.94343 | 0.13238 | 0.13278 | 0.69047 | 0.69303 | 0.50113 | 0.50267 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14966 | 14966 | ERR273886 | ERX248162 | ERS195622 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886543 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886543|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#7 | 6469776 | Illumina sequencing of library 6469776 constructed from sample accession ERS195622 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence CAGATC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#7.bam | bam | 2611623450.0 | 17410823.0 | SC RUN 9217 8#7 | 0:75 1:75 | A:719995222;C:591279714;G:590332226;T:709144896;N:871392 | 75 | 75 | 719995222 | 591279714 | 590332226 | 709144896 | 871392 | ERX248162 | ERS195622 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93603 | 0.93598 | 0.14074 | 0.14096 | 0.68132 | 0.68367 | 0.46283 | 0.46253 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14967 | 14967 | ERR273885 | ERX248161 | ERS195621 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886529 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886529|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#6 | 6469775 | Illumina sequencing of library 6469775 constructed from sample accession ERS195621 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GCCAAT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#6.bam | bam | 1711498350.0 | 11409989.0 | SC RUN 9217 8#6 | 0:75 1:75 | A:478468027;C:383208301;G:380592746;T:468656858;N:572418 | 75 | 75 | 478468027 | 383208301 | 380592746 | 468656858 | 572418 | ERX248161 | ERS195621 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93801 | 0.9372 | 0.13201 | 0.13198 | 0.70928 | 0.71019 | 0.4732 | 0.48193 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14968 | 14968 | ERR273884 | ERX248160 | ERS195620 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886534 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886534|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#5 | 6469774 | Illumina sequencing of library 6469774 constructed from sample accession ERS195620 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence ACAGTG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#5.bam | bam | 1726040100.0 | 11506934.0 | SC RUN 9217 8#5 | 0:75 1:75 | A:476901006;C:392070555;G:388254090;T:468238629;N:575820 | 75 | 75 | 476901006 | 392070555 | 388254090 | 468238629 | 575820 | ERX248160 | ERS195620 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93796 | 0.93884 | 0.13026 | 0.13143 | 0.71017 | 0.71159 | 0.49341 | 0.49507 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14969 | 14969 | ERR273883 | ERX248159 | ERS195619 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886542 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886542|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#4 | 6469773 | Illumina sequencing of library 6469773 constructed from sample accession ERS195619 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence TGACCA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#4.bam | bam | 1630193550.0 | 10867957.0 | SC RUN 9217 8#4 | 0:75 1:75 | A:455025884;C:365732040;G:362770545;T:446119976;N:545105 | 75 | 75 | 455025884 | 365732040 | 362770545 | 446119976 | 545105 | ERX248159 | ERS195619 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93155 | 0.93152 | 0.12815 | 0.1285 | 0.71131 | 0.71417 | 0.50568 | 0.50702 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14970 | 14970 | ERR273882 | ERX248158 | ERS195618 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886540 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886540|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#3 | 6469772 | Illumina sequencing of library 6469772 constructed from sample accession ERS195618 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence TTAGGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#3.bam | bam | 1569004050.0 | 10460027.0 | SC RUN 9217 8#3 | 0:75 1:75 | A:440555397;C:349524586;G:346773497;T:431628341;N:522229 | 75 | 75 | 440555397 | 349524586 | 346773497 | 431628341 | 522229 | ERX248158 | ERS195618 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93927 | 0.93772 | 0.12095 | 0.12156 | 0.70506 | 0.70743 | 0.49178 | 0.48905 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14971 | 14971 | ERR273881 | ERX248157 | ERS195617 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886527 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886527|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#2 | 6469771 | Illumina sequencing of library 6469771 constructed from sample accession ERS195617 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence CGATGT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#2.bam | bam | 1176089850.0 | 7840599.0 | SC RUN 9217 8#2 | 0:75 1:75 | A:333710821;C:259075896;G:256081487;T:326827024;N:394622 | 75 | 75 | 333710821 | 259075896 | 256081487 | 326827024 | 394622 | ERX248157 | ERS195617 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93557 | 0.9342 | 0.12911 | 0.12931 | 0.70733 | 0.70946 | 0.49301 | 0.49925 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14972 | 14972 | ERR273880 | ERX248156 | ERS195616 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886544 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886544|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 8#1 | 6469770 | Illumina sequencing of library 6469770 constructed from sample accession ERS195616 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence ATCACG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_8#1.bam | bam | 1120208550.0 | 7468057.0 | SC RUN 9217 8#1 | 0:75 1:75 | A:315141893;C:249205252;G:247224182;T:308258398;N:378825 | 75 | 75 | 315141893 | 249205252 | 247224182 | 308258398 | 378825 | ERX248156 | ERS195616 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93613 | 0.93545 | 0.1283 | 0.12917 | 0.70798 | 0.71027 | 0.48251 | 0.4882 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14973 | 14973 | ERR273879 | ERX248155 | ERS195633 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886535 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886535|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 9 4 sibling sc 2012 11 27T16:31:09Z 1518920|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 4 sibling sc 2012 11 27T16:31:09Z 1518920|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#18 | 6469787 | Illumina sequencing of library 6469787 constructed from sample accession ERS195633 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GTGAAA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#18.bam | bam | 1163037600.0 | 7753584.0 | SC RUN 9217 7#18 | 0:75 1:75 | A:314794645;C:269492352;G:267480756;T:310884900;N:384947 | 75 | 75 | 314794645 | 269492352 | 267480756 | 310884900 | 384947 | ERX248155 | ERS195633 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94491 | 0.94385 | 0.12981 | 0.12995 | 0.66162 | 0.66283 | 0.47977 | 0.47107 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14974 | 14974 | ERR273878 | ERX248154 | ERS195632 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886533 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886533|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 4 mutant sc 2012 11 27T16:31:09Z 1518919|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 4 mutant sc 2012 11 27T16:31:09Z 1518919|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#17 | 6469786 | Illumina sequencing of library 6469786 constructed from sample accession ERS195632 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GTCCGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#17.bam | bam | 1239931650.0 | 8266211.0 | SC RUN 9217 7#17 | 0:75 1:75 | A:332233005;C:291230533;G:287870655;T:328186922;N:410535 | 75 | 75 | 332233005 | 291230533 | 287870655 | 328186922 | 410535 | ERX248154 | ERS195632 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94763 | 0.94722 | 0.11865 | 0.11878 | 0.67255 | 0.67336 | 0.46183 | 0.47031 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14975 | 14975 | ERR273877 | ERX248153 | ERS195631 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886536 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886536|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 3 sibling sc 2012 11 27T16:31:07Z 1518918|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 3 sibling sc 2012 11 27T16:31:07Z 1518918|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#16 | 6469785 | Illumina sequencing of library 6469785 constructed from sample accession ERS195631 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence CCGTCC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#16.bam | bam | 1496823300.0 | 9978822.0 | SC RUN 9217 7#16 | 0:75 1:75 | A:402546639;C:349586963;G:345123324;T:399077228;N:489146 | 75 | 75 | 402546639 | 349586963 | 345123324 | 399077228 | 489146 | ERX248153 | ERS195631 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94648 | 0.94625 | 0.12723 | 0.1279 | 0.66176 | 0.66271 | 0.46758 | 0.46973 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14976 | 14976 | ERR273876 | ERX248152 | ERS195630 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886530 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886530|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 9 3 mutant sc 2012 11 27T16:31:07Z 1518917|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 3 mutant sc 2012 11 27T16:31:07Z 1518917|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#15 | 6469784 | Illumina sequencing of library 6469784 constructed from sample accession ERS195630 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence ATGTCA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#15.bam | bam | 1227410550.0 | 8182737.0 | SC RUN 9217 7#15 | 0:75 1:75 | A:331595429;C:285443699;G:280714265;T:329247459;N:409698 | 75 | 75 | 331595429 | 285443699 | 280714265 | 329247459 | 409698 | ERX248152 | ERS195630 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94864 | 0.94771 | 0.11475 | 0.11512 | 0.66204 | 0.66336 | 0.45445 | 0.44978 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14977 | 14977 | ERR273875 | ERX248151 | ERS195629 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886531 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886531|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 2 sibling sc 2012 11 27T16:31:06Z 1518916|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 2 sibling sc 2012 11 27T16:31:06Z 1518916|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#14 | 6469783 | Illumina sequencing of library 6469783 constructed from sample accession ERS195629 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence AGTTCC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#14.bam | bam | 1029380400.0 | 6862536.0 | SC RUN 9217 7#14 | 0:75 1:75 | A:279910405;C:237475243;G:234307194;T:277344821;N:342737 | 75 | 75 | 279910405 | 237475243 | 234307194 | 277344821 | 342737 | ERX248151 | ERS195629 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94447 | 0.94424 | 0.13233 | 0.13249 | 0.65794 | 0.65975 | 0.47436 | 0.46408 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14978 | 14978 | ERR273874 | ERX248150 | ERS195628 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886528 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886528|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 2 mutant sc 2012 11 27T16:31:04Z 1518915|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 2 mutant sc 2012 11 27T16:31:04Z 1518915|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#13 | 6469782 | Illumina sequencing of library 6469782 constructed from sample accession ERS195628 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence AGTCAA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#13.bam | bam | 1151758500.0 | 7678390.0 | SC RUN 9217 7#13 | 0:75 1:75 | A:308014979;C:270939238;G:266645300;T:305774804;N:384179 | 75 | 75 | 308014979 | 270939238 | 266645300 | 305774804 | 384179 | ERX248150 | ERS195628 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94813 | 0.94799 | 0.12427 | 0.12514 | 0.66655 | 0.66766 | 0.47289 | 0.47203 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14979 | 14979 | ERR273873 | ERX248149 | ERS195627 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886541 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886541|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#12 | 6469781 | Illumina sequencing of library 6469781 constructed from sample accession ERS195627 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence CTTGTA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#12.bam | bam | 2303214000.0 | 15354760.0 | SC RUN 9217 7#12 | 0:75 1:75 | A:631760548;C:526687829;G:518000584;T:625999378;N:765661 | 75 | 75 | 631760548 | 526687829 | 518000584 | 625999378 | 765661 | ERX248149 | ERS195627 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94136 | 0.94026 | 0.12751 | 0.12827 | 0.67758 | 0.67969 | 0.46751 | 0.46964 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14980 | 14980 | ERR273872 | ERX248148 | ERS195626 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886538 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886538|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#11 | 6469780 | Illumina sequencing of library 6469780 constructed from sample accession ERS195626 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GGCTAC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#11.bam | bam | 2191529250.0 | 14610195.0 | SC RUN 9217 7#11 | 0:75 1:75 | A:604404279;C:497500521;G:492517483;T:596386777;N:720190 | 75 | 75 | 604404279 | 497500521 | 492517483 | 596386777 | 720190 | ERX248148 | ERS195626 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93745 | 0.93601 | 0.14587 | 0.14608 | 0.67771 | 0.67996 | 0.46712 | 0.459 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14981 | 14981 | ERR273871 | ERX248147 | ERS195625 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886532 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886532|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#10 | 6469779 | Illumina sequencing of library 6469779 constructed from sample accession ERS195625 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence TAGCTT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#10.bam | bam | 1513703550.0 | 10091357.0 | SC RUN 9217 7#10 | 0:75 1:75 | A:410787377;C:350732170;G:345859465;T:405824283;N:500255 | 75 | 75 | 410787377 | 350732170 | 345859465 | 405824283 | 500255 | ERX248147 | ERS195625 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.9427 | 0.94284 | 0.13663 | 0.13836 | 0.68343 | 0.68586 | 0.47702 | 0.47094 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14982 | 14982 | ERR273870 | ERX248146 | ERS195624 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886539 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886539|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#9 | 6469778 | Illumina sequencing of library 6469778 constructed from sample accession ERS195624 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GATCAG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#9.bam | bam | 1600259850.0 | 10668399.0 | SC RUN 9217 7#9 | 0:75 1:75 | A:437913621;C:367325609;G:360019868;T:434465844;N:534908 | 75 | 75 | 437913621 | 367325609 | 360019868 | 434465844 | 534908 | ERX248146 | ERS195624 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93889 | 0.93805 | 0.13842 | 0.13935 | 0.67594 | 0.67758 | 0.45596 | 0.45934 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14983 | 14983 | ERR273869 | ERX248145 | ERS195623 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886537 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886537|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#8 | 6469777 | Illumina sequencing of library 6469777 constructed from sample accession ERS195623 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence ACTTGA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#8.bam | bam | 2562061800.0 | 17080412.0 | SC RUN 9217 7#8 | 0:75 1:75 | A:685640040;C:601716737;G:598722783;T:675132099;N:850141 | 75 | 75 | 685640040 | 601716737 | 598722783 | 675132099 | 850141 | ERX248145 | ERS195623 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.94423 | 0.94296 | 0.13223 | 0.13258 | 0.69071 | 0.69301 | 0.49301 | 0.49702 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14984 | 14984 | ERR273868 | ERX248144 | ERS195622 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886543 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886543|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#7 | 6469776 | Illumina sequencing of library 6469776 constructed from sample accession ERS195622 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence CAGATC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#7.bam | bam | 2604324000.0 | 17362160.0 | SC RUN 9217 7#7 | 0:75 1:75 | A:718114710;C:589440349;G:588811966;T:707085884;N:871091 | 75 | 75 | 718114710 | 589440349 | 588811966 | 707085884 | 871091 | ERX248144 | ERS195622 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93727 | 0.93671 | 0.14108 | 0.14176 | 0.68316 | 0.6854 | 0.46272 | 0.46476 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14985 | 14985 | ERR273867 | ERX248143 | ERS195621 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886529 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886529|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#6 | 6469775 | Illumina sequencing of library 6469775 constructed from sample accession ERS195621 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GCCAAT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#6.bam | bam | 1707672300.0 | 11384482.0 | SC RUN 9217 7#6 | 0:75 1:75 | A:477568761;C:382208136;G:379791650;T:467529637;N:574116 | 75 | 75 | 477568761 | 382208136 | 379791650 | 467529637 | 574116 | ERX248143 | ERS195621 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93758 | 0.93642 | 0.13144 | 0.13189 | 0.70901 | 0.71056 | 0.48244 | 0.47987 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14986 | 14986 | ERR273866 | ERX248142 | ERS195620 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886534 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886534|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#5 | 6469774 | Illumina sequencing of library 6469774 constructed from sample accession ERS195620 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence ACAGTG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#5.bam | bam | 1719163350.0 | 11461089.0 | SC RUN 9217 7#5 | ERX248142 | ERS195620 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.91889 | 0.9011 | 0.13666 | 0.13543 | 0.70926 | 0.71094 | 0.48021 | 0.47945 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | ||||||||||||||||||||||||||
| 14987 | 14987 | ERR273865 | ERX248141 | ERS195619 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886542 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886542|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#4 | 6469773 | Illumina sequencing of library 6469773 constructed from sample accession ERS195619 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence TGACCA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#4.bam | bam | 1626190500.0 | 10841270.0 | SC RUN 9217 7#4 | 0:75 1:75 | A:454015011;C:364710766;G:361940574;T:444981305;N:542844 | 75 | 75 | 454015011 | 364710766 | 361940574 | 444981305 | 542844 | ERX248141 | ERS195619 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93154 | 0.93081 | 0.12773 | 0.12841 | 0.70983 | 0.71106 | 0.49848 | 0.50577 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14988 | 14988 | ERR273864 | ERX248140 | ERS195618 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886540 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886540|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#3 | 6469772 | Illumina sequencing of library 6469772 constructed from sample accession ERS195618 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence TTAGGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#3.bam | bam | 1566205500.0 | 10441370.0 | SC RUN 9217 7#3 | 0:75 1:75 | A:439799487;C:348771359;G:346303759;T:430816021;N:514874 | 75 | 75 | 439799487 | 348771359 | 346303759 | 430816021 | 514874 | ERX248140 | ERS195618 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93666 | 0.93764 | 0.12131 | 0.12227 | 0.70638 | 0.70946 | 0.48533 | 0.48632 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14989 | 14989 | ERR273863 | ERX248139 | ERS195617 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886527 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886527|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#2 | 6469771 | Illumina sequencing of library 6469771 constructed from sample accession ERS195617 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence CGATGT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#2.bam | bam | 1172040000.0 | 7813600.0 | SC RUN 9217 7#2 | 0:75 1:75 | A:332593503;C:258091884;G:255303483;T:325658114;N:393016 | 75 | 75 | 332593503 | 258091884 | 255303483 | 325658114 | 393016 | ERX248139 | ERS195617 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.93554 | 0.93518 | 0.12803 | 0.12845 | 0.70952 | 0.71167 | 0.49395 | 0.49534 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14990 | 14990 | ERR273862 | ERX248138 | ERS195616 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886544 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886544|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9217 7#1 | 6469770 | Illumina sequencing of library 6469770 constructed from sample accession ERS195616 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence ATCACG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 9217_7#1.bam | bam | 1116555150.0 | 7443701.0 | SC RUN 9217 7#1 | ERX248138 | ERS195616 | ERA212581 | SC | Wellcome Sanger Institute | 2 | 0.91973 | 0.90261 | 0.13664 | 0.13478 | 0.70703 | 0.7079 | 0.47179 | 0.47238 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | ||||||||||||||||||||||||||
| 14991 | 14991 | ERR271396 | ERX245623 | ERS195633 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886535 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886535|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 9 4 sibling sc 2012 11 27T16:31:09Z 1518920|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 4 sibling sc 2012 11 27T16:31:09Z 1518920|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#18 | 6469787 | Illumina sequencing of library 6469787 constructed from sample accession ERS195633 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GTGAAA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#18.bam | bam | 948286650.0 | 6321911.0 | SC RUN 9201 6#18 | 0:75 1:75 | A:256299519;C:219833865;G:218159608;T:253519072;N:474586 | 75 | 75 | 256299519 | 219833865 | 218159608 | 253519072 | 474586 | ERX245623 | ERS195633 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94448 | 0.94409 | 0.12906 | 0.12947 | 0.66196 | 0.66405 | 0.47903 | 0.47323 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14992 | 14992 | ERR271395 | ERX245622 | ERS195632 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886533 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886533|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 4 mutant sc 2012 11 27T16:31:09Z 1518919|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 4 mutant sc 2012 11 27T16:31:09Z 1518919|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#17 | 6469786 | Illumina sequencing of library 6469786 constructed from sample accession ERS195632 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GTCCGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#17.bam | bam | 1016394900.0 | 6775966.0 | SC RUN 9201 6#17 | 0:75 1:75 | A:271911318;C:238864292;G:236088536;T:269028989;N:501765 | 75 | 75 | 271911318 | 238864292 | 236088536 | 269028989 | 501765 | ERX245622 | ERS195632 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94833 | 0.94681 | 0.11589 | 0.11705 | 0.67034 | 0.67186 | 0.46997 | 0.47084 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14993 | 14993 | ERR271394 | ERX245621 | ERS195631 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886536 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886536|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 3 sibling sc 2012 11 27T16:31:07Z 1518918|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 3 sibling sc 2012 11 27T16:31:07Z 1518918|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#16 | 6469785 | Illumina sequencing of library 6469785 constructed from sample accession ERS195631 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence CCGTCC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#16.bam | bam | 1227719550.0 | 8184797.0 | SC RUN 9201 6#16 | 0:75 1:75 | A:329634509;C:286904364;G:283207153;T:327355006;N:618518 | 75 | 75 | 329634509 | 286904364 | 283207153 | 327355006 | 618518 | ERX245621 | ERS195631 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94703 | 0.94531 | 0.1265 | 0.12649 | 0.65914 | 0.66076 | 0.47656 | 0.46596 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14994 | 14994 | ERR271393 | ERX245620 | ERS195630 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886530 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886530|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 9 3 mutant sc 2012 11 27T16:31:07Z 1518917|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 3 mutant sc 2012 11 27T16:31:07Z 1518917|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#15 | 6469784 | Illumina sequencing of library 6469784 constructed from sample accession ERS195630 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence ATGTCA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#15.bam | bam | 1004372100.0 | 6695814.0 | SC RUN 9201 6#15 | 0:75 1:75 | A:270936242;C:233679618;G:229831824;T:269420183;N:504233 | 75 | 75 | 270936242 | 233679618 | 229831824 | 269420183 | 504233 | ERX245620 | ERS195630 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94826 | 0.94665 | 0.11601 | 0.11574 | 0.66117 | 0.66289 | 0.4502 | 0.45852 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14995 | 14995 | ERR271392 | ERX245619 | ERS195629 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886531 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886531|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 2 sibling sc 2012 11 27T16:31:06Z 1518916|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 2 sibling sc 2012 11 27T16:31:06Z 1518916|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#14 | 6469783 | Illumina sequencing of library 6469783 constructed from sample accession ERS195629 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence AGTTCC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#14.bam | bam | 842419950.0 | 5616133.0 | SC RUN 9201 6#14 | 0:75 1:75 | A:228726503;C:194443805;G:191822242;T:227010145;N:417255 | 75 | 75 | 228726503 | 194443805 | 191822242 | 227010145 | 417255 | ERX245619 | ERS195629 | ERA211703 | SC | Wellcome Sanger Institute | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | ||||||||||||||||||||||||||||
| 14996 | 14996 | ERR271391 | ERX245618 | ERS195628 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886528 | SC | ArrayExpress DevelopmentalStage:Larval : Day 4 ZFS:0000036|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886528|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 9 2 mutant sc 2012 11 27T16:31:04Z 1518915|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph9|sample name:ZMP phenotype 9 2 mutant sc 2012 11 27T16:31:04Z 1518915|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#13 | 6469782 | Illumina sequencing of library 6469782 constructed from sample accession ERS195628 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence AGTCAA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#13.bam | bam | 938234550.0 | 6254897.0 | SC RUN 9201 6#13 | 0:75 1:75 | A:250506121;C:220836221;G:217300911;T:249123797;N:467500 | 75 | 75 | 250506121 | 220836221 | 217300911 | 249123797 | 467500 | ERX245618 | ERS195628 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94957 | 0.94773 | 0.12333 | 0.12378 | 0.66697 | 0.66943 | 0.47561 | 0.47505 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Larval | Larval | Whole Organism | All anatomical structures | |||||||||||||||||
| 14997 | 14997 | ERR271390 | ERX245617 | ERS195627 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886541 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886541|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#12 | 6469781 | Illumina sequencing of library 6469781 constructed from sample accession ERS195627 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence CTTGTA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#12.bam | bam | 1878846900.0 | 12525646.0 | SC RUN 9201 6#12 | 0:75 1:75 | A:514561892;C:429839016;G:422805267;T:510698286;N:942439 | 75 | 75 | 514561892 | 429839016 | 422805267 | 510698286 | 942439 | ERX245617 | ERS195627 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94133 | 0.94 | 0.12875 | 0.12884 | 0.67795 | 0.67971 | 0.46257 | 0.45975 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14998 | 14998 | ERR271389 | ERX245616 | ERS195626 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886538 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886538|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#11 | 6469780 | Illumina sequencing of library 6469780 constructed from sample accession ERS195626 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GGCTAC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#11.bam | bam | 1791468750.0 | 11943125.0 | SC RUN 9201 6#11 | 0:75 1:75 | A:493236493;C:407035217;G:402855646;T:487439825;N:901569 | 75 | 75 | 493236493 | 407035217 | 402855646 | 487439825 | 901569 | ERX245616 | ERS195626 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93754 | 0.9356 | 0.14614 | 0.14647 | 0.67724 | 0.67856 | 0.45561 | 0.44999 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 14999 | 14999 | ERR271388 | ERX245615 | ERS195625 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886532 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886532|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#10 | 6469779 | Illumina sequencing of library 6469779 constructed from sample accession ERS195625 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence TAGCTT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#10.bam | bam | 1233052650.0 | 8220351.0 | SC RUN 9201 6#10 | 0:75 1:75 | A:334146519;C:285833801;G:281824558;T:330623398;N:624374 | 75 | 75 | 334146519 | 285833801 | 281824558 | 330623398 | 624374 | ERX245615 | ERS195625 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94305 | 0.94176 | 0.13533 | 0.13577 | 0.68292 | 0.68286 | 0.476 | 0.47409 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15000 | 15000 | ERR271387 | ERX245614 | ERS195624 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886539 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886539|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#9 | 6469778 | Illumina sequencing of library 6469778 constructed from sample accession ERS195624 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GATCAG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#9.bam | bam | 1307158050.0 | 8714387.0 | SC RUN 9201 6#9 | 0:75 1:75 | A:357170484;C:300163456;G:294213417;T:354956106;N:654587 | 75 | 75 | 357170484 | 300163456 | 294213417 | 354956106 | 654587 | ERX245614 | ERS195624 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93911 | 0.93751 | 0.13707 | 0.13723 | 0.67379 | 0.67564 | 0.46345 | 0.46034 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15001 | 15001 | ERR271386 | ERX245613 | ERS195623 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886537 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886537|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#8 | 6469777 | Illumina sequencing of library 6469777 constructed from sample accession ERS195623 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence ACTTGA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#8.bam | bam | 2093759100.0 | 13958394.0 | SC RUN 9201 6#8 | 0:75 1:75 | A:559506384;C:491929011;G:489425570;T:551850915;N:1047220 | 75 | 75 | 559506384 | 491929011 | 489425570 | 551850915 | 1047220 | ERX245613 | ERS195623 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.94432 | 0.94329 | 0.13058 | 0.13185 | 0.69041 | 0.69114 | 0.49144 | 0.5038 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15002 | 15002 | ERR271385 | ERX245612 | ERS195622 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886543 | SC | ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886543|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8|sample name:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#7 | 6469776 | Illumina sequencing of library 6469776 constructed from sample accession ERS195622 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence CAGATC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#7.bam | bam | 2119712550.0 | 14131417.0 | SC RUN 9201 6#7 | 0:75 1:75 | A:583700274;C:479941691;G:479373820;T:575634850;N:1061915 | 75 | 75 | 583700274 | 479941691 | 479373820 | 575634850 | 1061915 | ERX245612 | ERS195622 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93815 | 0.93675 | 0.14169 | 0.14181 | 0.68028 | 0.68215 | 0.46227 | 0.46055 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Hatching | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15003 | 15003 | ERR271384 | ERX245611 | ERS195621 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886529 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886529|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 sibling sc 2012 11 27T16:30:56Z 1518908|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#6 | 6469775 | Illumina sequencing of library 6469775 constructed from sample accession ERS195621 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GCCAAT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#6.bam | bam | 1393473450.0 | 9289823.0 | SC RUN 9201 6#6 | 0:75 1:75 | A:389084610;C:312060787;G:310077460;T:381555841;N:694752 | 75 | 75 | 389084610 | 312060787 | 310077460 | 381555841 | 694752 | ERX245611 | ERS195621 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93911 | 0.93746 | 0.1301 | 0.13135 | 0.70686 | 0.70889 | 0.49764 | 0.48868 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15004 | 15004 | ERR271383 | ERX245610 | ERS195620 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886534 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886534|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 6 mutant sc 2012 11 27T16:30:55Z 1518907|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#5 | 6469774 | Illumina sequencing of library 6469774 constructed from sample accession ERS195620 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence ACAGTG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#5.bam | bam | 1399680750.0 | 9331205.0 | SC RUN 9201 6#5 | 0:75 1:75 | A:386303716;C:317856811;G:314946436;T:379877498;N:696289 | 75 | 75 | 386303716 | 317856811 | 314946436 | 379877498 | 696289 | ERX245610 | ERS195620 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93867 | 0.93773 | 0.1299 | 0.13054 | 0.70656 | 0.70903 | 0.49515 | 0.49482 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15005 | 15005 | ERR271382 | ERX245609 | ERS195619 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886542 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886542|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 sibling sc 2012 11 27T16:30:54Z 1518906|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#4 | 6469773 | Illumina sequencing of library 6469773 constructed from sample accession ERS195619 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence TGACCA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#4.bam | bam | 1326165450.0 | 8841103.0 | SC RUN 9201 6#4 | 0:75 1:75 | A:369763686;C:297520280;G:295209473;T:362998667;N:673344 | 75 | 75 | 369763686 | 297520280 | 295209473 | 362998667 | 673344 | ERX245609 | ERS195619 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.9308 | 0.92975 | 0.12931 | 0.129 | 0.71153 | 0.71234 | 0.50884 | 0.50645 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15006 | 15006 | ERR271381 | ERX245608 | ERS195618 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886540 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:35Z|External Id:SAMEA1886540|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:35Z|INSDC status:public|Submitter Id:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 3 mutant sc 2012 11 27T16:30:53Z 1518905|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#3 | 6469772 | Illumina sequencing of library 6469772 constructed from sample accession ERS195618 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence TTAGGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#3.bam | bam | 1277555850.0 | 8517039.0 | SC RUN 9201 6#3 | 0:75 1:75 | A:358197532;C:284724634;G:282531631;T:351464208;N:637845 | 75 | 75 | 358197532 | 284724634 | 282531631 | 351464208 | 637845 | ERX245608 | ERS195618 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93733 | 0.93753 | 0.12231 | 0.12246 | 0.70615 | 0.70853 | 0.48197 | 0.48793 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15007 | 15007 | ERR271380 | ERX245607 | ERS195617 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886527 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886527|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|common name:zebrafish|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 sibling sc 2012 11 27T16:30:52Z 1518904|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#2 | 6469771 | Illumina sequencing of library 6469771 constructed from sample accession ERS195617 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence CGATGT. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#2.bam | bam | 954172500.0 | 6361150.0 | SC RUN 9201 6#2 | 0:75 1:75 | A:270328287;C:210265769;G:207981282;T:265112454;N:484708 | 75 | 75 | 270328287 | 210265769 | 207981282 | 265112454 | 484708 | ERX245607 | ERS195617 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93444 | 0.9332 | 0.12772 | 0.12818 | 0.71003 | 0.71256 | 0.49687 | 0.49245 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures | |||||||||||||||||
| 15008 | 15008 | ERR271379 | ERX245606 | ERS195616 | ERP001991 | PRJEB673 | RNAseq vs DeTCT comparison | RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling | SAMEA1886544 | SC | ArrayExpress DevelopmentalStage:Pharyngula : Primordial 15 ZFS:0000030|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 07T10:06:35Z|ENA LAST UPDATE:2018 03 08T16:09:24Z|External Id:SAMEA1886544|INSDC center name:SC|INSDC first public:2013 05 07T10:06:35Z|INSDC last update:2018 03 08T16:09:24Z|INSDC status:public|Submitter Id:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|common name:zebrafish|sample description:Morphologically abnormal zebrafish embryos from zmp ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph7|sample name:ZMP phenotype 7 1 mutant sc 2012 11 27T16:30:51Z 1518903|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9201 6#1 | 6469770 | Illumina sequencing of library 6469770 constructed from sample accession ERS195616 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence ATCACG. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001991 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 07|ENA LAST UPDATE:2018 11 16 | 9201_6#1.bam | bam | 909604350.0 | 6064029.0 | SC RUN 9201 6#1 | 0:75 1:75 | A:255571342;C:202374058;G:200901121;T:250308092;N:449737 | 75 | 75 | 255571342 | 202374058 | 200901121 | 250308092 | 449737 | ERX245606 | ERS195616 | ERA211703 | SC | Wellcome Sanger Institute | 2 | 0.93644 | 0.93511 | 0.12754 | 0.12713 | 0.70494 | 0.70765 | 0.48261 | 0.4791 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | detct | United Kingdom | 2013-05-07 | Pharyngula | Embryo | Whole Organism | All anatomical structures |
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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;