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402 rows where experiment.library_strategy = "RNA-Seq", experiment.platform = "DNBSEQ" and tissue_curation = "Heart"

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technology 2

devstage_curation_coarse 2

devstage_curation 2

tissue_curation_coarse 1

tissue_curation 1

  • Heart · 402 ✖

experiment.platform 1

  • DNBSEQ · 402 ✖

experiment.library_strategy 1

  • RNA-Seq · 402 ✖

experiment.library_source 1

experiment.library_selection 1

experiment.library_layout 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
33934 33934 SRR30947094 SRX26349630 SRS22874784 SRP537826 PRJNA1171482 TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development GSE279246 Transcriptome Analysis Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7 along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS respectively rare multisystem syndromes where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD sCHD 2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD but not in nsCHD. Detailed characterization of tak1 / and tab2 / zebrafish mutants revealed cardiac defects dilated atrium trabeculation defects tachycardia and reduced contractility as well as extracardiac developmental anomalies. RNA sequencing of tak1 / mutant hearts showed downregulation of genes encoding core cardiac transcription factors sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules including ligands of the TGFB/BMP superfamily. Consistent with these findings CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion our data establishes a central role for TAK1…       whole heart tak1+/+ wild type replicate #3 GSM8565205   source name:Whole heart 3 dpf|tissue:Whole heart 3 dpf|genotype:tak1+/+|geo loc name:missing|collection date:missing whole heart tak1+/+ wild type replicate #3 post quality filtering reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50% average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM. Whole heart 3 dpf   RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   tissue:Whole heart 3 dpf|genotype:tak1+/+ GSM8565205 GSM8565205: whole heart tak1+/+ wild type replicate #3; Danio rerio; RNA Seq GSM8565205 r1 GSM8565205 1 RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   SRP537826     WT_3_1.fq.gz WT_3_2.fq.gz fastq fastq 4449566200.0 22247831.0 GSM8565205 r1 0:100 1:100 A:1179341017;C:1046638560;G:1046356098;T:1177230525;N:0 100 100     1179341017 1046638560 1046356098 1177230525 0 SRX26349630 SRS22874784 SRA1990217 Department of Cellular and Molecular Medicine, University of Copenhagen Department of Cellular and Molecular Medicine, University of Copenhagen                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk bulk bulk   Denmark 2024-10-10 Larval Larval Heart Cardiovascular System
33935 33935 SRR30947095 SRX26349629 SRS22874783 SRP537826 PRJNA1171482 TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development GSE279246 Transcriptome Analysis Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7 along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS respectively rare multisystem syndromes where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD sCHD 2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD but not in nsCHD. Detailed characterization of tak1 / and tab2 / zebrafish mutants revealed cardiac defects dilated atrium trabeculation defects tachycardia and reduced contractility as well as extracardiac developmental anomalies. RNA sequencing of tak1 / mutant hearts showed downregulation of genes encoding core cardiac transcription factors sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules including ligands of the TGFB/BMP superfamily. Consistent with these findings CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion our data establishes a central role for TAK1…       whole heart tak1+/+ wild type replicate #2 GSM8565204   source name:Whole heart 3 dpf|tissue:Whole heart 3 dpf|genotype:tak1+/+|geo loc name:missing|collection date:missing whole heart tak1+/+ wild type replicate #2 post quality filtering reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50% average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM. Whole heart 3 dpf   RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   tissue:Whole heart 3 dpf|genotype:tak1+/+ GSM8565204 GSM8565204: whole heart tak1+/+ wild type replicate #2; Danio rerio; RNA Seq GSM8565204 r1 GSM8565204 1 RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   SRP537826     WT_2_1.fq.gz WT_2_2.fq.gz fastq fastq 4519627600.0 22598138.0 GSM8565204 r1 0:100 1:100 A:1207344552;C:1055139553;G:1056806709;T:1200336786;N:0 100 100     1207344552 1055139553 1056806709 1200336786 0 SRX26349629 SRS22874783 SRA1990217 Department of Cellular and Molecular Medicine, University of Copenhagen Department of Cellular and Molecular Medicine, University of Copenhagen                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk bulk bulk   Denmark 2024-10-10 Larval Larval Heart Cardiovascular System
33936 33936 SRR30947096 SRX26349628 SRS22874781 SRP537826 PRJNA1171482 TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development GSE279246 Transcriptome Analysis Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7 along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS respectively rare multisystem syndromes where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD sCHD 2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD but not in nsCHD. Detailed characterization of tak1 / and tab2 / zebrafish mutants revealed cardiac defects dilated atrium trabeculation defects tachycardia and reduced contractility as well as extracardiac developmental anomalies. RNA sequencing of tak1 / mutant hearts showed downregulation of genes encoding core cardiac transcription factors sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules including ligands of the TGFB/BMP superfamily. Consistent with these findings CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion our data establishes a central role for TAK1…       whole heart tak1+/+ wild type replicate #1 GSM8565203   source name:Whole heart 3 dpf|tissue:Whole heart 3 dpf|genotype:tak1+/+|geo loc name:missing|collection date:missing whole heart tak1+/+ wild type replicate #1 post quality filtering reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50% average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM. Whole heart 3 dpf   RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   tissue:Whole heart 3 dpf|genotype:tak1+/+ GSM8565203 GSM8565203: whole heart tak1+/+ wild type replicate #1; Danio rerio; RNA Seq GSM8565203 r1 GSM8565203 1 RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   SRP537826     WT_1_1.fq.gz WT_1_2.fq.gz fastq fastq 4496601200.0 22483006.0 GSM8565203 r1 0:100 1:100 A:1201390946;C:1050348674;G:1051355386;T:1193506194;N:0 100 100     1201390946 1050348674 1051355386 1193506194 0 SRX26349628 SRS22874781 SRA1990217 Department of Cellular and Molecular Medicine, University of Copenhagen Department of Cellular and Molecular Medicine, University of Copenhagen                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk bulk bulk   Denmark 2024-10-10 Larval Larval Heart Cardiovascular System
33937 33937 SRR30947097 SRX26349627 SRS22874780 SRP537826 PRJNA1171482 TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development GSE279246 Transcriptome Analysis Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7 along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS respectively rare multisystem syndromes where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD sCHD 2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD but not in nsCHD. Detailed characterization of tak1 / and tab2 / zebrafish mutants revealed cardiac defects dilated atrium trabeculation defects tachycardia and reduced contractility as well as extracardiac developmental anomalies. RNA sequencing of tak1 / mutant hearts showed downregulation of genes encoding core cardiac transcription factors sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules including ligands of the TGFB/BMP superfamily. Consistent with these findings CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion our data establishes a central role for TAK1…       whole heart tak1 / mutant replicate #3 GSM8565202   source name:Whole heart 3 dpf|tissue:Whole heart 3 dpf|genotype:tak1 / |geo loc name:missing|collection date:missing whole heart tak1 / mutant replicate #3 post quality filtering reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50% average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM. Whole heart 3 dpf   RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   tissue:Whole heart 3 dpf|genotype:tak1 / GSM8565202 GSM8565202: whole heart tak1 / mutant replicate #3; Danio rerio; RNA Seq GSM8565202 r1 GSM8565202 1 RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   SRP537826     mut_3_1.fq.gz mut_3_2.fq.gz fastq fastq 4451759600.0 22258798.0 GSM8565202 r1 0:100 1:100 A:1167798041;C:1064608876;G:1066460994;T:1152891689;N:0 100 100     1167798041 1064608876 1066460994 1152891689 0 SRX26349627 SRS22874780 SRA1990217 Department of Cellular and Molecular Medicine, University of Copenhagen Department of Cellular and Molecular Medicine, University of Copenhagen                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk bulk bulk   Denmark 2024-10-10 Larval Larval Heart Cardiovascular System
33938 33938 SRR30947098 SRX26349626 SRS22874782 SRP537826 PRJNA1171482 TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development GSE279246 Transcriptome Analysis Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7 along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS respectively rare multisystem syndromes where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD sCHD 2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD but not in nsCHD. Detailed characterization of tak1 / and tab2 / zebrafish mutants revealed cardiac defects dilated atrium trabeculation defects tachycardia and reduced contractility as well as extracardiac developmental anomalies. RNA sequencing of tak1 / mutant hearts showed downregulation of genes encoding core cardiac transcription factors sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules including ligands of the TGFB/BMP superfamily. Consistent with these findings CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion our data establishes a central role for TAK1…       whole heart tak1 / mutant replicate #2 GSM8565201   source name:Whole heart 3 dpf|tissue:Whole heart 3 dpf|genotype:tak1 / |geo loc name:missing|collection date:missing whole heart tak1 / mutant replicate #2 post quality filtering reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50% average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM. Whole heart 3 dpf   RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   tissue:Whole heart 3 dpf|genotype:tak1 / GSM8565201 GSM8565201: whole heart tak1 / mutant replicate #2; Danio rerio; RNA Seq GSM8565201 r1 GSM8565201 1 RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   SRP537826     mut_2_1.fq.gz mut_2_2.fq.gz fastq fastq 4534495200.0 22672476.0 GSM8565201 r1                       SRX26349626 SRS22874782 SRA1990217 Department of Cellular and Molecular Medicine, University of Copenhagen Department of Cellular and Molecular Medicine, University of Copenhagen                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk bulk bulk   Denmark 2024-10-10 Larval Larval Heart Cardiovascular System
33939 33939 SRR30947099 SRX26349625 SRS22874779 SRP537826 PRJNA1171482 TAK1 operates at the primary cilium in non canonical TGFB/BMP signaling to control heart development GSE279246 Transcriptome Analysis Transforming Growth Factor Beta Activated Kinase 1 TAK1/MAP3K7 along with its upstream regulators TAK1 Binding Protein 2 TAB2 and the catalytic alpha subunit of Protein Kinase A PKA Ca/PRKACA has been identified as a pivotal player in regulation of developmental processes. Haploinsufficiency of TAB2 causes Congenital Heart Disease CHD and rare variants in PKA Ca and TAK1 cause cardioacrofacial dysplasia CAFD and Frontometaphyseal Dysplasia FMD and cardiospondylocarpofacial syndrome CSCFS respectively rare multisystem syndromes where CHD may appear in the clinical spectrum. We hypothesized that TAK1 plays a significant role in heart development and CHD and addressed this by genetic analysis in CHD patient cohorts and experiments in cell and animal models. Exome sequencing data from 1 471 CHD patients with extracardiac anomalies syndromic CHD sCHD 2 405 patients with nonsyndromic CHD nsCHD and 45 082 controls showed increased burden of rare TAB2 and TAK1 variants in sCHD but not in nsCHD. Detailed characterization of tak1 / and tab2 / zebrafish mutants revealed cardiac defects dilated atrium trabeculation defects tachycardia and reduced contractility as well as extracardiac developmental anomalies. RNA sequencing of tak1 / mutant hearts showed downregulation of genes encoding core cardiac transcription factors sarcomeric proteins and extracellular matrix proteins. Experiments with cell cultures and analysis of zebrafish larvae and gastruloids indicated that TAK1 via TAB2 and PKA Ca is activated at the primary cilium during cardiomyogenesis and that TAK1 activation at this site is enhanced by cardiomyogenic signaling molecules including ligands of the TGFB/BMP superfamily. Consistent with these findings CRISPR/Cas9 mediated editing of TAK1 or administration of small molecule inhibitors targeting TAK1 inhibited ciliary signaling and cardiomyocyte differentiation in vitro while FMD causing mutations in TAK1 reduced its ciliary localization. In conclusion our data establishes a central role for TAK1…       whole heart tak1 / mutant replicate #1 GSM8565200   source name:Whole heart 3 dpf|tissue:Whole heart 3 dpf|genotype:tak1 / |geo loc name:missing|collection date:missing whole heart tak1 / mutant replicate #1 post quality filtering reads were aligned to reference sequence GCF 000002035.6 GRCz11 using HISAT and Bowtie 2. Average mapping ratio with reference genome was 88.50% average mapping ratio with genes was 74.56%. In total 23966 genes were identified. Assembly: GCF 000002035.6 GRCz11 Supplementary files format and content: Matrix txt file. Columns: gene id NCBI; gene symbol; tpm mut 1; tpm mut 2; tpm mut 3; tpm WT 1; tpm WT 2; tpm WT 3. Data is shown as transcripts per million TPM. Whole heart 3 dpf   RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   tissue:Whole heart 3 dpf|genotype:tak1 / GSM8565200 GSM8565200: whole heart tak1 / mutant replicate #1; Danio rerio; RNA Seq GSM8565200 r1 GSM8565200 1 RNA isolation using Qiagen Rneasy micro kit Bulk RNAseq was performed as a service by BGI China. Samples were paired end sequenced using the DNBSEQ platform.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   SRP537826     mut_1_1.fq.gz mut_1_2.fq.gz fastq fastq 4425052600.0 22125263.0 GSM8565200 r1 0:100 1:100 A:1161989932;C:1055452567;G:1055912540;T:1151697561;N:0 100 100     1161989932 1055452567 1055912540 1151697561 0 SRX26349625 SRS22874779 SRA1990217 Department of Cellular and Molecular Medicine, University of Copenhagen Department of Cellular and Molecular Medicine, University of Copenhagen                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk bulk bulk   Denmark 2024-10-10 Larval Larval Heart Cardiovascular System
34987 34987 SRR32942209 SRX28216558 SRS24541720 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial uninjured heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023364BR L01 read.T1 C1.part 004 DP8400023364BR L01 read.T1 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023364BR_L01_read.part_004_1.fq.gz DP8400023364BR_L01_read.part_004_2.fq.gz fastq fastq 123077427480.0 911684648.0 DP8400023364BR L01 read.part 004 1.fq.gz                       SRX28216558 SRS24541720 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34988 34988 SRR32942163 SRX28216557 SRS24541723 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 14 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023362BR L01 read.T7 C2.part 004 DP8400023362BR L01 read.T7 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023362BR_L01_read.part_004_1.fq.gz DP8400023362BR_L01_read.part_004_2.fq.gz fastq fastq 107293454415.0 794766329.0 DP8400023362BR L01 read.part 004 1.fq.gz 0:35 1:100 A:31376398573;C:25690917149;G:24154317375;T:26069613878;N:2207440 35 100     31376398573 25690917149 24154317375 26069613878 2207440 SRX28216557 SRS24541723 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34989 34989 SRR32942164 SRX28216556 SRS24541723 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 14 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023361BR L01 read.T7 C1.part 004 DP8400023361BR L01 read.T7 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023361BR_L01_read.part_004_1.fq.gz DP8400023361BR_L01_read.part_004_2.fq.gz fastq fastq 73541011590.0 544748234.0 DP8400023361BR L01 read.part 004 1.fq.gz 0:35 1:100 A:21245841948;C:17695592198;G:16579296946;T:18018318788;N:1961710 35 100     21245841948 17695592198 16579296946 18018318788 1961710 SRX28216556 SRS24541723 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34990 34990 SRR32942165 SRX28216555 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018806BL L01 read.DP8400016191TL D2.part 004 DP8400018806BL L01 read.DP8400016191TL D2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018806BL_L01_read.part_004_1.fq.gz DP8400018806BL_L01_read.part_004_2.fq.gz fastq fastq 55082417580.0 408017908.0 DP8400018806BL L01 read.part 004 1.fq.gz 0:35 1:100 A:13778227671;C:14713292408;G:13807456331;T:12779522494;N:3918676 35 100     13778227671 14713292408 13807456331 12779522494 3918676 SRX28216555 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34991 34991 SRR32942166 SRX28216554 SRS24541719 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 28 dpa heart   strain:not applicable|dev stage:28 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 28 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022484TL L01 read.T8 C3.part 004 DP8400022484TL L01 read.T8 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022484TL_L01_read.part_004_1.fq.gz DP8400022484TL_L01_read.part_004_2.fq.gz fastq fastq 132532472295.0 981722017.0 DP8400022484TL L01 read.part 004 1.fq.gz                       SRX28216554 SRS24541719 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34992 34992 SRR32942167 SRX28216553 SRS24541721 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3 dpa heart   strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022389BL L01 read.T5 C2.part 004 DP8400022389BL L01 read.T5 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022389BL_L01_read.part_004_1.fq.gz DP8400022389BL_L01_read.part_004_2.fq.gz fastq fastq 104447005335.0 773681521.0 DP8400022389BL L01 read.part 004 1.fq.gz 0:35 1:100 A:27343177960;C:27134625733;G:25518535252;T:24448625683;N:2040707 35 100     27343177960 27134625733 25518535252 24448625683 2040707 SRX28216553 SRS24541721 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34993 34993 SRR32942168 SRX28216552 SRS24541722 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 6 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022386BL L01 read.T2 C1.part 004 DP8400022386BL L01 read.T2 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022386BL_L01_read.part_004_1.fq.gz DP8400022386BL_L01_read.part_004_2.fq.gz fastq fastq 133549992405.0 989259203.0 DP8400022386BL L01 read.part 004 1.fq.gz                       SRX28216552 SRS24541722 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34994 34994 SRR32942169 SRX28216551 SRS24541717 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 1 dpa heart   strain:not applicable|dev stage:1 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 1 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022382TR L01 read.T4 C1.part 004 DP8400022382TR L01 read.T4 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022382TR_L01_read.part_004_1.fq.gz DP8400022382TR_L01_read.part_004_2.fq.gz fastq fastq 117481461480.0 870233048.0 DP8400022382TR L01 read.part 004 1.fq.gz                       SRX28216551 SRS24541717 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34995 34995 SRR32942170 SRX28216550 SRS24541717 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 1 dpa heart   strain:not applicable|dev stage:1 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 1 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022381TR L01 read.T4 C2.part 004 DP8400022381TR L01 read.T4 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022381TR_L01_read.part_004_1.fq.gz DP8400022381TR_L01_read.part_004_2.fq.gz fastq fastq 115488770760.0 855472376.0 DP8400022381TR L01 read.part 004 1.fq.gz                       SRX28216550 SRS24541717 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34996 34996 SRR32942171 SRX28216549 SRS24541722 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 6 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022380TR L01 read.T2 C2.part 004 DP8400022380TR L01 read.T2 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022380TR_L01_read.part_004_1.fq.gz DP8400022380TR_L01_read.part_004_2.fq.gz fastq fastq 113741885745.0 842532487.0 DP8400022380TR L01 read.part 004 1.fq.gz                       SRX28216549 SRS24541722 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34997 34997 SRR32942172 SRX28216548 SRS24541722 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 6 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022379TR L01 read.T2 C3.part 004 DP8400022379TR L01 read.T2 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022379TR_L01_read.part_004_1.fq.gz DP8400022379TR_L01_read.part_004_2.fq.gz fastq fastq 122405973930.0 906710918.0 DP8400022379TR L01 read.part 004 1.fq.gz                       SRX28216548 SRS24541722 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34998 34998 SRR32942173 SRX28216547 SRS24541721 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3 dpa heart   strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022378TR L01 read.T5 C1.part 004 DP8400022378TR L01 read.T5 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022378TR_L01_read.part_004_1.fq.gz DP8400022378TR_L01_read.part_004_2.fq.gz fastq fastq 111214895535.0 823814041.0 DP8400022378TR L01 read.part 004 1.fq.gz                       SRX28216547 SRS24541721 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
34999 34999 SRR32942174 SRX28216546 SRS24541718 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 7 dpa heart   strain:not applicable|dev stage:7 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 7 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022137TL L01 read.T6 C2.part 004 DP8400022137TL L01 read.T6 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022137TL_L01_read.part_004_1.fq.gz DP8400022137TL_L01_read.part_004_2.fq.gz fastq fastq 119483176815.0 885060569.0 DP8400022137TL L01 read.part 004 1.fq.gz                       SRX28216546 SRS24541718 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35000 35000 SRR32942175 SRX28216545 SRS24541718 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 7 dpa heart   strain:not applicable|dev stage:7 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 7 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022136TL L01 read.T6 C1.part 004 DP8400022136TL L01 read.T6 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022136TL_L01_read.part_004_1.fq.gz DP8400022136TL_L01_read.part_004_2.fq.gz fastq fastq 129016315215.0 955676409.0 DP8400022136TL L01 read.part 004 1.fq.gz                       SRX28216545 SRS24541718 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35001 35001 SRR32942176 SRX28216544 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018805BL L01 read.DP8400016191TL D3.part 004 DP8400018805BL L01 read.DP8400016191TL D3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018805BL_L01_read.part_004_1.fq.gz DP8400018805BL_L01_read.part_004_2.fq.gz fastq fastq 61237875690.0 453613894.0 DP8400018805BL L01 read.part 004 1.fq.gz 0:35 1:100 A:15070939100;C:16649524218;G:15610652660;T:13904423716;N:2335996 35 100     15070939100 16649524218 15610652660 13904423716 2335996 SRX28216544 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35002 35002 SRR32942177 SRX28216543 SRS24541720 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial uninjured heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022030BR L01 read.T1 C3.part 004 DP8400022030BR L01 read.T1 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022030BR_L01_read.part_004_1.fq.gz DP8400022030BR_L01_read.part_004_2.fq.gz fastq fastq 109611340155.0 811935853.0 DP8400022030BR L01 read.part 004 1.fq.gz                       SRX28216543 SRS24541720 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35003 35003 SRR32942178 SRX28216542 SRS24541720 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial uninjured heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022029BR L01 read.T1 C2.part 004 DP8400022029BR L01 read.T1 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022029BR_L01_read.part_004_1.fq.gz DP8400022029BR_L01_read.part_004_2.fq.gz fastq fastq 118325133180.0 876482468.0 DP8400022029BR L01 read.part 004 1.fq.gz                       SRX28216542 SRS24541720 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35004 35004 SRR32942179 SRX28216541 SRS24541719 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 28 dpa heart   strain:not applicable|dev stage:28 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 28 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400022027BR L01 read.T8 C2.part 004 DP8400022027BR L01 read.T8 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400022027BR_L01_read.part_004_1.fq.gz DP8400022027BR_L01_read.part_004_2.fq.gz fastq fastq 146070775035.0 1082005741.0 DP8400022027BR L01 read.part 004 1.fq.gz                       SRX28216541 SRS24541719 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35005 35005 SRR32942180 SRX28216540 SRS24541718 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 7 dpa heart   strain:not applicable|dev stage:7 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 7 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400020219TR L01 read.T6 C3.part 004 DP8400020219TR L01 read.T6 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400020219TR_L01_read.part_004_1.fq.gz DP8400020219TR_L01_read.part_004_2.fq.gz fastq fastq 108702511785.0 805203791.0 DP8400020219TR L01 read.part 004 1.fq.gz 0:35 1:100 A:30924612973;C:26615396197;G:25679719315;T:25478921953;N:3861347 35 100     30924612973 26615396197 25679719315 25478921953 3861347 SRX28216540 SRS24541718 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35006 35006 SRR32942181 SRX28216539 SRS24541717 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 1 dpa heart   strain:not applicable|dev stage:1 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 1 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400020217TR L01 read.T4 C3.part 004 DP8400020217TR L01 read.T4 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400020217TR_L01_read.part_004_1.fq.gz DP8400020217TR_L01_read.part_004_2.fq.gz fastq fastq 116478470205.0 862803483.0 DP8400020217TR L01 read.part 004 1.fq.gz                       SRX28216539 SRS24541717 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35007 35007 SRR32942182 SRX28216538 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019890BR L01 read.DP8400016191TL F5.part 004 DP8400019890BR L01 read.DP8400016191TL F5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019890BR_L01_read.part_004_1.fq.gz DP8400019890BR_L01_read.part_004_2.fq.gz fastq fastq 67687161435.0 501386381.0 DP8400019890BR L01 read.part 004 1.fq.gz 0:35 1:100 A:16750303312;C:18443583451;G:17234547138;T:15246774478;N:11953056 35 100     16750303312 18443583451 17234547138 15246774478 11953056 SRX28216538 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35008 35008 SRR32942183 SRX28216537 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019889BR L01 read.DP8400016191TL F4.part 004 DP8400019889BR L01 read.DP8400016191TL F4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019889BR_L01_read.part_004_1.fq.gz DP8400019889BR_L01_read.part_004_2.fq.gz fastq fastq 69163211475.0 512320085.0 DP8400019889BR L01 read.part 004 1.fq.gz 0:35 1:100 A:17200140488;C:18673099081;G:17606169239;T:15671289795;N:12512872 35 100     17200140488 18673099081 17606169239 15671289795 12512872 SRX28216537 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35009 35009 SRR32942184 SRX28216536 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019888BR L01 read.DP8400016191TL F4.part 004 DP8400019888BR L01 read.DP8400016191TL F4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019888BR_L01_read.part_004_1.fq.gz DP8400019888BR_L01_read.part_004_2.fq.gz fastq fastq 70870768695.0 524968657.0 DP8400019888BR L01 read.part 004 1.fq.gz 0:35 1:100 A:17716788507;C:19102464363;G:18005274901;T:16020272244;N:25968680 35 100     17716788507 19102464363 18005274901 16020272244 25968680 SRX28216536 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35010 35010 SRR32942185 SRX28216535 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019887BR L01 read.DP8400016191TL F3.part 004 DP8400019887BR L01 read.DP8400016191TL F3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019887BR_L01_read.part_004_1.fq.gz DP8400019887BR_L01_read.part_004_2.fq.gz fastq fastq 71573376465.0 530173159.0 DP8400019887BR L01 read.part 004 1.fq.gz 0:35 1:100 A:17781506777;C:19377727002;G:18235954033;T:16172068644;N:6120009 35 100     17781506777 19377727002 18235954033 16172068644 6120009 SRX28216535 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35011 35011 SRR32942186 SRX28216534 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019886BR L01 read.DP8400016191TL F3.part 004 DP8400019886BR L01 read.DP8400016191TL F3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019886BR_L01_read.part_004_1.fq.gz DP8400019886BR_L01_read.part_004_2.fq.gz fastq fastq 60759942480.0 450073648.0 DP8400019886BR L01 read.part 004 1.fq.gz 0:35 1:100 A:15019834483;C:16492456759;G:15444767358;T:13801185069;N:1698811 35 100     15019834483 16492456759 15444767358 13801185069 1698811 SRX28216534 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35012 35012 SRR32942187 SRX28216533 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018804BL L01 read.DP8400016191TL D3.part 004 DP8400018804BL L01 read.DP8400016191TL D3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018804BL_L01_read.part_004_1.fq.gz DP8400018804BL_L01_read.part_004_2.fq.gz fastq fastq 56526607215.0 418715609.0 DP8400018804BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14017626841;C:15298341903;G:14347464111;T:12860461394;N:2712966 35 100     14017626841 15298341903 14347464111 12860461394 2712966 SRX28216533 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35013 35013 SRR32942188 SRX28216532 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019885BR L01 read.DP8400016191TL F2.part 004 DP8400019885BR L01 read.DP8400016191TL F2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019885BR_L01_read.part_004_1.fq.gz DP8400019885BR_L01_read.part_004_2.fq.gz fastq fastq 67347176220.0 498867972.0 DP8400019885BR L01 read.part 004 1.fq.gz 0:35 1:100 A:16412099606;C:18498396843;G:17097251953;T:15337745292;N:1682526 35 100     16412099606 18498396843 17097251953 15337745292 1682526 SRX28216532 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35014 35014 SRR32942189 SRX28216531 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019858TR L01 read.DP8400016191TL F2.part 004 DP8400019858TR L01 read.DP8400016191TL F2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019858TR_L01_read.part_004_1.fq.gz DP8400019858TR_L01_read.part_004_2.fq.gz fastq fastq 73055162385.0 541149351.0 DP8400019858TR L01 read.part 004 1.fq.gz 0:35 1:100 A:17703615246;C:20135810722;G:18500467259;T:16713796960;N:1472198 35 100     17703615246 20135810722 18500467259 16713796960 1472198 SRX28216531 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35015 35015 SRR32942190 SRX28216530 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018977BR L01 read.DP8400016191TL E1.part 004 DP8400018977BR L01 read.DP8400016191TL E1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018977BR_L01_read.part_004_1.fq.gz DP8400018977BR_L01_read.part_004_2.fq.gz fastq fastq 59614832385.0 441591351.0 DP8400018977BR L01 read.part 004 1.fq.gz 0:35 1:100 A:14519744788;C:16428569581;G:15093422657;T:13571913895;N:1181464 35 100     14519744788 16428569581 15093422657 13571913895 1181464 SRX28216530 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35016 35016 SRR32942192 SRX28216529 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018976BR L01 read.DP8400016191TL D6.part 004 DP8400018976BR L01 read.DP8400016191TL D6.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018976BR_L01_read.part_004_1.fq.gz DP8400018976BR_L01_read.part_004_2.fq.gz fastq fastq 54281520360.0 402085336.0 DP8400018976BR L01 read.part 004 1.fq.gz 0:35 1:100 A:13404908415;C:14822868550;G:13663907351;T:12386919816;N:2916228 35 100     13404908415 14822868550 13663907351 12386919816 2916228 SRX28216529 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35017 35017 SRR32942193 SRX28216528 SRS24507289 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 33.sc 6hpa lib3 cDNA.part 004 FP200007602 L01 33.sc 6hpa lib3 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_33.part_004_1.fq.gz FP200007602_L01_33.part_004_2.fq.gz fastq fastq 52774563270.0 405958179.0 FP200007602 L01 33.part 004 1.fq.gz 0:30 1:100 A:14255454446;C:11937740507;G:12321730613;T:14259154459;N:483245 30 100     14255454446 11937740507 12321730613 14259154459 483245 SRX28216528 SRS24507289 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35018 35018 SRR32942194 SRX28216527 SRS24507289 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 32.sc 6hpa lib2 cDNA.part 004 FP200007602 L01 32.sc 6hpa lib2 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_32.part_004_1.fq.gz FP200007602_L01_32.part_004_2.fq.gz fastq fastq 49836891130.0 383360701.0 FP200007602 L01 32.part 004 1.fq.gz 0:30 1:100 A:13527273550;C:11075970476;G:11486011805;T:13747199019;N:436280 30 100     13527273550 11075970476 11486011805 13747199019 436280 SRX28216527 SRS24507289 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35019 35019 SRR32942195 SRX28216526 SRS24507289 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 31.sc 6hpa lib1 cDNA.part 004 FP200007602 L01 31.sc 6hpa lib1 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_31.part_004_1.fq.gz FP200007602_L01_31.part_004_2.fq.gz fastq fastq 45283656990.0 348335823.0 FP200007602 L01 31.part 004 1.fq.gz 0:30 1:100 A:12219395392;C:10086116075;G:10507331482;T:12470509810;N:304231 30 100     12219395392 10086116075 10507331482 12470509810 304231 SRX28216526 SRS24507289 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35020 35020 SRR32942196 SRX28216525 SRS24507288 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 30.sc 14dpa lib3 cDNA.part 004 FP200007602 L01 30.sc 14dpa lib3 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_30.part_004_1.fq.gz FP200007602_L01_30.part_004_2.fq.gz fastq fastq 51741663350.0 398012795.0 FP200007602 L01 30.part 004 1.fq.gz 0:30 1:100 A:14033851692;C:11617438535;G:11916304345;T:14173733846;N:334932 30 100     14033851692 11617438535 11916304345 14173733846 334932 SRX28216525 SRS24507288 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35021 35021 SRR32942197 SRX28216524 SRS24507288 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 29.sc 14dpa lib2 cDNA.part 004 FP200007602 L01 29.sc 14dpa lib2 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_29.part_004_1.fq.gz FP200007602_L01_29.part_004_2.fq.gz fastq fastq 54600571090.0 420004393.0 FP200007602 L01 29.part 004 1.fq.gz 0:30 1:100 A:14772829760;C:12292232249;G:12802221982;T:14732811472;N:475627 30 100     14772829760 12292232249 12802221982 14732811472 475627 SRX28216524 SRS24507288 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35022 35022 SRR32942198 SRX28216523 SRS24507288 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 28.sc 14dpa lib1 cDNA.part 004 FP200007602 L01 28.sc 14dpa lib1 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_28.part_004_1.fq.gz FP200007602_L01_28.part_004_2.fq.gz fastq fastq 53296161360.0 409970472.0 FP200007602 L01 28.part 004 1.fq.gz 0:30 1:100 A:14349566822;C:12164232434;G:12495328148;T:14286654669;N:379287 30 100     14349566822 12164232434 12495328148 14286654669 379287 SRX28216523 SRS24507288 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35023 35023 SRR32942199 SRX28216522 SRS24507279 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 27.sc uninjured lib6 cDNA.part 004 FP200007602 L01 27.sc uninjured lib6 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_27.part_004_1.fq.gz FP200007602_L01_27.part_004_2.fq.gz fastq fastq 40810493360.0 313926872.0 FP200007602 L01 27.part 004 1.fq.gz 0:30 1:100 A:11162512232;C:8919671826;G:9446668017;T:11281364211;N:277074 30 100     11162512232 8919671826 9446668017 11281364211 277074 SRX28216522 SRS24507279 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35024 35024 SRR32942200 SRX28216521 SRS24507279 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 26.sc uninjured lib5 cDNA.part 004 FP200007602 L01 26.sc uninjured lib5 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_26.part_004_1.fq.gz FP200007602_L01_26.part_004_2.fq.gz fastq fastq 48055989410.0 369661457.0 FP200007602 L01 26.part 004 1.fq.gz 0:30 1:100 A:13067367682;C:10607543012;G:11223724089;T:13157002276;N:352351 30 100     13067367682 10607543012 11223724089 13157002276 352351 SRX28216521 SRS24507279 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35025 35025 SRR32942201 SRX28216520 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018807BL L01 read.DP8400016191TL E3.part 004 DP8400018807BL L01 read.DP8400016191TL E3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018807BL_L01_read.part_004_1.fq.gz DP8400018807BL_L01_read.part_004_2.fq.gz fastq fastq 61323618375.0 454249025.0 DP8400018807BL L01 read.part 004 1.fq.gz 0:35 1:100 A:15248637921;C:16583252300;G:15380701071;T:14109458926;N:1568157 35 100     15248637921 16583252300 15380701071 14109458926 1568157 SRX28216520 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35026 35026 SRR32942202 SRX28216519 SRS24507279 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 25.sc uninjured lib4 cDNA.part 004 FP200007602 L01 25.sc uninjured lib4 cDNA.part 004 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_25.part_004_1.fq.gz FP200007602_L01_25.part_004_2.fq.gz fastq fastq 44668626860.0 343604822.0 FP200007602 L01 25.part 004 1.fq.gz 0:30 1:100 A:12037547321;C:9915662719;G:10482017047;T:12232983538;N:416235 30 100     12037547321 9915662719 10482017047 12232983538 416235 SRX28216519 SRS24507279 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35027 35027 SRR32942203 SRX28216518 SRS24541724 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 12 hpa heart   strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023504BL L01 read.T3 C3.part 004 DP8400023504BL L01 read.T3 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023504BL_L01_read.part_004_1.fq.gz DP8400023504BL_L01_read.part_004_2.fq.gz fastq fastq 111828836655.0 828361753.0 DP8400023504BL L01 read.part 004 1.fq.gz                       SRX28216518 SRS24541724 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35028 35028 SRR32942204 SRX28216517 SRS24541724 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 12 hpa heart   strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023503BL L01 read.T3 C2.part 004 DP8400023503BL L01 read.T3 C2.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023503BL_L01_read.part_004_1.fq.gz DP8400023503BL_L01_read.part_004_2.fq.gz fastq fastq 113313672765.0 839360539.0 DP8400023503BL L01 read.part 004 1.fq.gz                       SRX28216517 SRS24541724 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35029 35029 SRR32942205 SRX28216516 SRS24541724 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 12 hpa heart   strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023501BL L01 read.T3 C1.part 004 DP8400023501BL L01 read.T3 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023501BL_L01_read.part_004_1.fq.gz DP8400023501BL_L01_read.part_004_2.fq.gz fastq fastq 120371892885.0 891643651.0 DP8400023501BL L01 read.part 004 1.fq.gz                       SRX28216516 SRS24541724 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35030 35030 SRR32942206 SRX28216515 SRS24541721 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3 dpa heart   strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023368BR L01 read.T5 C3.part 004 DP8400023368BR L01 read.T5 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023368BR_L01_read.part_004_1.fq.gz DP8400023368BR_L01_read.part_004_2.fq.gz fastq fastq 126180702315.0 934671869.0 DP8400023368BR L01 read.part 004 1.fq.gz                       SRX28216515 SRS24541721 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35031 35031 SRR32942207 SRX28216514 SRS24541719 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 28 dpa heart   strain:not applicable|dev stage:28 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 28 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023367BR L01 read.T8 C1.part 004 DP8400023367BR L01 read.T8 C1.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023367BR_L01_read.part_004_1.fq.gz DP8400023367BR_L01_read.part_004_2.fq.gz fastq fastq 150425834670.0 1114265442.0 DP8400023367BR L01 read.part 004 1.fq.gz                       SRX28216514 SRS24541719 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35032 35032 SRR32942208 SRX28216513 SRS24541723 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 14 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023365BR L01 read.T7 C3.part 004 DP8400023365BR L01 read.T7 C3.part 004 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023365BR_L01_read.part_004_1.fq.gz DP8400023365BR_L01_read.part_004_2.fq.gz fastq fastq 108864537705.0 806403983.0 DP8400023365BR L01 read.part 004 1.fq.gz                       SRX28216513 SRS24541723 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35033 35033 SRR32942191 SRX28216512 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019715TR L01 read.DP8400016191TL E1.part 004 DP8400019715TR L01 read.DP8400016191TL E1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019715TR_L01_read.part_004_1.fq.gz DP8400019715TR_L01_read.part_004_2.fq.gz fastq fastq 56887229610.0 421386886.0 DP8400019715TR L01 read.part 004 1.fq.gz 0:35 1:100 A:13870712104;C:15595391056;G:14309367543;T:13110498763;N:1260144 35 100     13870712104 15595391056 14309367543 13110498763 1260144 SRX28216512 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35034 35034 SRR32942210 SRX28216511 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019714TR L01 read.DP8400016191TL E2.part 004 DP8400019714TR L01 read.DP8400016191TL E2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019714TR_L01_read.part_004_1.fq.gz DP8400019714TR_L01_read.part_004_2.fq.gz fastq fastq 56375774685.0 417598331.0 DP8400019714TR L01 read.part 004 1.fq.gz 0:35 1:100 A:13803413830;C:15453118314;G:14099656050;T:13018786315;N:800176 35 100     13803413830 15453118314 14099656050 13018786315 800176 SRX28216511 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35035 35035 SRR32942211 SRX28216510 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019713TR L01 read.DP8400016191TL E2.part 004 DP8400019713TR L01 read.DP8400016191TL E2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019713TR_L01_read.part_004_1.fq.gz DP8400019713TR_L01_read.part_004_2.fq.gz fastq fastq 58122189630.0 430534738.0 DP8400019713TR L01 read.part 004 1.fq.gz 0:35 1:100 A:14213774894;C:15888338538;G:14515295010;T:13503534556;N:1246632 35 100     14213774894 15888338538 14515295010 13503534556 1246632 SRX28216510 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35036 35036 SRR32942212 SRX28216509 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019712TR L01 read.DP8400016191TL E3.part 004 DP8400019712TR L01 read.DP8400016191TL E3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019712TR_L01_read.part_004_1.fq.gz DP8400019712TR_L01_read.part_004_2.fq.gz fastq fastq 64191657600.0 475493760.0 DP8400019712TR L01 read.part 004 1.fq.gz 0:35 1:100 A:15909278786;C:17394570578;G:16092725759;T:14794040874;N:1041603 35 100     15909278786 17394570578 16092725759 14794040874 1041603 SRX28216509 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35037 35037 SRR32942213 SRX28216508 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019710TR L01 read.DP8400016191TL E4.part 004 DP8400019710TR L01 read.DP8400016191TL E4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019710TR_L01_read.part_004_1.fq.gz DP8400019710TR_L01_read.part_004_2.fq.gz fastq fastq 60679091790.0 449474754.0 DP8400019710TR L01 read.part 004 1.fq.gz 0:35 1:100 A:15172342484;C:16330220525;G:15097490343;T:14077311462;N:1726976 35 100     15172342484 16330220525 15097490343 14077311462 1726976 SRX28216508 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35038 35038 SRR32942214 SRX28216507 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019709TR L01 read.DP8400016191TL E4.part 004 DP8400019709TR L01 read.DP8400016191TL E4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019709TR_L01_read.part_004_1.fq.gz DP8400019709TR_L01_read.part_004_2.fq.gz fastq fastq 66639731940.0 493627644.0 DP8400019709TR L01 read.part 004 1.fq.gz 0:35 1:100 A:16606912294;C:17977284542;G:16608869027;T:15445680693;N:985384 35 100     16606912294 17977284542 16608869027 15445680693 985384 SRX28216507 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35039 35039 SRR32942215 SRX28216506 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019708TR L01 read.DP8400016191TL E5.part 004 DP8400019708TR L01 read.DP8400016191TL E5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019708TR_L01_read.part_004_1.fq.gz DP8400019708TR_L01_read.part_004_2.fq.gz fastq fastq 57866361930.0 428639718.0 DP8400019708TR L01 read.part 004 1.fq.gz 0:35 1:100 A:14518123759;C:15559434114;G:14538269216;T:13248792062;N:1742779 35 100     14518123759 15559434114 14538269216 13248792062 1742779 SRX28216506 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35040 35040 SRR32942216 SRX28216505 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019707TR L01 read.DP8400016191TL E5.part 004 DP8400019707TR L01 read.DP8400016191TL E5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019707TR_L01_read.part_004_1.fq.gz DP8400019707TR_L01_read.part_004_2.fq.gz fastq fastq 65725558785.0 486855991.0 DP8400019707TR L01 read.part 004 1.fq.gz 0:35 1:100 A:16371937642;C:17751925189;G:16510484140;T:15089850883;N:1360931 35 100     16371937642 17751925189 16510484140 15089850883 1360931 SRX28216505 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35041 35041 SRR32942217 SRX28216504 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018803BL L01 read.DP8400016191TL D4.part 004 DP8400018803BL L01 read.DP8400016191TL D4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018803BL_L01_read.part_004_1.fq.gz DP8400018803BL_L01_read.part_004_2.fq.gz fastq fastq 58917652560.0 436427056.0 DP8400018803BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14596247471;C:16033305880;G:14761529505;T:13524460641;N:2109063 35 100     14596247471 16033305880 14761529505 13524460641 2109063 SRX28216504 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35042 35042 SRR32942218 SRX28216503 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019706TR L01 read.DP8400016191TL E6.part 004 DP8400019706TR L01 read.DP8400016191TL E6.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019706TR_L01_read.part_004_1.fq.gz DP8400019706TR_L01_read.part_004_2.fq.gz fastq fastq 59035968045.0 437303467.0 DP8400019706TR L01 read.part 004 1.fq.gz 0:35 1:100 A:14937447816;C:15778663559;G:14778860228;T:13539227677;N:1768765 35 100     14937447816 15778663559 14778860228 13539227677 1768765 SRX28216503 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35043 35043 SRR32942219 SRX28216502 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019559BL L01 read.DP8400016197TL C1.part 004 DP8400019559BL L01 read.DP8400016197TL C1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019559BL_L01_read.part_004_1.fq.gz DP8400019559BL_L01_read.part_004_2.fq.gz fastq fastq 56848645395.0 421101077.0 DP8400019559BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14099708260;C:15436492335;G:14445736914;T:12863510055;N:3197831 35 100     14099708260 15436492335 14445736914 12863510055 3197831 SRX28216502 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35044 35044 SRR32942220 SRX28216501 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019558BL L01 read.DP8400016197TL C2.part 004 DP8400019558BL L01 read.DP8400016197TL C2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019558BL_L01_read.part_004_1.fq.gz DP8400019558BL_L01_read.part_004_2.fq.gz fastq fastq 63244384335.0 468476921.0 DP8400019558BL L01 read.part 004 1.fq.gz 0:35 1:100 A:15919772201;C:16882264529;G:15805539449;T:14634620136;N:2188020 35 100     15919772201 16882264529 15805539449 14634620136 2188020 SRX28216501 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35045 35045 SRR32942221 SRX28216500 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019557BL L01 read.DP8400016197TL C2.part 004 DP8400019557BL L01 read.DP8400016197TL C2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019557BL_L01_read.part_004_1.fq.gz DP8400019557BL_L01_read.part_004_2.fq.gz fastq fastq 60407574255.0 447463513.0 DP8400019557BL L01 read.part 004 1.fq.gz 0:35 1:100 A:15296237741;C:16083774145;G:15118450652;T:13906133645;N:2978072 35 100     15296237741 16083774145 15118450652 13906133645 2978072 SRX28216500 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35046 35046 SRR32942222 SRX28216499 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019556BL L01 read.DP8400016197TL C3.part 004 DP8400019556BL L01 read.DP8400016197TL C3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019556BL_L01_read.part_004_1.fq.gz DP8400019556BL_L01_read.part_004_2.fq.gz fastq fastq 52927313625.0 392054175.0 DP8400019556BL L01 read.part 004 1.fq.gz 0:35 1:100 A:12834479906;C:14675308042;G:13372712001;T:12043032938;N:1780738 35 100     12834479906 14675308042 13372712001 12043032938 1780738 SRX28216499 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35047 35047 SRR32942223 SRX28216498 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019555BL L01 read.DP8400016197TL C3.part 004 DP8400019555BL L01 read.DP8400016197TL C3.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019555BL_L01_read.part_004_1.fq.gz DP8400019555BL_L01_read.part_004_2.fq.gz fastq fastq 58336252785.0 432120391.0 DP8400019555BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14149253903;C:16281644985;G:14623244381;T:13280846811;N:1262705 35 100     14149253903 16281644985 14623244381 13280846811 1262705 SRX28216498 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 2e-05 0.00339 1e-05 0.00045 1.0 0.99358   0.55516 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35048 35048 SRR32942224 SRX28216497 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019554BL L01 read.DP8400016197TL C4.part 004 DP8400019554BL L01 read.DP8400016197TL C4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019554BL_L01_read.part_004_1.fq.gz DP8400019554BL_L01_read.part_004_2.fq.gz fastq fastq 57901639860.0 428901036.0 DP8400019554BL L01 read.part 004 1.fq.gz 0:35 1:100 A:13971374150;C:16205418712;G:14499792932;T:13223641672;N:1412394 35 100     13971374150 16205418712 14499792932 13223641672 1412394 SRX28216497 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35049 35049 SRR32942225 SRX28216496 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019149BL L01 read.DP8400016191TL D2.part 004 DP8400019149BL L01 read.DP8400016191TL D2.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019149BL_L01_read.part_004_1.fq.gz DP8400019149BL_L01_read.part_004_2.fq.gz fastq fastq 70577576910.0 522796866.0 DP8400019149BL L01 read.part 004 1.fq.gz 0:35 1:100 A:17589101826;C:18925687897;G:17618780143;T:16441848073;N:2158971 35 100     17589101826 18925687897 17618780143 16441848073 2158971 SRX28216496 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35050 35050 SRR32942226 SRX28216495 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019148BL L01 read.DP8400016191TL D1.part 004 DP8400019148BL L01 read.DP8400016191TL D1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019148BL_L01_read.part_004_1.fq.gz DP8400019148BL_L01_read.part_004_2.fq.gz fastq fastq 62399847285.0 462221091.0 DP8400019148BL L01 read.part 004 1.fq.gz 0:35 1:100 A:15464876963;C:16961780857;G:15877470346;T:14094212854;N:1506265 35 100     15464876963 16961780857 15877470346 14094212854 1506265 SRX28216495 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 1e-05 0.00579 0.0 0.00048 1.0 0.99157   0.56004 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35051 35051 SRR32942227 SRX28216494 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019147BL L01 read.DP8400016191TL D1.part 004 DP8400019147BL L01 read.DP8400016191TL D1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019147BL_L01_read.part_004_1.fq.gz DP8400019147BL_L01_read.part_004_2.fq.gz fastq fastq 61109090820.0 452659932.0 DP8400019147BL L01 read.part 004 1.fq.gz 0:35 1:100 A:15153687436;C:16545816882;G:15627412081;T:13780203359;N:1971062 35 100     15153687436 16545816882 15627412081 13780203359 1971062 SRX28216494 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 1e-05 0.00446 0.0 0.00044 1.0 0.99297   0.58792 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35052 35052 SRR32942228 SRX28216493 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018802BL L01 read.DP8400016191TL D4.part 004 DP8400018802BL L01 read.DP8400016191TL D4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018802BL_L01_read.part_004_1.fq.gz DP8400018802BL_L01_read.part_004_2.fq.gz fastq fastq 56258245710.0 416727746.0 DP8400018802BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14071296795;C:15113672510;G:14240086425;T:12804666622;N:28523358 35 100     14071296795 15113672510 14240086425 12804666622 28523358 SRX28216493 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.0 0.02834 0.0 0.00468 1.0 0.97149   0.52556 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35053 35053 SRR32942229 SRX28216492 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019146BL L01 read.DP8400016191TL C6.part 004 DP8400019146BL L01 read.DP8400016191TL C6.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019146BL_L01_read.part_004_1.fq.gz DP8400019146BL_L01_read.part_004_2.fq.gz fastq fastq 58947801705.0 436650383.0 DP8400019146BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14473403443;C:16127629210;G:15016338954;T:13328393333;N:2036765 35 100     14473403443 16127629210 15016338954 13328393333 2036765 SRX28216492 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 2e-05 0.00122 1e-05 0.00014 1.0 0.99768   0.5 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35054 35054 SRR32942230 SRX28216491 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019145BL L01 read.DP8400016191TL C6.part 004 DP8400019145BL L01 read.DP8400016191TL C6.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019145BL_L01_read.part_004_1.fq.gz DP8400019145BL_L01_read.part_004_2.fq.gz fastq fastq 60477314040.0 447980104.0 DP8400019145BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14861942557;C:16529917022;G:15384750292;T:13698531085;N:2173084 35 100     14861942557 16529917022 15384750292 13698531085 2173084 SRX28216491 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35055 35055 SRR32942231 SRX28216490 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019086BR L01 read.DP8400016197TL C4.part 004 DP8400019086BR L01 read.DP8400016197TL C4.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019086BR_L01_read.part_004_1.fq.gz DP8400019086BR_L01_read.part_004_2.fq.gz fastq fastq 63418251375.0 469764825.0 DP8400019086BR L01 read.part 004 1.fq.gz 0:35 1:100 A:15167810702;C:17819808904;G:15876068522;T:14552188503;N:2374744 35 100     15167810702 17819808904 15876068522 14552188503 2374744 SRX28216490 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 2e-05 0.00603 1e-05 0.00064 1.0 0.99048   0.54794 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35056 35056 SRR32942232 SRX28216489 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019085BR L01 read.DP8400016197TL C5.part 004 DP8400019085BR L01 read.DP8400016197TL C5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019085BR_L01_read.part_004_1.fq.gz DP8400019085BR_L01_read.part_004_2.fq.gz fastq fastq 59635391670.0 441743642.0 DP8400019085BR L01 read.part 004 1.fq.gz 0:35 1:100 A:14747118720;C:16399073853;G:14975948373;T:13510473168;N:2777556 35 100     14747118720 16399073853 14975948373 13510473168 2777556 SRX28216489 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 3e-05 0.00376 2e-05 0.00049 1.0 0.99375   0.59546 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35057 35057 SRR32942233 SRX28216488 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019084BR L01 read.DP8400016197TL C5.part 004 DP8400019084BR L01 read.DP8400016197TL C5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019084BR_L01_read.part_004_1.fq.gz DP8400019084BR_L01_read.part_004_2.fq.gz fastq fastq 73560691080.0 544894008.0 DP8400019084BR L01 read.part 004 1.fq.gz 0:35 1:100 A:17949905952;C:20368196976;G:18524935582;T:16715123340;N:2529230 35 100     17949905952 20368196976 18524935582 16715123340 2529230 SRX28216488 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35058 35058 SRR32942234 SRX28216487 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019079BR L01 read.DP8400016191TL F5.part 004 DP8400019079BR L01 read.DP8400016191TL F5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019079BR_L01_read.part_004_1.fq.gz DP8400019079BR_L01_read.part_004_2.fq.gz fastq fastq 68167421235.0 504943861.0 DP8400019079BR L01 read.part 004 1.fq.gz 0:35 1:100 A:16649586341;C:18680058276;G:17357353071;T:15478214481;N:2209066 35 100     16649586341 18680058276 17357353071 15478214481 2209066 SRX28216487 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35059 35059 SRR32942235 SRX28216486 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400019076BR L01 read.DP8400016197TL C1.part 004 DP8400019076BR L01 read.DP8400016197TL C1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400019076BR_L01_read.part_004_1.fq.gz DP8400019076BR_L01_read.part_004_2.fq.gz fastq fastq 53805979620.0 398562812.0 DP8400019076BR L01 read.part 004 1.fq.gz 0:35 1:100 A:13247593691;C:14793052160;G:13494868839;T:12266565284;N:3899646 35 100     13247593691 14793052160 13494868839 12266565284 3899646 SRX28216486 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 2e-05 0.01012 1e-05 0.00168 1.0 0.98524   0.56293 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35060 35060 SRR32942236 SRX28216485 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018980BR L01 read.DP8400016191TL F1.part 004 DP8400018980BR L01 read.DP8400016191TL F1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018980BR_L01_read.part_004_1.fq.gz DP8400018980BR_L01_read.part_004_2.fq.gz fastq fastq 67132205325.0 497275595.0 DP8400018980BR L01 read.part 004 1.fq.gz 0:35 1:100 A:16568981023;C:18166652562;G:16840682131;T:15554230958;N:1658651 35 100     16568981023 18166652562 16840682131 15554230958 1658651 SRX28216485 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35061 35061 SRR32942237 SRX28216484 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018979BR L01 read.DP8400016191TL F1.part 004 DP8400018979BR L01 read.DP8400016191TL F1.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018979BR_L01_read.part_004_1.fq.gz DP8400018979BR_L01_read.part_004_2.fq.gz fastq fastq 63284306535.0 468772641.0 DP8400018979BR L01 read.part 004 1.fq.gz 0:35 1:100 A:15665021886;C:17101051964;G:15876594234;T:14639144233;N:2494218 35 100     15665021886 17101051964 15876594234 14639144233 2494218 SRX28216484 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35062 35062 SRR32942238 SRX28216483 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018978BR L01 read.DP8400016191TL E6.part 004 DP8400018978BR L01 read.DP8400016191TL E6.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018978BR_L01_read.part_004_1.fq.gz DP8400018978BR_L01_read.part_004_2.fq.gz fastq fastq 59094081900.0 437733940.0 DP8400018978BR L01 read.part 004 1.fq.gz 0:35 1:100 A:14851914535;C:15828389532;G:14979211309;T:13431434713;N:3131811 35 100     14851914535 15828389532 14979211309 13431434713 3131811 SRX28216483 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35063 35063 SRR32942239 SRX28216482 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018801BL L01 read.DP8400016191TL D5.part 004 DP8400018801BL L01 read.DP8400016191TL D5.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018801BL_L01_read.part_004_1.fq.gz DP8400018801BL_L01_read.part_004_2.fq.gz fastq fastq 58191046785.0 431044791.0 DP8400018801BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14010395436;C:16359766643;G:14698012792;T:13122125742;N:746172 35 100     14010395436 16359766643 14698012792 13122125742 746172 SRX28216482 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35064 35064 SRR32942240 SRX28216481 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018799BL L01 read.DP8400016191TL D6.part 004 DP8400018799BL L01 read.DP8400016191TL D6.part 004 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018799BL_L01_read.part_004_1.fq.gz DP8400018799BL_L01_read.part_004_2.fq.gz fastq fastq 59327317890.0 439461614.0 DP8400018799BL L01 read.part 004 1.fq.gz 0:35 1:100 A:14554524145;C:16303529740;G:14827173425;T:13640037481;N:2053099 35 100     14554524145 16303529740 14827173425 13640037481 2053099 SRX28216481 SRS24507277 SRA2105098 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35065 35065 SRR32941743 SRX28216141 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018977BR L01 read.DP8400016191TL E1.part 003 DP8400018977BR L01 read.DP8400016191TL E1.part 003 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018977BR_L01_read.part_003_1.fq.gz DP8400018977BR_L01_read.part_003_2.fq.gz fastq fastq 59614832385.0 441591351.0 DP8400018977BR L01 read.part 003 1.fq.gz 0:35 1:100 A:14519835844;C:16428434790;G:15093247607;T:13572136948;N:1177196 35 100     14519835844 16428434790 15093247607 13572136948 1177196 SRX28216141 SRS24507277 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35066 35066 SRR32941744 SRX28216140 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018976BR L01 read.DP8400016191TL D6.part 003 DP8400018976BR L01 read.DP8400016191TL D6.part 003 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018976BR_L01_read.part_003_1.fq.gz DP8400018976BR_L01_read.part_003_2.fq.gz fastq fastq 54281520360.0 402085336.0 DP8400018976BR L01 read.part 003 1.fq.gz 0:35 1:100 A:13404837461;C:14823033042;G:13663623989;T:12387112146;N:2913722 35 100     13404837461 14823033042 13663623989 12387112146 2913722 SRX28216140 SRS24507277 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 2e-05 0.04912 1e-05 0.00838 1.0 0.95747   0.55707 35 100 T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35067 35067 SRR32941745 SRX28216139 SRS24507289 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 33.sc 6hpa lib3 cDNA.part 003 FP200007602 L01 33.sc 6hpa lib3 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_33.part_003_1.fq.gz FP200007602_L01_33.part_003_2.fq.gz fastq fastq 52774563400.0 405958180.0 FP200007602 L01 33.part 003 1.fq.gz 0:30 1:100 A:14255217265;C:11937793636;G:12321950106;T:14259119912;N:482481 30 100     14255217265 11937793636 12321950106 14259119912 482481 SRX28216139 SRS24507289 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.0001 0.89958 6e-05 0.09055 0.99989 0.79582 0.8 0.56089 30 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35068 35068 SRR32941746 SRX28216138 SRS24507289 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 32.sc 6hpa lib2 cDNA.part 003 FP200007602 L01 32.sc 6hpa lib2 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_32.part_003_1.fq.gz FP200007602_L01_32.part_003_2.fq.gz fastq fastq 49836891130.0 383360701.0 FP200007602 L01 32.part 003 1.fq.gz 0:30 1:100 A:13527204507;C:11075810906;G:11486107221;T:13747331467;N:437029 30 100     13527204507 11075810906 11486107221 13747331467 437029 SRX28216138 SRS24507289 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35069 35069 SRR32941747 SRX28216137 SRS24507289 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 6 hpa heart   strain:not applicable|dev stage:6 hpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 6 hpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 31.sc 6hpa lib1 cDNA.part 003 FP200007602 L01 31.sc 6hpa lib1 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_31.part_003_1.fq.gz FP200007602_L01_31.part_003_2.fq.gz fastq fastq 45283656990.0 348335823.0 FP200007602 L01 31.part 003 1.fq.gz 0:30 1:100 A:12219343085;C:10085969004;G:10507694258;T:12470346266;N:304377 30 100     12219343085 10085969004 10507694258 12470346266 304377 SRX28216137 SRS24507289 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.00014 0.90476 0.00013 0.13012 0.99997 0.78277 1.0 0.4927 30 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35070 35070 SRR32941748 SRX28216136 SRS24507288 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 30.sc 14dpa lib3 cDNA.part 003 FP200007602 L01 30.sc 14dpa lib3 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_30.part_003_1.fq.gz FP200007602_L01_30.part_003_2.fq.gz fastq fastq 51741663350.0 398012795.0 FP200007602 L01 30.part 003 1.fq.gz 0:30 1:100 A:14033964579;C:11617374103;G:11916181919;T:14173807100;N:335649 30 100     14033964579 11617374103 11916181919 14173807100 335649 SRX28216136 SRS24507288 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.00013 0.90199 0.00012 0.12841 0.99997 0.78535 1.0 0.51663 30 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35071 35071 SRR32941749 SRX28216135 SRS24507288 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 29.sc 14dpa lib2 cDNA.part 003 FP200007602 L01 29.sc 14dpa lib2 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_29.part_003_1.fq.gz FP200007602_L01_29.part_003_2.fq.gz fastq fastq 54600571090.0 420004393.0 FP200007602 L01 29.part 003 1.fq.gz 0:30 1:100 A:14772663533;C:12292176645;G:12802178748;T:14733076027;N:476137 30 100     14772663533 12292176645 12802178748 14733076027 476137 SRX28216135 SRS24507288 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.00013 0.81175 0.00012 0.12933 0.99997 0.79149 0.0 0.55331 30 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35072 35072 SRR32941750 SRX28216134 SRS24507288 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc 14 dpa heart   strain:not applicable|dev stage:14 dpa|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc 14 dpa heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 28.sc 14dpa lib1 cDNA.part 003 FP200007602 L01 28.sc 14dpa lib1 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_28.part_003_1.fq.gz FP200007602_L01_28.part_003_2.fq.gz fastq fastq 53296161360.0 409970472.0 FP200007602 L01 28.part 003 1.fq.gz 0:30 1:100 A:14349548475;C:12163921271;G:12495289865;T:14287023113;N:378636 30 100     14349548475 12163921271 12495289865 14287023113 378636 SRX28216134 SRS24507288 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35073 35073 SRR32941751 SRX28216133 SRS24507279 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 27.sc uninjured lib6 cDNA.part 003 FP200007602 L01 27.sc uninjured lib6 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_27.part_003_1.fq.gz FP200007602_L01_27.part_003_2.fq.gz fastq fastq 40810493360.0 313926872.0 FP200007602 L01 27.part 003 1.fq.gz 0:30 1:100 A:11162306799;C:8919510948;G:9446757832;T:11281638835;N:278946 30 100     11162306799 8919510948 9446757832 11281638835 278946 SRX28216133 SRS24507279 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35074 35074 SRR32941752 SRX28216132 SRS24507279 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 26.sc uninjured lib5 cDNA.part 003 FP200007602 L01 26.sc uninjured lib5 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_26.part_003_1.fq.gz FP200007602_L01_26.part_003_2.fq.gz fastq fastq 48055989540.0 369661458.0 FP200007602 L01 26.part 003 1.fq.gz 0:30 1:100 A:13066998544;C:10607831538;G:11224043416;T:13156761919;N:354123 30 100     13066998544 10607831538 11224043416 13156761919 354123 SRX28216132 SRS24507279 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35075 35075 SRR32941753 SRX28216131 SRS24507277 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3D heart   strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal                 Stereo seq of 3D zebrafish heart DP8400018807BL L01 read.DP8400016191TL E3.part 003 DP8400018807BL L01 read.DP8400016191TL E3.part 003 Stereo seq of 3D zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400018807BL_L01_read.part_003_1.fq.gz DP8400018807BL_L01_read.part_003_2.fq.gz fastq fastq 61323618375.0 454249025.0 DP8400018807BL L01 read.part 003 1.fq.gz 0:35 1:100 A:15248493015;C:16583288261;G:15380807329;T:14109460891;N:1568879 35 100     15248493015 16583288261 15380807329 14109460891 1568879 SRX28216131 SRS24507277 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T T mates < 9% mapping rate bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35076 35076 SRR32941754 SRX28216130 SRS24507279 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         sc uninjured heart   strain:not applicable|dev stage:uninjured|collection date:2022 09|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:sc uninjured heart|BioSampleModel:Model organism or animal                 scRNA seq of zebrafish heart FP200007602 L01 25.sc uninjured lib4 cDNA.part 003 FP200007602 L01 25.sc uninjured lib4 cDNA.part 003 scRNA seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     FP200007602_L01_25.part_003_1.fq.gz FP200007602_L01_25.part_003_2.fq.gz fastq fastq 44668626860.0 343604822.0 FP200007602 L01 25.part 003 1.fq.gz 0:30 1:100 A:12037600502;C:9915599565;G:10481918097;T:12233092728;N:415968 30 100     12037600502 9915599565 10481918097 12233092728 415968 SRX28216130 SRS24507279 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35077 35077 SRR32941755 SRX28216129 SRS24541724 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 12 hpa heart   strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023504BL L01 read.T3 C3.part 003 DP8400023504BL L01 read.T3 C3.part 003 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023504BL_L01_read.part_003_1.fq.gz DP8400023504BL_L01_read.part_003_2.fq.gz fastq fastq 111828836655.0 828361753.0 DP8400023504BL L01 read.part 003 1.fq.gz                       SRX28216129 SRS24541724 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.00014 0.27181 0.00012 0.07381 0.99995 0.90082 0.5 0.65275 35 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35078 35078 SRR32941756 SRX28216128 SRS24541724 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 12 hpa heart   strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023503BL L01 read.T3 C2.part 003 DP8400023503BL L01 read.T3 C2.part 003 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023503BL_L01_read.part_003_1.fq.gz DP8400023503BL_L01_read.part_003_2.fq.gz fastq fastq 113313672900.0 839360540.0 DP8400023503BL L01 read.part 003 1.fq.gz                       SRX28216128 SRS24541724 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.00026 0.36533 0.00024 0.09695 0.99993 0.8804 0.66666 0.66049 35 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35079 35079 SRR32941757 SRX28216127 SRS24541724 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 12 hpa heart   strain:not applicable|dev stage:12 hpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 12 hpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023501BL L01 read.T3 C1.part 003 DP8400023501BL L01 read.T3 C1.part 003 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023501BL_L01_read.part_003_1.fq.gz DP8400023501BL_L01_read.part_003_2.fq.gz fastq fastq 120371892885.0 891643651.0 DP8400023501BL L01 read.part 003 1.fq.gz                       SRX28216127 SRS24541724 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China 2 0.00051 0.5198 0.00044 0.11646 0.99975 0.84451 0.58333 0.61986 35 100 T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System
35080 35080 SRR32941758 SRX28216126 SRS24541721 SRP573401 PRJNA1233465 An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart PRJNA1233465 Other Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points.         spatial 3 dpa heart   strain:not applicable|dev stage:3 dpa|collection date:2021 08|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3 dpa heart|BioSampleModel:Model organism or animal                 Stereo seq of zebrafish heart DP8400023368BR L01 read.T5 C3.part 003 DP8400023368BR L01 read.T5 C3.part 003 Stereo seq of zebrafish heart     RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-T7   SRP573401     DP8400023368BR_L01_read.part_003_1.fq.gz DP8400023368BR_L01_read.part_003_2.fq.gz fastq fastq 126180702450.0 934671870.0 DP8400023368BR L01 read.part 003 1.fq.gz                       SRX28216126 SRS24541721 SRA2105097 BGI Research BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China                       T B mate1 technical by mapping diff bgi bgi unknown cdna_unspecified unknown sc_generic single_cell_generic generic-scrnaseq-only   China 2025-04-02 Undetermined Adult Heart Cardiovascular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;