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39 rows where experiment.library_strategy = "AMPLICON" and tissue_curation_coarse = "Surface Structure"

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tissue_curation_coarse 1

  • Surface Structure · 39 ✖

tissue_curation 1

technology 1

experiment.platform 1

experiment.library_strategy 1

  • AMPLICON · 39 ✖

experiment.library_source 1

experiment.library_selection 1

experiment.library_layout 1

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
70846 70846 SRR20822767 SRX16842343 SRS14446856 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 6   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 6|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 39 ZF 39 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP389580     ZF_Tu2_10_R1.fastq.gz ZF_Tu2_10_R2.fastq.gz ZF_Tu2_11_R1.fastq.gz ZF_Tu2_11_R2.fastq.gz ZF_Tu2_12_R1.fastq.gz ZF_Tu2_12_R2.fastq.gz ZF_Tu2_13_R1.fastq.gz ZF_Tu2_13_R2.fastq.gz ZF_Tu2_14_R1.fastq.gz ZF_Tu2_14_R2.fastq.gz ZF_Tu2_15_R1.fastq.gz ZF_Tu2_15_R2.fastq.gz ZF_Tu2_16_R1.fastq.gz ZF_Tu2_16_R2.fastq.gz ZF_Tu2_1_R1.fastq.gz ZF_Tu2_1_R2.fastq.gz ZF_Tu2_2_R1.fastq.gz ZF_Tu2_2_R2.fastq.gz ZF_Tu2_3_R1.fastq.gz ZF_Tu2_3_R2.fastq.gz ZF_Tu2_4_R1.fastq.gz ZF_Tu2_4_R2.fastq.gz ZF_Tu2_5_R1.fastq.gz ZF_Tu2_5_R2.fastq.gz ZF_Tu2_6_R1.fastq.gz ZF_Tu2_6_R2.fastq.gz ZF_Tu2_7_R1.fastq.gz ZF_Tu2_7_R2.fastq.gz ZF_Tu2_8_R1.fastq.gz ZF_Tu2_8_R2.fastq.gz ZF_Tu2_9_R1.fastq.gz ZF_Tu2_9_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 19600815900.0 39045450.0 ZF Tu2 10 R1.fastq.gz 0:251 1:251 A:5586816283;C:3957164453;G:4183919538;T:5872635753;N:279873 251 251     5586816283 3957164453 4183919538 5872635753 279873 SRX16842343 SRS14446856 SRA1468938 Max Planck Institut|Boehm Max Planck Institut 2 0.23669 0.0002 0.00499 0.00015 0.98908 0.99993 0.27742 0.8 251 251 B T mate2 technical by mapping diff illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70847 70847 SRR20822058 SRX16841660 SRS14446856 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 6   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 6|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 37 ZF 37 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP389580     ZF_Tu2_10_R1.fastq.gz ZF_Tu2_10_R2.fastq.gz ZF_Tu2_11_R1.fastq.gz ZF_Tu2_11_R2.fastq.gz ZF_Tu2_12_R1.fastq.gz ZF_Tu2_12_R2.fastq.gz ZF_Tu2_13_R1.fastq.gz ZF_Tu2_13_R2.fastq.gz ZF_Tu2_14_R1.fastq.gz ZF_Tu2_14_R2.fastq.gz ZF_Tu2_15_R1.fastq.gz ZF_Tu2_15_R2.fastq.gz ZF_Tu2_16_R1.fastq.gz ZF_Tu2_16_R2.fastq.gz ZF_Tu2_1_R1.fastq.gz ZF_Tu2_1_R2.fastq.gz ZF_Tu2_2_R1.fastq.gz ZF_Tu2_2_R2.fastq.gz ZF_Tu2_3_R1.fastq.gz ZF_Tu2_3_R2.fastq.gz ZF_Tu2_4_R1.fastq.gz ZF_Tu2_4_R2.fastq.gz ZF_Tu2_5_R1.fastq.gz ZF_Tu2_5_R2.fastq.gz ZF_Tu2_6_R1.fastq.gz ZF_Tu2_6_R2.fastq.gz ZF_Tu2_7_R1.fastq.gz ZF_Tu2_7_R2.fastq.gz ZF_Tu2_8_R1.fastq.gz ZF_Tu2_8_R2.fastq.gz ZF_Tu2_9_R1.fastq.gz ZF_Tu2_9_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 28345644856.0 56465428.0 ZF Tu2 10 R1.fastq.gz 0:251 1:251 A:8023828983;C:5867289387;G:5956780834;T:8497336426;N:409226 251 251     8023828983 5867289387 5956780834 8497336426 409226 SRX16841660 SRS14446856 SRA1468916 Max Planck Institut|Boehm Max Planck Institut 2 0.24302 0.00391 0.0049 0.0036 0.98766 0.99965 0.25169 0.2619 251 251 B T mate2 technical by mapping diff illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70848 70848 SRR20821267 SRX16840871 SRS14445862 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 5   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 5|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 5 ZF 15 5 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     ZF_5_01_R1.fastq.gz ZF_5_01_R2.fastq.gz ZF_5_02_R1.fastq.gz ZF_5_02_R2.fastq.gz ZF_5_03_R1.fastq.gz ZF_5_03_R2.fastq.gz ZF_5_04_R1.fastq.gz ZF_5_04_R2.fastq.gz ZF_5_05_R1.fastq.gz ZF_5_05_R2.fastq.gz ZF_5_06_R1.fastq.gz ZF_5_06_R2.fastq.gz ZF_5_07_R1.fastq.gz ZF_5_07_R2.fastq.gz ZF_5_08_R1.fastq.gz ZF_5_08_R2.fastq.gz ZF_5_09_R1.fastq.gz ZF_5_09_R2.fastq.gz ZF_5_10_R1.fastq.gz ZF_5_10_R2.fastq.gz ZF_5_11_R1.fastq.gz ZF_5_11_R2.fastq.gz ZF_5_12_R1.fastq.gz ZF_5_12_R2.fastq.gz ZF_5_13_R1.fastq.gz ZF_5_13_R2.fastq.gz ZF_5_14_R1.fastq.gz ZF_5_14_R2.fastq.gz ZF_5_15_R1.fastq.gz ZF_5_15_R2.fastq.gz ZF_5_16_R1.fastq.gz ZF_5_16_R2.fastq.gz ZF_5_17_R1.fastq.gz ZF_5_17_R2.fastq.gz ZF_5_18_R1.fastq.gz ZF_5_18_R2.fastq.gz ZF_5_19_R1.fastq.gz ZF_5_19_R2.fastq.gz ZF_5_20_R1.fastq.gz ZF_5_20_R2.fastq.gz ZF_5_21_R1.fastq.gz ZF_5_21_R2.fastq.gz ZF_5_22_R1.fastq.gz ZF_5_22_R2.fastq.gz ZF_5_23_R1.fastq.gz ZF_5_23_R2.fastq.gz ZF_5_24_R1.fastq.gz ZF_5_24_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 20320004000.0 40640008.0 ZF 5 01 R1.fastq.gz 0:250 1:250 A:5513136568;C:4158821282;G:4255839821;T:6389137086;N:3069243 250 250     5513136568 4158821282 4255839821 6389137086 3069243 SRX16840871 SRS14445862 SRA1468898 Max Planck Institut|Boehm Max Planck Institut 2 0.48427 3e-05 0.0017 1e-05 0.99663 0.99997 0.55487 1.0 250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70849 70849 SRR20821266 SRX16840870 SRS14445861 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 4   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 4|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 4 ZF 15 4 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     ZF_4_01_R1.fastq.gz ZF_4_01_R2.fastq.gz ZF_4_02_R1.fastq.gz ZF_4_02_R2.fastq.gz ZF_4_03_R1.fastq.gz ZF_4_03_R2.fastq.gz ZF_4_04_R1.fastq.gz ZF_4_04_R2.fastq.gz ZF_4_05_R1.fastq.gz ZF_4_05_R2.fastq.gz ZF_4_06_R1.fastq.gz ZF_4_06_R2.fastq.gz ZF_4_07_R1.fastq.gz ZF_4_07_R2.fastq.gz ZF_4_08_R1.fastq.gz ZF_4_08_R2.fastq.gz ZF_4_09_R1.fastq.gz ZF_4_09_R2.fastq.gz ZF_4_10_R1.fastq.gz ZF_4_10_R2.fastq.gz ZF_4_11_R1.fastq.gz ZF_4_11_R2.fastq.gz ZF_4_12_R1.fastq.gz ZF_4_12_R2.fastq.gz ZF_4_13_R1.fastq.gz ZF_4_13_R2.fastq.gz ZF_4_14_R1.fastq.gz ZF_4_14_R2.fastq.gz ZF_4_15_R1.fastq.gz ZF_4_15_R2.fastq.gz ZF_4_16_R1.fastq.gz ZF_4_16_R2.fastq.gz ZF_4_17_R1.fastq.gz ZF_4_17_R2.fastq.gz ZF_4_18_R1.fastq.gz ZF_4_18_R2.fastq.gz ZF_4_19_R1.fastq.gz ZF_4_19_R2.fastq.gz ZF_4_20_R1.fastq.gz ZF_4_20_R2.fastq.gz ZF_4_21_R1.fastq.gz ZF_4_21_R2.fastq.gz ZF_4_22_R1.fastq.gz ZF_4_22_R2.fastq.gz ZF_4_23_R1.fastq.gz ZF_4_23_R2.fastq.gz ZF_4_24_R1.fastq.gz ZF_4_24_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 26480052500.0 52960105.0 ZF 4 01 R1.fastq.gz 0:250 1:250 A:7438425276;C:5364918772;G:5496497801;T:8176167902;N:4042749 250 250     7438425276 5364918772 5496497801 8176167902 4042749 SRX16840870 SRS14445861 SRA1468898 Max Planck Institut|Boehm Max Planck Institut 2 0.21859 0.00094 0.00058 0.00078 0.99734 0.99989 0.24747 0.38095 250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70850 70850 SRR20821265 SRX16840869 SRS14445860 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 3   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 3|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 3 ZF 15 3 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     ZF_3_01_R1.fastq.gz ZF_3_04_R1.fastq.gz ZF_3_04_R2.fastq.gz ZF_3_05_R1.fastq.gz ZF_3_05_R2.fastq.gz ZF_3_06_R1.fastq.gz ZF_3_06_R2.fastq.gz ZF_3_07_R1.fastq.gz ZF_3_07_R2.fastq.gz ZF_3_08_R1.fastq.gz ZF_3_08_R2.fastq.gz ZF_3_09_R1.fastq.gz ZF_3_09_R2.fastq.gz ZF_3_10_R1.fastq.gz ZF_3_10_R2.fastq.gz ZF_3_11_R1.fastq.gz ZF_3_11_R2.fastq.gz ZF_3_12_R1.fastq.gz ZF_3_12_R2.fastq.gz ZF_3_13_R1.fastq.gz ZF_3_13_R2.fastq.gz ZF_3_14_R1.fastq.gz ZF_3_14_R2.fastq.gz ZF_3_15_R1.fastq.gz ZF_3_15_R2.fastq.gz ZF_3_16_R1.fastq.gz ZF_3_16_R2.fastq.gz ZF_3_17_R1.fastq.gz ZF_3_17_R2.fastq.gz ZF_3_18_R1.fastq.gz ZF_3_18_R2.fastq.gz ZF_3_19_R1.fastq.gz ZF_3_19_R2.fastq.gz ZF_3_03_R2.fastq.gz ZF_3_03_R1.fastq.gz ZF_3_02_R2.fastq.gz ZF_3_02_R1.fastq.gz ZF_3_01_R2.fastq.gz ZF_3_20_R1.fastq.gz ZF_3_20_R2.fastq.gz ZF_3_21_R1.fastq.gz ZF_3_21_R2.fastq.gz ZF_3_22_R1.fastq.gz ZF_3_22_R2.fastq.gz ZF_3_23_R1.fastq.gz ZF_3_23_R2.fastq.gz ZF_3_24_R1.fastq.gz ZF_3_24_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 29081958500.0 58163917.0 ZF 3 01 R1.fastq.gz 0:250 1:250 A:7805451909;C:6022172769;G:6087748826;T:9162169304;N:4415692 250 250     7805451909 6022172769 6087748826 9162169304 4415692 SRX16840869 SRS14445860 SRA1468898 Max Planck Institut|Boehm Max Planck Institut 2 0.62325 0.00106 0.0032 0.00082 0.98957 0.99979 0.66228 0.16 250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70851 70851 SRR20821268 SRX16840868 SRS14446084 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 2   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 2|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 2 ZF 15 2 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     ZF_2_01_R1.fastq.gz ZF_2_01_R2.fastq.gz ZF_2_02_R1.fastq.gz ZF_2_02_R2.fastq.gz ZF_2_03_R1.fastq.gz ZF_2_03_R2.fastq.gz ZF_2_04_R1.fastq.gz ZF_2_04_R2.fastq.gz ZF_2_05_R1.fastq.gz ZF_2_05_R2.fastq.gz ZF_2_06_R1.fastq.gz ZF_2_06_R2.fastq.gz ZF_2_07_R1.fastq.gz ZF_2_07_R2.fastq.gz ZF_2_08_R1.fastq.gz ZF_2_08_R2.fastq.gz ZF_2_09_R1.fastq.gz ZF_2_09_R2.fastq.gz ZF_2_10_R1.fastq.gz ZF_2_10_R2.fastq.gz ZF_2_11_R1.fastq.gz ZF_2_11_R2.fastq.gz ZF_2_12_R1.fastq.gz ZF_2_12_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 11339660500.0 22679321.0 ZF 2 01 R1.fastq.gz 0:250 1:250 A:3182635402;C:2291052382;G:2349897358;T:3514348167;N:1727191 250 250     3182635402 2291052382 2349897358 3514348167 1727191 SRX16840868 SRS14446084 SRA1468898 Max Planck Institut|Boehm Max Planck Institut 2 0.27918 0.0001 0.00045 9e-05 0.99701 1.0 0.09245   250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70852 70852 SRR20821269 SRX16840867 SRS14416088 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 1   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 1 ZF 15 1 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     ZF_1_01_R1.fastq.gz ZF_1_01_R2.fastq.gz ZF_1_02_R1.fastq.gz ZF_1_02_R2.fastq.gz ZF_1_03_R1.fastq.gz ZF_1_03_R2.fastq.gz ZF_1_04_R1.fastq.gz ZF_1_04_R2.fastq.gz ZF_1_05_R1.fastq.gz ZF_1_05_R2.fastq.gz ZF_1_06_R1.fastq.gz ZF_1_06_R2.fastq.gz ZF_1_07_R1.fastq.gz ZF_1_07_R2.fastq.gz ZF_1_08_R1.fastq.gz ZF_1_08_R2.fastq.gz ZF_1_09_R1.fastq.gz ZF_1_09_R2.fastq.gz ZF_1_10_R1.fastq.gz ZF_1_10_R2.fastq.gz ZF_1_11_R1.fastq.gz ZF_1_11_R2.fastq.gz ZF_1_12_R1.fastq.gz ZF_1_12_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 11128555000.0 22257110.0 ZF 1 01 R1.fastq.gz 0:250 1:250 A:3130611303;C:2262908040;G:2314518134;T:3418822646;N:1694877 250 250     3130611303 2262908040 2314518134 3418822646 1694877 SRX16840867 SRS14416088 SRA1468898 Max Planck Institut|Boehm Max Planck Institut 2 0.26276 0.0002 0.00063 0.00019 0.99669 1.0 0.16038   250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70853 70853 SRR20821016 SRX16840621 SRS14445862 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 5   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 5|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 5 ZF 15 5 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     Fish_5_s1_R1.fastq.gz Fish_5_s1_R2.fastq.gz Fish_5_s2_R1.fastq.gz Fish_5_s2_R2.fastq.gz Fish_5_s3_R1.fastq.gz Fish_5_s3_R2.fastq.gz Fish_5_s4_R1.fastq.gz Fish_5_s4_R2.fastq.gz Fish_5_s5_R1.fastq.gz Fish_5_s5_R2.fastq.gz Fish_5_s6_R1.fastq.gz Fish_5_s6_R2.fastq.gz Fish_5_s7_R1.fastq.gz Fish_5_s7_R2.fastq.gz Fish_5_s8_R1.fastq.gz Fish_5_s8_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 12404050000.0 24808100.0 Fish 5 s1 R1.fastq.gz 0:250 1:250 A:3320455167;C:2599567608;G:2616971343;T:3833147517;N:33908365 250 250     3320455167 2599567608 2616971343 3833147517 33908365 SRX16840621 SRS14445862 SRA1468889 Max Planck Institut|Boehm Max Planck Institut 2 0.46656 1e-05 0.00102 0.0 0.99715 1.0 0.67642   250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70854 70854 SRR20821017 SRX16840620 SRS14445861 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 4   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 4|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 4 ZF 15 4 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     Fish_4_s1_R1.fastq.gz Fish_4_s1_R2.fastq.gz Fish_4_s2_R1.fastq.gz Fish_4_s2_R2.fastq.gz Fish_4_s3_R1.fastq.gz Fish_4_s3_R2.fastq.gz Fish_4_s4_R1.fastq.gz Fish_4_s4_R2.fastq.gz Fish_4_s5_R1.fastq.gz Fish_4_s5_R2.fastq.gz Fish_4_s6_R1.fastq.gz Fish_4_s6_R2.fastq.gz Fish_4_s7_R1.fastq.gz Fish_4_s7_R2.fastq.gz Fish_4_s8_R1.fastq.gz Fish_4_s8_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 14690229000.0 29380458.0 Fish 4 s1 R1.fastq.gz 0:250 1:250 A:4100988732;C:3028728956;G:3105063955;T:4415320433;N:40126924 250 250     4100988732 3028728956 3105063955 4415320433 40126924 SRX16840620 SRS14445861 SRA1468889 Max Planck Institut|Boehm Max Planck Institut 2 0.20173 4e-05 9e-05 3e-05 0.99886 0.99997 0.02749 0.0 250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70855 70855 SRR20821018 SRX16840619 SRS14445860 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 3   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 3|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 3 ZF 15 3 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     Fish_3_s1_R1.fastq.gz Fish_3_s1_R2.fastq.gz Fish_3_s2_R1.fastq.gz Fish_3_s2_R2.fastq.gz Fish_3_s3_R1.fastq.gz Fish_3_s3_R2.fastq.gz Fish_3_s4_R1.fastq.gz Fish_3_s4_R2.fastq.gz Fish_3_s5_R1.fastq.gz Fish_3_s5_R2.fastq.gz Fish_3_s6_R1.fastq.gz Fish_3_s6_R2.fastq.gz Fish_3_s7_R1.fastq.gz Fish_3_s7_R2.fastq.gz Fish_3_s8_R1.fastq.gz Fish_3_s8_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 11142784000.0 22285568.0 Fish 3 s1 R1.fastq.gz 0:250 1:250 A:2958284498;C:2329155931;G:2358380909;T:3466617016;N:30345646 250 250     2958284498 2329155931 2358380909 3466617016 30345646 SRX16840619 SRS14445860 SRA1468889 Max Planck Institut|Boehm Max Planck Institut 2 0.56406 2e-05 0.00159 1e-05 0.99868 1.0 0.67877   250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70856 70856 SRR20821019 SRX16840618 SRS14416088 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 1   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 15 1 ZF 15 1 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP389580     Fish_1_s1_R1.fastq.gz Fish_1_s1_R2.fastq.gz Fish_1_s2_R1.fastq.gz Fish_1_s2_R2.fastq.gz Fish_1_s3_R1.fastq.gz Fish_1_s3_R2.fastq.gz Fish_1_s4_R1.fastq.gz Fish_1_s4_R2.fastq.gz Fish_1_s5_R1.fastq.gz Fish_1_s5_R2.fastq.gz Fish_1_s6_R1.fastq.gz Fish_1_s6_R2.fastq.gz Fish_1_s7_R1.fastq.gz Fish_1_s7_R2.fastq.gz Fish_1_s8_R1.fastq.gz Fish_1_s8_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 23425111500.0 46850223.0 Fish 1 s1 R1.fastq.gz 0:250 1:250 A:6539165809;C:4856848776;G:4965848496;T:6999397120;N:63851299 250 250     6539165809 4856848776 4965848496 6999397120 63851299 SRX16840618 SRS14416088 SRA1468889 Max Planck Institut|Boehm Max Planck Institut 2 0.22816 3e-05 3e-05 2e-05 0.99931 1.0 0.01795   250 250 B T mate2 technical by mapping diff illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70857 70857 SRR20774919 SRX16794795 SRS14416088 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 1   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 14 ZF 14 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389580     ZF_1_R1.fastq.gz ZF_1_R2.fastq.gz ZF_2_R1.fastq.gz ZF_2_R2.fastq.gz ZF_3_R1.fastq.gz ZF_3_R2.fastq.gz ZF_4_R1.fastq.gz ZF_4_R2.fastq.gz ZF_5_R1.fastq.gz ZF_5_R2.fastq.gz ZF_6_R1.fastq.gz ZF_6_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 2060446800.0 3434078.0 ZF 1 R1.fastq.gz 0:300 1:300 A:583057434;C:430231786;G:436041334;T:600779904;N:10336342 300 300     583057434 430231786 436041334 600779904 10336342 SRX16794795 SRS14416088 SRA1467929 Max Planck Institut|Boehm Max Planck Institut 2 0.22937 0.00332 0.00094 0.00296 0.99853 0.99977 0.07993 0.34426 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-03 Adult Adult Trunk Surface Structure
70858 70858 SRR20770403 SRX16790285 SRS14416088 SRP389580 PRJNA865512 TCR alpha and beta repseq PRJNA865512 Other TCR Repertoire sequencing raw reads TCR alpha and beta for several species   pubmed:37344590     ZF 1   strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire ZF 13 ZF 13 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389580     ZF_1_R1.fastq.gz ZF_1_R2.fastq.gz ZF_2_R1.fastq.gz ZF_2_R2.fastq.gz ZF_3_R1.fastq.gz ZF_3_R2.fastq.gz ZF_4_R1.fastq.gz ZF_4_R2.fastq.gz ZF_5_R1.fastq.gz ZF_5_R2.fastq.gz ZF_6_R1.fastq.gz ZF_6_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 404958600.0 674931.0 ZF 1 R1.fastq.gz 0:300 1:300 A:115477181;C:85168234;G:86149957;T:118163222;N:6 300 300     115477181 85168234 86149957 118163222 6 SRX16790285 SRS14416088 SRA1467850 Max Planck Institut|Boehm Max Planck Institut 2 0.22832 0.00294 0.00097 0.00267 0.9987 0.99981 0.06408 0.06382 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-03 Adult Adult Trunk Surface Structure
70865 70865 SRR21025648 SRX17041895 SRS14626477 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Cb mutant ZF ZF B1   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Cb mutant fish 1|BioSampleModel:Model organism or animal                 TCR Cbeta mutant zebrafish repertoire ZF B1 39 ZF B1 39 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_B_1_R1.fastq.gz ZF_B_1_R2.fastq.gz fastq fastq 542089800.0 903483.0 ZF B 1 R1.fastq.gz 0:300 1:300 A:135658810;C:102336162;G:99078828;T:137378936;N:67637064 300 300     135658810 102336162 99078828 137378936 67637064 SRX17041895 SRS14626477 SRA1474283 Max Planck Institut|Boehm Max Planck Institut 2 0.12189 0.0 0.00343 0.0 0.99504 1.0 0.39007   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70866 70866 SRR21025649 SRX17041894 SRS14626476 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF A3   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 3|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF A3 39 ZF A3 39 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_A_3_R1.fastq.gz ZF_A_3_R2.fastq.gz fastq fastq 308308200.0 513847.0 ZF A 3 R1.fastq.gz 0:300 1:300 A:78000370;C:58841499;G:57272527;T:75682806;N:38510998 300 300     78000370 58841499 57272527 75682806 38510998 SRX17041894 SRS14626476 SRA1474283 Max Planck Institut|Boehm Max Planck Institut 2 0.12647 0.0 0.00605 0.0 0.99492 1.0 0.53455   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70867 70867 SRR21025650 SRX17041893 SRS14626475 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF A2   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 2|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF A2 39 ZF A2 39 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_A_2_R1.fastq.gz ZF_A_2_R2.fastq.gz fastq fastq 478462200.0 797437.0 ZF A 2 R1.fastq.gz 0:300 1:300 A:121169167;C:89660025;G:88748678;T:119119069;N:59765261 300 300     121169167 89660025 88748678 119119069 59765261 SRX17041893 SRS14626475 SRA1474283 Max Planck Institut|Boehm Max Planck Institut 2 0.14904 0.0 0.00506 0.0 0.995 1.0 0.41067   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70868 70868 SRR21025651 SRX17041892 SRS14626474 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF A1   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 1|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF A1 39 ZF A1 39 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_A_1_R1.fastq.gz ZF_A_1_R2.fastq.gz fastq fastq 678536400.0 1130894.0 ZF A 1 R1.fastq.gz 0:300 1:300 A:171085705;C:127441930;G:123964513;T:171506152;N:84538100 300 300     171085705 127441930 123964513 171506152 84538100 SRX17041892 SRS14626474 SRA1474283 Max Planck Institut|Boehm Max Planck Institut 2 0.15972 0.0 0.00626 0.0 0.99358 1.0 0.41112   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70869 70869 SRR21025647 SRX17041891 SRS14626540 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF e7   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF e7 39 ZF e7 39 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP389887     ZF_E7_1_R1.fastq.gz ZF_E7_1_R2.fastq.gz ZF_E7_2_R1.fastq.gz ZF_E7_2_R2.fastq.gz ZF_E7_3_R1.fastq.gz ZF_E7_3_R2.fastq.gz ZF_E7_4_R1.fastq.gz ZF_E7_4_R2.fastq.gz ZF_E7_5_R1.fastq.gz ZF_E7_5_R2.fastq.gz ZF_E7_6_R1.fastq.gz ZF_E7_6_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 3743030974.0 7456237.0 ZF E7 1 R1.fastq.gz 0:251 1:251 A:1059538576;C:756862432;G:800743054;T:1125844134;N:42778 251 251     1059538576 756862432 800743054 1125844134 42778 SRX17041891 SRS14626540 SRA1474280 Max Planck Institut|Boehm Max Planck Institut 2 0.17475 4e-05 0.00048 3e-05 0.99606 1.0 0.06216   251 251 B T mate2 technical by mapping diff illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70870 70870 SRR21025625 SRX17041869 SRS14626540 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF e7   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF e7 37 ZF e7 37 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP389887     ZF_E7_1_R1.fastq.gz ZF_E7_1_R2.fastq.gz ZF_E7_2_R1.fastq.gz ZF_E7_2_R2.fastq.gz ZF_E7_3_R1.fastq.gz ZF_E7_3_R2.fastq.gz ZF_E7_4_R1.fastq.gz ZF_E7_4_R2.fastq.gz ZF_E7_5_R1.fastq.gz ZF_E7_5_R2.fastq.gz ZF_E7_6_R1.fastq.gz ZF_E7_6_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 6358841530.0 12667015.0 ZF E7 1 R1.fastq.gz 0:251 1:251 A:1780832978;C:1325459337;G:1324964858;T:1927430147;N:154210 251 251     1780832978 1325459337 1324964858 1927430147 154210 SRX17041869 SRS14626540 SRA1474264 Max Planck Institut|Boehm Max Planck Institut 2 0.17062 0.00202 0.00036 0.00201 0.9961 1.0 0.45331   251 251 B T mate2 technical by mapping diff illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70871 70871 SRR21025558 SRX17041805 SRS14626477 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Cb mutant ZF ZF B1   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Cb mutant fish 1|BioSampleModel:Model organism or animal                 TCR Cbeta mutant zebrafish repertoire ZF B1 37 ZF B1 37 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_B_1_R1.fastq.gz ZF_B_1_R2.fastq.gz fastq fastq 690565200.0 1150942.0 ZF B 1 R1.fastq.gz 0:300 1:300 A:190561034;C:142350146;G:136690824;T:190637972;N:30325224 300 300     190561034 142350146 136690824 190637972 30325224 SRX17041805 SRS14626477 SRA1474258 Max Planck Institut|Boehm Max Planck Institut 2 0.11811 9e-05 0.00424 4e-05 0.99472 0.99995 0.43275 0.5 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70872 70872 SRR21025559 SRX17041804 SRS14626476 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF A3   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 3|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF A3 37 ZF A3 37 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_A_3_R1.fastq.gz ZF_A_3_R2.fastq.gz fastq fastq 460708800.0 767848.0 ZF A 3 R1.fastq.gz 0:300 1:300 A:128444122;C:96066218;G:93502400;T:122577077;N:20118983 300 300     128444122 96066218 93502400 122577077 20118983 SRX17041804 SRS14626476 SRA1474258 Max Planck Institut|Boehm Max Planck Institut 2 0.12334 8e-05 0.00785 5e-05 0.99486 0.99997 0.57556 1.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70873 70873 SRR21025560 SRX17041803 SRS14626475 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF A2   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 2|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF A2 37 ZF A2 37 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_A_2_R1.fastq.gz ZF_A_2_R2.fastq.gz fastq fastq 665948400.0 1109914.0 ZF A 2 R1.fastq.gz 0:300 1:300 A:185901193;C:135612243;G:135145305;T:180035490;N:29254169 300 300     185901193 135612243 135145305 180035490 29254169 SRX17041803 SRS14626475 SRA1474258 Max Planck Institut|Boehm Max Planck Institut 2 0.14435 0.0 0.00709 0.0 0.99429 1.0 0.46577   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70874 70874 SRR21025561 SRX17041802 SRS14626474 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590   Ca mutant ZF ZF A1   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 1|BioSampleModel:Model organism or animal                 TCR Calpha mutant zebrafish repertoire ZF A1 37 ZF A1 37 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     ZF_A_1_R1.fastq.gz ZF_A_1_R2.fastq.gz fastq fastq 988403400.0 1647339.0 ZF A 1 R1.fastq.gz 0:300 1:300 A:274811390;C:202503190;G:195476681;T:272202966;N:43409173 300 300     274811390 202503190 195476681 272202966 43409173 SRX17041802 SRS14626474 SRA1474258 Max Planck Institut|Boehm Max Planck Institut 2 0.15605 0.0001 0.0075 6e-05 0.99304 0.99997 0.44452 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-12 Adult Adult Trunk Surface Structure
70875 70875 SRR20823554 SRX16843129 SRS14446944 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 8   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 8|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 8 CF 25 8 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_8i_1_R1.fastq.gz CF_8i_1_R2.fastq.gz CF_8i_2_R1.fastq.gz CF_8i_2_R2.fastq.gz CF_8i_3_R1.fastq.gz CF_8i_3_R2.fastq.gz CF_8i_4_R1.fastq.gz CF_8i_4_R2.fastq.gz CF_8ii_1_R1.fastq.gz CF_8ii_1_R2.fastq.gz CF_8ii_2_R1.fastq.gz CF_8ii_2_R2.fastq.gz CF_8ii_3_R1.fastq.gz CF_8ii_3_R2.fastq.gz CF_8ii_4_R1.fastq.gz CF_8ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 353982600.0 589971.0 CF 8i 1 R1.fastq.gz 0:300 1:300 A:95337236;C:72187591;G:66351347;T:119978210;N:128216 300 300     95337236 72187591 66351347 119978210 128216 SRX16843129 SRS14446944 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.15841 0.00021 0.00079 0.00015 0.99961 0.99995 0.44832 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70876 70876 SRR20823555 SRX16843128 SRS14446943 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 7   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 7|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 7 CF 25 7 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_7i_1_R1.fastq.gz CF_7i_1_R2.fastq.gz CF_7i_2_R1.fastq.gz CF_7i_2_R2.fastq.gz CF_7i_3_R1.fastq.gz CF_7i_3_R2.fastq.gz CF_7i_4_R1.fastq.gz CF_7i_4_R2.fastq.gz CF_7ii_1_R1.fastq.gz CF_7ii_1_R2.fastq.gz CF_7ii_2_R1.fastq.gz CF_7ii_2_R2.fastq.gz CF_7ii_3_R1.fastq.gz CF_7ii_3_R2.fastq.gz CF_7ii_4_R1.fastq.gz CF_7ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 1747909200.0 2913182.0 CF 7i 1 R1.fastq.gz 0:300 1:300 A:483225545;C:364529202;G:366375323;T:532231673;N:1547457 300 300     483225545 364529202 366375323 532231673 1547457 SRX16843128 SRS14446943 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.11826 4e-05 0.00019 3e-05 0.99939 1.0 0.0663   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70877 70877 SRR20823556 SRX16843127 SRS14446942 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 6   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 6|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 6 CF 25 6 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_6i_1_R1.fastq.gz CF_6i_1_R2.fastq.gz CF_6i_2_R1.fastq.gz CF_6i_2_R2.fastq.gz CF_6i_3_R1.fastq.gz CF_6i_3_R2.fastq.gz CF_6i_4_R1.fastq.gz CF_6i_4_R2.fastq.gz CF_6ii_1_R1.fastq.gz CF_6ii_1_R2.fastq.gz CF_6ii_2_R1.fastq.gz CF_6ii_2_R2.fastq.gz CF_6ii_3_R1.fastq.gz CF_6ii_3_R2.fastq.gz CF_6ii_4_R1.fastq.gz CF_6ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 2113688400.0 3522814.0 CF 6i 1 R1.fastq.gz 0:300 1:300 A:584272199;C:441403541;G:441691655;T:644543652;N:1777353 300 300     584272199 441403541 441691655 644543652 1777353 SRX16843127 SRS14446942 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.11642 4e-05 0.00012 1e-05 0.99955 0.99997 0.05908 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70878 70878 SRR20823557 SRX16843126 SRS14446941 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 5   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 5|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 5 CF 25 5 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_5i_1_R1.fastq.gz CF_5i_1_R2.fastq.gz CF_5i_2_R1.fastq.gz CF_5i_2_R2.fastq.gz CF_5i_3_R1.fastq.gz CF_5i_3_R2.fastq.gz CF_5i_4_R1.fastq.gz CF_5i_4_R2.fastq.gz CF_5ii_1_R1.fastq.gz CF_5ii_1_R2.fastq.gz CF_5ii_2_R1.fastq.gz CF_5ii_2_R2.fastq.gz CF_5ii_3_R1.fastq.gz CF_5ii_3_R2.fastq.gz CF_5ii_4_R1.fastq.gz CF_5ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 1563231600.0 2605386.0 CF 5i 1 R1.fastq.gz 0:300 1:300 A:431285088;C:326876454;G:326380744;T:477247162;N:1442152 300 300     431285088 326876454 326380744 477247162 1442152 SRX16843126 SRS14446941 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.11826 4e-05 0.00024 2e-05 0.99928 0.99997 0.20833 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70879 70879 SRR20823558 SRX16843125 SRS14446939 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 4   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 4|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 4 CF 25 4 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_4i_1_R1.fastq.gz CF_4i_1_R2.fastq.gz CF_4i_2_R1.fastq.gz CF_4i_2_R2.fastq.gz CF_4i_3_R1.fastq.gz CF_4i_3_R2.fastq.gz CF_4i_4_R1.fastq.gz CF_4i_4_R2.fastq.gz CF_4ii_1_R1.fastq.gz CF_4ii_1_R2.fastq.gz CF_4ii_2_R1.fastq.gz CF_4ii_2_R2.fastq.gz CF_4ii_3_R1.fastq.gz CF_4ii_3_R2.fastq.gz CF_4ii_4_R1.fastq.gz CF_4ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 2110654800.0 3517758.0 CF 4i 1 R1.fastq.gz 0:300 1:300 A:583907147;C:441977681;G:442168609;T:640843429;N:1757934 300 300     583907147 441977681 442168609 640843429 1757934 SRX16843125 SRS14446939 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.09992 3e-05 0.00029 2e-05 0.99922 1.0 0.06198   300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70880 70880 SRR20823559 SRX16843124 SRS14446940 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 3   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 3|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 3 CF 25 3 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_3i_1_R1.fastq.gz CF_3i_1_R2.fastq.gz CF_3i_2_R1.fastq.gz CF_3i_2_R2.fastq.gz CF_3i_3_R1.fastq.gz CF_3i_3_R2.fastq.gz CF_3i_4_R1.fastq.gz CF_3i_4_R2.fastq.gz CF_3ii_1_R1.fastq.gz CF_3ii_1_R2.fastq.gz CF_3ii_2_R1.fastq.gz CF_3ii_2_R2.fastq.gz CF_3ii_3_R1.fastq.gz CF_3ii_3_R2.fastq.gz CF_3ii_4_R1.fastq.gz CF_3ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 1358656200.0 2264427.0 CF 3i 1 R1.fastq.gz 0:300 1:300 A:373530868;C:285820823;G:282903019;T:415201895;N:1199595 300 300     373530868 285820823 282903019 415201895 1199595 SRX16843124 SRS14446940 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.13469 7e-05 0.00024 4e-05 0.9992 0.99997 0.09944 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70881 70881 SRR20823560 SRX16843123 SRS14446938 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 2   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 2|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 2 CF 25 2 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_1_2ii_5_R1.fastq.gz CF_1_2ii_5_R2.fastq.gz CF_1_2ii_6_R1.fastq.gz CF_1_2ii_6_R2.fastq.gz CF_1_2ii_7_R1.fastq.gz CF_1_2ii_7_R2.fastq.gz CF_1_2ii_8_R1.fastq.gz CF_1_2ii_8_R2.fastq.gz CF_2i_1_R1.fastq.gz CF_2i_1_R2.fastq.gz CF_2i_2_R1.fastq.gz CF_2i_2_R2.fastq.gz CF_2i_3_R1.fastq.gz CF_2i_3_R2.fastq.gz CF_2i_4_R1.fastq.gz CF_2i_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 1017871200.0 1696452.0 CF 1 2ii 5 R1.fastq.gz 0:300 1:300 A:281361148;C:213220413;G:212347028;T:310111745;N:830866 300 300     281361148 213220413 212347028 310111745 830866 SRX16843123 SRS14446938 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.13088 5e-05 0.00029 3e-05 0.99949 0.99997 0.11499 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70882 70882 SRR20823561 SRX16843122 SRS14446937 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 1   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 25 1 CF 25 1 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_1_2ii_1_R1.fastq.gz CF_1_2ii_1_R2.fastq.gz CF_1_2ii_2_R1.fastq.gz CF_1_2ii_2_R2.fastq.gz CF_1_2ii_3_R1.fastq.gz CF_1_2ii_3_R2.fastq.gz CF_1_2ii_4_R1.fastq.gz CF_1_2ii_4_R2.fastq.gz CF_1i_1_R1.fastq.gz CF_1i_1_R2.fastq.gz CF_1i_2_R1.fastq.gz CF_1i_2_R2.fastq.gz CF_1i_3_R1.fastq.gz CF_1i_3_R2.fastq.gz CF_1i_4_R1.fastq.gz CF_1i_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 725888400.0 1209814.0 CF 1 2ii 1 R1.fastq.gz 0:300 1:300 A:200725177;C:151940953;G:151616803;T:220966635;N:638832 300 300     200725177 151940953 151616803 220966635 638832 SRX16843122 SRS14446937 SRA1468943 Max Planck Institut|Boehm Max Planck Institut 2 0.12857 4e-05 0.0002 2e-05 0.99937 0.99995 0.05962 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70883 70883 SRR20822140 SRX16841749 SRS14446944 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 8   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 8|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 8 CF 23 8 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_8i_1_R1.fastq.gz CF_8i_1_R2.fastq.gz CF_8i_2_R1.fastq.gz CF_8i_2_R2.fastq.gz CF_8i_3_R1.fastq.gz CF_8i_3_R2.fastq.gz CF_8i_4_R1.fastq.gz CF_8i_4_R2.fastq.gz CF_8ii_1_R1.fastq.gz CF_8ii_1_R2.fastq.gz CF_8ii_2_R1.fastq.gz CF_8ii_2_R2.fastq.gz CF_8ii_3_R1.fastq.gz CF_8ii_3_R2.fastq.gz CF_8ii_4_R1.fastq.gz CF_8ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 992400.0 1654.0 CF 8i 1 R1.fastq.gz 0:300 1:300 A:268792;C:212596;G:195943;T:315027;N:42 300 300     268792 212596 195943 315027 42 SRX16841749 SRS14446944 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.15462 0.04181 0.0 0.03858 0.99995 0.99997 0.62809 0.0 300 300 B T mate2 technical by mapping diff illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70884 70884 SRR20822141 SRX16841748 SRS14446943 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 7   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 7|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 7 CF 23 7 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_7i_1_R1.fastq.gz CF_7i_1_R2.fastq.gz CF_7i_2_R1.fastq.gz CF_7i_2_R2.fastq.gz CF_7i_3_R1.fastq.gz CF_7i_3_R2.fastq.gz CF_7i_4_R1.fastq.gz CF_7i_4_R2.fastq.gz CF_7ii_1_R1.fastq.gz CF_7ii_1_R2.fastq.gz CF_7ii_2_R1.fastq.gz CF_7ii_2_R2.fastq.gz CF_7ii_3_R1.fastq.gz CF_7ii_3_R2.fastq.gz CF_7ii_4_R1.fastq.gz CF_7ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 90294000.0 150490.0 CF 7i 1 R1.fastq.gz 0:300 1:300 A:24528989;C:19392684;G:18743775;T:27623730;N:4822 300 300     24528989 19392684 18743775 27623730 4822 SRX16841748 SRS14446943 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.07466 2e-05 0.00014 1e-05 0.99979 1.0 0.07443   300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70885 70885 SRR20822142 SRX16841747 SRS14446942 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 6   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 6|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 6 CF 23 6 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_6i_1_R1.fastq.gz CF_6i_1_R2.fastq.gz CF_6i_2_R1.fastq.gz CF_6i_2_R2.fastq.gz CF_6i_3_R1.fastq.gz CF_6i_3_R2.fastq.gz CF_6i_4_R1.fastq.gz CF_6i_4_R2.fastq.gz CF_6ii_1_R1.fastq.gz CF_6ii_1_R2.fastq.gz CF_6ii_2_R1.fastq.gz CF_6ii_2_R2.fastq.gz CF_6ii_3_R1.fastq.gz CF_6ii_3_R2.fastq.gz CF_6ii_4_R1.fastq.gz CF_6ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 88349400.0 147249.0 CF 6i 1 R1.fastq.gz 0:300 1:300 A:23979442;C:18990541;G:18286837;T:27088540;N:4040 300 300     23979442 18990541 18286837 27088540 4040 SRX16841747 SRS14446942 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.07 1e-05 0.00013 0.0 0.99967 1.0 0.08186   300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70886 70886 SRR20822143 SRX16841746 SRS14446941 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 5   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 5|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 5 CF 23 5 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_5i_1_R1.fastq.gz CF_5i_1_R2.fastq.gz CF_5i_2_R1.fastq.gz CF_5i_2_R2.fastq.gz CF_5i_3_R1.fastq.gz CF_5i_3_R2.fastq.gz CF_5i_4_R1.fastq.gz CF_5i_4_R2.fastq.gz CF_5ii_1_R1.fastq.gz CF_5ii_1_R2.fastq.gz CF_5ii_2_R1.fastq.gz CF_5ii_2_R2.fastq.gz CF_5ii_3_R1.fastq.gz CF_5ii_3_R2.fastq.gz CF_5ii_4_R1.fastq.gz CF_5ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 64482600.0 107471.0 CF 5i 1 R1.fastq.gz 0:300 1:300 A:17454099;C:13879333;G:13325003;T:19821371;N:2794 300 300     17454099 13879333 13325003 19821371 2794 SRX16841746 SRS14446941 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.06999 4e-05 0.00066 3e-05 0.99971 1.0 0.34418   300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70887 70887 SRR20822144 SRX16841745 SRS14446939 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 4   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 4|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 4 CF 23 4 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_4i_1_R1.fastq.gz CF_4i_1_R2.fastq.gz CF_4i_2_R1.fastq.gz CF_4i_2_R2.fastq.gz CF_4i_3_R1.fastq.gz CF_4i_3_R2.fastq.gz CF_4i_4_R1.fastq.gz CF_4i_4_R2.fastq.gz CF_4ii_1_R1.fastq.gz CF_4ii_1_R2.fastq.gz CF_4ii_2_R1.fastq.gz CF_4ii_2_R2.fastq.gz CF_4ii_3_R1.fastq.gz CF_4ii_3_R2.fastq.gz CF_4ii_4_R1.fastq.gz CF_4ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 89868600.0 149781.0 CF 4i 1 R1.fastq.gz 0:300 1:300 A:24387218;C:19355528;G:18593888;T:27527119;N:4847 300 300     24387218 19355528 18593888 27527119 4847 SRX16841745 SRS14446939 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.04754 1e-05 0.00033 0.0 0.99939 1.0 0.10674   300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70888 70888 SRR20822145 SRX16841744 SRS14446940 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 3   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 3|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 3 CF 23 3 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_3i_1_R1.fastq.gz CF_3i_1_R2.fastq.gz CF_3i_2_R1.fastq.gz CF_3i_2_R2.fastq.gz CF_3i_3_R1.fastq.gz CF_3i_3_R2.fastq.gz CF_3i_4_R1.fastq.gz CF_3i_4_R2.fastq.gz CF_3ii_1_R1.fastq.gz CF_3ii_1_R2.fastq.gz CF_3ii_2_R1.fastq.gz CF_3ii_2_R2.fastq.gz CF_3ii_3_R1.fastq.gz CF_3ii_3_R2.fastq.gz CF_3ii_4_R1.fastq.gz CF_3ii_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 57636000.0 96060.0 CF 3i 1 R1.fastq.gz 0:300 1:300 A:15535821;C:12511228;G:11909225;T:17677153;N:2573 300 300     15535821 12511228 11909225 17677153 2573 SRX16841744 SRS14446940 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.08313 3e-05 0.00034 1e-05 0.99979 0.99997 0.14815 0.0 300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70889 70889 SRR20822146 SRX16841743 SRS14446938 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 2   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 2|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 2 CF 23 2 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_1_2ii_5_R1.fastq.gz CF_1_2ii_5_R2.fastq.gz CF_1_2ii_6_R1.fastq.gz CF_1_2ii_6_R2.fastq.gz CF_1_2ii_7_R1.fastq.gz CF_1_2ii_7_R2.fastq.gz CF_1_2ii_8_R1.fastq.gz CF_1_2ii_8_R2.fastq.gz CF_2i_1_R1.fastq.gz CF_2i_1_R2.fastq.gz CF_2i_2_R1.fastq.gz CF_2i_2_R2.fastq.gz CF_2i_3_R1.fastq.gz CF_2i_3_R2.fastq.gz CF_2i_4_R1.fastq.gz CF_2i_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 45198000.0 75330.0 CF 1 2ii 5 R1.fastq.gz 0:300 1:300 A:12248161;C:9753570;G:9327745;T:13866741;N:1783 300 300     12248161 9753570 9327745 13866741 1783 SRX16841743 SRS14446938 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.07225 0.0 0.00046 0.0 0.99981 1.0 0.19253   300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure
70890 70890 SRR20822147 SRX16841742 SRS14446937 SRP389887 PRJNA865921 Zebrafish mutant TCR alpha and beta lines PRJNA865921 Other Cas9 generated TCR alpha or beta Zebrafish lines   pubmed:37344590     CF 1   strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal                 TCRab zebrafish repertoire CF 23 1 CF 23 1 Repertoire amplification from cDNA with C specific primers for TCRa and TCRb     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiSeq   SRP389887     CF_1_2ii_1_R1.fastq.gz CF_1_2ii_1_R2.fastq.gz CF_1_2ii_2_R1.fastq.gz CF_1_2ii_2_R2.fastq.gz CF_1_2ii_3_R1.fastq.gz CF_1_2ii_3_R2.fastq.gz CF_1_2ii_4_R1.fastq.gz CF_1_2ii_4_R2.fastq.gz CF_1i_1_R1.fastq.gz CF_1i_1_R2.fastq.gz CF_1i_2_R1.fastq.gz CF_1i_2_R2.fastq.gz CF_1i_3_R1.fastq.gz CF_1i_3_R2.fastq.gz CF_1i_4_R1.fastq.gz CF_1i_4_R2.fastq.gz fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq 33274200.0 55457.0 CF 1 2ii 1 R1.fastq.gz 0:300 1:300 A:9021097;C:7171844;G:6860950;T:10218627;N:1682 300 300     9021097 7171844 6860950 10218627 1682 SRX16841742 SRS14446937 SRA1468924 Max Planck Institut|Boehm Max Planck Institut 2 0.06705 3e-05 0.00012 2e-05 0.99987 1.0 0.11281   300 300 T T mates < 9% mapping rate illumina miseq unknown random_priming unknown bulk unknown unknown   Germany 2022-08-04 Adult Adult Trunk Surface Structure

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;