run_metadata
6,447 rows where experiment.library_source = "TRANSCRIPTOMIC" and tissue_curation_coarse = "Nervous System"
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| Link | rowid ▼ | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38 | 38 | DRR408248 | DRX393854 | DRS407179 | DRP012042 | PRJDB14275 | Zebrafish EN/ENCDC RNA seq | DRP012042 | Transcriptome Analysis | A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs and isolated GFP+ ENs and dsRed+ ENCDCs. Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit. | zebrafish 5 day DsRed positive enteric neural crest derived cells replicate 3 | zebrafish ENCDC replicate 3 | SAMD00529468 | sample name:zebrafish ENCDC replicate 3|biological replicate:enteric neural crest derived cells 3|strain:Tgsox10:cre; EF3alpha:loxP gfp loxP dsred | NextSeq 550 paired end sequencing of SAMD00529468 | DRX393854 | 190326ENvsNC N706 5day;NeuralCrestDerivedCell;rep3 | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | NextSeq 550 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP012042 | NextSeq 550 paired end sequencing of SAMD00529468 | 3803721121.0 | 24526633.0 | DRR408248 | 0:77.54 1:77.54 | A:999106107;C:897663781;G:921501114;T:979486853;N:5963266 | 77 | 77 | 999106107 | 897663781 | 921501114 | 979486853 | 5963266 | DRX393854 | DRS407179 | DRA014886 | NIBB|NIBB core research facilities, National Institute for Basic Biology | University of Hyogo | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Japan | 2024-09-22 | Undetermined | Larval | Brain | Nervous System | |||||||||||||||||||||||||||||
| 39 | 39 | DRR408247 | DRX393853 | DRS407178 | DRP012042 | PRJDB14275 | Zebrafish EN/ENCDC RNA seq | DRP012042 | Transcriptome Analysis | A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs and isolated GFP+ ENs and dsRed+ ENCDCs. Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit. | zebrafish 5 day DsRed positive enteric neural crest derived cells replicate 2 | zebrafish ENCDC replicate 2 | SAMD00529467 | sample name:zebrafish ENCDC replicate 2|biological replicate:enteric neural crest derived cells 2|strain:Tgsox10:cre; EF2alpha:loxP gfp loxP dsred | NextSeq 550 paired end sequencing of SAMD00529467 | DRX393853 | 190326ENvsNC N705 5day;NeuralCrestDerivedCell;rep2 | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | NextSeq 550 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP012042 | NextSeq 550 paired end sequencing of SAMD00529467 | 3436798274.0 | 22156202.0 | DRR408247 | 0:77.56 1:77.56 | A:900848174;C:812031426;G:832960423;T:885671203;N:5287048 | 77 | 77 | 900848174 | 812031426 | 832960423 | 885671203 | 5287048 | DRX393853 | DRS407178 | DRA014886 | NIBB|NIBB core research facilities, National Institute for Basic Biology | University of Hyogo | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Japan | 2024-09-22 | Undetermined | Larval | Brain | Nervous System | |||||||||||||||||||||||||||||
| 40 | 40 | DRR408246 | DRX393852 | DRS407177 | DRP012042 | PRJDB14275 | Zebrafish EN/ENCDC RNA seq | DRP012042 | Transcriptome Analysis | A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs and isolated GFP+ ENs and dsRed+ ENCDCs. Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit. | zebrafish 5 day DsRed positive enteric neural crest derived cells replicate 1 | zebrafish ENCDC replicate 1 | SAMD00529466 | sample name:zebrafish ENCDC replicate 1|biological replicate:enteric neural crest derived cells 1|strain:Tgsox10:cre; EF1alpha:loxP gfp loxP dsred | NextSeq 550 paired end sequencing of SAMD00529466 | DRX393852 | 190326ENvsNC N704 5day;NeuralCrestDerivedCell;rep1 | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | NextSeq 550 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP012042 | NextSeq 550 paired end sequencing of SAMD00529466 | 3582073512.0 | 23135170.0 | DRR408246 | 0:77.41 1:77.42 | A:943152815;C:841972211;G:863627245;T:927361159;N:5960082 | 77 | 77 | 943152815 | 841972211 | 863627245 | 927361159 | 5960082 | DRX393852 | DRS407177 | DRA014886 | NIBB|NIBB core research facilities, National Institute for Basic Biology | University of Hyogo | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Japan | 2024-09-22 | Undetermined | Larval | Brain | Nervous System | |||||||||||||||||||||||||||||
| 44 | 44 | DRR668250 | DRX648352 | DRS458865 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish 2 weeks post spinal cord injury replicate 3 | Zebrafish 2wpi 3 | SAMD00799623 | sample name:Zebrafish 2wpi 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 25|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799623 | DRX648352 | RNA seq of spinal cord in zebrafish at 2wpi injured 3 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799623 | 14782516800.0 | 73912584.0 | DRR668250 | 0:100 1:100 | A:4058090278;C:3335994894;G:3323563782;T:4062467903;N:2399943 | 100 | 100 | 4058090278 | 3335994894 | 3323563782 | 4062467903 | 2399943 | DRX648352 | DRS458865 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System | |||||||||||||||||||||||||||||
| 45 | 45 | DRR668249 | DRX648351 | DRS458864 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish 2 weeks post spinal cord injury replicate 2 | Zebrafish 2wpi 2 | SAMD00799622 | sample name:Zebrafish 2wpi 2|biological replicate:2|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 14|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799622 | DRX648351 | RNA seq of spinal cord in zebrafish at 2wpi injured 2 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799622 | 13687641800.0 | 68438209.0 | DRR668249 | 0:100 1:100 | A:3759784620;C:3087398782;G:3083881581;T:3754378915;N:2197902 | 100 | 100 | 3759784620 | 3087398782 | 3083881581 | 3754378915 | 2197902 | DRX648351 | DRS458864 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System | |||||||||||||||||||||||||||||
| 46 | 46 | DRR668248 | DRX648350 | DRS458863 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish 2 weeks post spinal cord injury replicate 1 | Zebrafish 2wpi 1 | SAMD00799621 | sample name:Zebrafish 2wpi 1|biological replicate:1|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 14|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799621 | DRX648350 | RNA seq of spinal cord in zebrafish at 2wpi injured 1 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799621 | 16376197200.0 | 81880986.0 | DRR668248 | 0:100 1:100 | A:4485868844;C:3700974430;G:3710833937;T:4475827800;N:2692189 | 100 | 100 | 4485868844 | 3700974430 | 3710833937 | 4475827800 | 2692189 | DRX648350 | DRS458863 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System | |||||||||||||||||||||||||||||
| 47 | 47 | DRR668247 | DRX648349 | DRS458862 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish Intact biological replicate 3 | Zebrafish Control 3 | SAMD00799620 | sample name:Zebrafish Control 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799620 | DRX648349 | RNA seq of spinal cord in zebrafish at 0wpi control 3 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799620 | 13377538600.0 | 66887693.0 | DRR668247 | 0:100 1:100 | A:3725064764;C:2973653932;G:2980883214;T:3695767890;N:2168800 | 100 | 100 | 3725064764 | 2973653932 | 2980883214 | 3695767890 | 2168800 | DRX648349 | DRS458862 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System | |||||||||||||||||||||||||||||
| 48 | 48 | DRR668246 | DRX648348 | DRS458861 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish Intact biological replicate 2 | Zebrafish Control 2 | SAMD00799619 | sample name:Zebrafish Control 2|biological replicate:2|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799619 | DRX648348 | RNA seq of spinal cord in zebrafish at 0wpi control 2 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799619 | 14971411400.0 | 74857057.0 | DRR668246 | 0:100 1:100 | A:4160326445;C:3329083037;G:3329123314;T:4150453700;N:2424904 | 100 | 100 | 4160326445 | 3329083037 | 3329123314 | 4150453700 | 2424904 | DRX648348 | DRS458861 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System | |||||||||||||||||||||||||||||
| 49 | 49 | DRR668245 | DRX648347 | DRS458860 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish Intact biological replicate 1 | Zebrafish Control 1 | SAMD00799618 | sample name:Zebrafish Control 1|biological replicate:1|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2024 05 04|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799618 | DRX648347 | RNA seq of spinal cord in zebrafish at 0wpi control 1 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799618 | 13912523800.0 | 69562619.0 | DRR668245 | 0:100 1:100 | A:3888902049;C:3079617959;G:3075111814;T:3866655202;N:2236776 | 100 | 100 | 3888902049 | 3079617959 | 3075111814 | 3866655202 | 2236776 | DRX648347 | DRS458860 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System | |||||||||||||||||||||||||||||
| 101 | 101 | DRR189403 | DRX179868 | DRS200418 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 30 min post test session of 2 weeks memory test in non trace 2 Way Active Avoidance coditioning 3 | SAMD00182246 | sample name:CSUS Tel 30 2w memory 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182246 | DRX179868 | CSUS Tel 30 2w memory 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182246 | 2791119960.0 | 77531110.0 | DRR189403 | 0:36 | A:685050951;C:641519684;G:664655385;T:799677669;N:216271 | 36 | 685050951 | 641519684 | 664655385 | 799677669 | 216271 | DRX179868 | DRS200418 | DRA008865 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89653 | 0.1773 | 0.70725 | 0.49873 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Larval | Larval | Brain | Nervous System | ||||||||||||||||||||||||||
| 102 | 102 | DRR189402 | DRX179867 | DRS200417 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 30 min post test session of 2 weeks memory test in non trace 2 Way Active Avoidance coditioning 2 | SAMD00182245 | sample name:CSUS Tel 30 2w memory 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182245 | DRX179867 | CSUS Tel 30 2w memory 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182245 | 1505449224.0 | 41818034.0 | DRR189402 | 0:36 | A:369895057;C:346914787;G:358624651;T:429897489;N:117240 | 36 | 369895057 | 346914787 | 358624651 | 429897489 | 117240 | DRX179867 | DRS200417 | DRA008865 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89514 | 0.17677 | 0.7025 | 0.49571 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Larval | Larval | Brain | Nervous System | ||||||||||||||||||||||||||
| 103 | 103 | DRR189401 | DRX179866 | DRS200416 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 30 min post test session of 2 weeks memory test in non trace 2 Way Active Avoidance coditioning 1 | SAMD00182244 | sample name:CSUS Tel 30 2w memory 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182244 | DRX179866 | CSUS Tel 30 2w memory 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182244 | 2088507024.0 | 58014084.0 | DRR189401 | 0:36 | A:516255405;C:478036869;G:496415722;T:597637091;N:161937 | 36 | 516255405 | 478036869 | 496415722 | 597637091 | 161937 | DRX179866 | DRS200416 | DRA008865 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89533 | 0.18553 | 0.70981 | 0.49554 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Larval | Larval | Brain | Nervous System | ||||||||||||||||||||||||||
| 104 | 104 | DRR189400 | DRX179865 | DRS200401 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 30 min post test session of 1 day memory test in non trace 2 Way Active Avoidance coditioning 3 | SAMD00182243 | sample name:CSUS Tel 30 1d memory 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182243 | DRX179865 | CSUS Tel 30 1d memory 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182243 | 1340808120.0 | 37244670.0 | DRR189400 | 0:36 | A:330513975;C:306935584;G:320089399;T:383165274;N:103888 | 36 | 330513975 | 306935584 | 320089399 | 383165274 | 103888 | DRX179865 | DRS200401 | DRA008864 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89272 | 0.19494 | 0.70335 | 0.49456 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 105 | 105 | DRR189399 | DRX179864 | DRS200400 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 30 min post test session of 1 day memory test in non trace 2 Way Active Avoidance coditioning 2 | SAMD00182242 | sample name:CSUS Tel 30 1d memory 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182242 | DRX179864 | CSUS Tel 30 1d memory 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182242 | 1279740096.0 | 35548336.0 | DRR189399 | 0:36 | A:314850837;C:294188093;G:304654881;T:365946483;N:99802 | 36 | 314850837 | 294188093 | 304654881 | 365946483 | 99802 | DRX179864 | DRS200400 | DRA008864 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89485 | 0.18205 | 0.70593 | 0.49333 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 106 | 106 | DRR189398 | DRX179863 | DRS200399 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 30 min post test session of 1 day memory test in non trace 2 Way Active Avoidance coditioning 1 | SAMD00182241 | sample name:CSUS Tel 30 1d memory 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182241 | DRX179863 | CSUS Tel 30 1d memory 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182241 | 3012353100.0 | 83676475.0 | DRR189398 | 0:36 | A:740795057;C:693120664;G:717419185;T:860784745;N:233449 | 36 | 740795057 | 693120664 | 717419185 | 860784745 | 233449 | DRX179863 | DRS200399 | DRA008864 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89676 | 0.1791 | 0.70569 | 0.49835 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 107 | 107 | DRR189397 | DRX179862 | DRS200428 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 3 | SAMD00182240 | sample name:Cont Tel 60 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182240 | DRX179862 | Cont Tel 60 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182240 | 5590147750.0 | 111802955.0 | DRR189397 | 0:50 | A:1365131560;C:1269631295;G:1366791321;T:1588422020;N:171554 | 50 | 1365131560 | 1269631295 | 1366791321 | 1588422020 | 171554 | DRX179862 | DRS200428 | DRA008863 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89334 | 0.16354 | 0.7011 | 0.49383 | 50 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 108 | 108 | DRR189396 | DRX179861 | DRS200427 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 2 | SAMD00182239 | sample name:Cont Tel 60 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182239 | DRX179861 | Cont Tel 60 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182239 | 6429019650.0 | 128580393.0 | DRR189396 | 0:50 | A:1570141412;C:1457539089;G:1572785681;T:1828358007;N:195461 | 50 | 1570141412 | 1457539089 | 1572785681 | 1828358007 | 195461 | DRX179861 | DRS200427 | DRA008863 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89595 | 0.16204 | 0.70743 | 0.49805 | 50 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 109 | 109 | DRR189395 | DRX179860 | DRS200426 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 1 | SAMD00182238 | sample name:Cont Tel 60 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182238 | DRX179860 | Cont Tel 60 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182238 | 6644185850.0 | 132883717.0 | DRR189395 | 0:50 | A:1637322491;C:1498943556;G:1616212676;T:1891505597;N:201530 | 50 | 1637322491 | 1498943556 | 1616212676 | 1891505597 | 201530 | DRX179860 | DRS200426 | DRA008863 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89573 | 0.16421 | 0.7037 | 0.49805 | 50 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 110 | 110 | DRR189394 | DRX179859 | DRS200407 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post light stimulation in the conditioning tank 3 | SAMD00182237 | sample name:CS Tel 60 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182237 | DRX179859 | CS Tel 60 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182237 | 1387078956.0 | 38529971.0 | DRR189394 | 0:36 | A:333990578;C:315361737;G:337599372;T:400057968;N:69301 | 36 | 333990578 | 315361737 | 337599372 | 400057968 | 69301 | DRX179859 | DRS200407 | DRA008862 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.88133 | 0.18418 | 0.70747 | 0.4971 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 111 | 111 | DRR189393 | DRX179858 | DRS200406 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post light stimulation in the conditioning tank 2 | SAMD00182236 | sample name:CS Tel 60 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182236 | DRX179858 | CS Tel 60 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182236 | 537029424.0 | 14917484.0 | DRR189393 | 0:36 | A:127421487;C:122494467;G:132164579;T:154921150;N:27741 | 36 | 127421487 | 122494467 | 132164579 | 154921150 | 27741 | DRX179858 | DRS200406 | DRA008862 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.88264 | 0.17793 | 0.7083 | 0.49123 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 112 | 112 | DRR189392 | DRX179857 | DRS200405 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post light stimulation in the conditioning tank 1 | SAMD00182235 | sample name:CS Tel 60 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182235 | DRX179857 | CS Tel 60 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182235 | 3163663656.0 | 87879546.0 | DRR189392 | 0:36 | A:766146692;C:714108562;G:771785405;T:911468887;N:154110 | 36 | 766146692 | 714108562 | 771785405 | 911468887 | 154110 | DRX179857 | DRS200405 | DRA008862 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.88114 | 0.1803 | 0.7052 | 0.4917 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 113 | 113 | DRR189391 | DRX179856 | DRS200404 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 3 | SAMD00182234 | sample name:US Tel 60 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182234 | DRX179856 | US Tel 60 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182234 | 1535884704.0 | 42663464.0 | DRR189391 | 0:36 | A:367444721;C:350978310;G:375524359;T:441859454;N:77860 | 36 | 367444721 | 350978310 | 375524359 | 441859454 | 77860 | DRX179856 | DRS200404 | DRA008861 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.88103 | 0.1788 | 0.7082 | 0.49462 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 114 | 114 | DRR189390 | DRX179855 | DRS200403 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 2 | SAMD00182233 | sample name:US Tel 60 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182233 | DRX179855 | US Tel 60 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182233 | 737309916.0 | 20480831.0 | DRR189390 | 0:36 | A:176982713;C:168284406;G:179343270;T:212662841;N:36686 | 36 | 176982713 | 168284406 | 179343270 | 212662841 | 36686 | DRX179855 | DRS200403 | DRA008861 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.87995 | 0.18515 | 0.70816 | 0.49393 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 115 | 115 | DRR189389 | DRX179854 | DRS200402 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 1 | SAMD00182232 | sample name:US Tel 60 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182232 | DRX179854 | US Tel 60 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182232 | 595837404.0 | 16551039.0 | DRR189389 | 0:36 | A:143956004;C:134783754;G:145443580;T:171624939;N:29127 | 36 | 143956004 | 134783754 | 145443580 | 171624939 | 29127 | DRX179854 | DRS200402 | DRA008861 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.87682 | 0.18328 | 0.70309 | 0.49081 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 116 | 116 | DRR189388 | DRX179853 | DRS200452 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post light and electrical shock association in non trace 2 Way Active Avoidance coditioning 3 | SAMD00182231 | sample name:CSUS Tel 60 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182231 | DRX179853 | CSUS Tel 60 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182231 | 608050044.0 | 16890279.0 | DRR189388 | 0:36 | A:145025778;C:137906052;G:149542672;T:175545338;N:30204 | 36 | 145025778 | 137906052 | 149542672 | 175545338 | 30204 | DRX179853 | DRS200452 | DRA008860 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.87983 | 0.18602 | 0.70445 | 0.49195 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 117 | 117 | DRR189387 | DRX179852 | DRS200451 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post light and electrical shock association in non trace 2 Way Active Avoidance coditioning 2 | SAMD00182230 | sample name:CSUS Tel 60 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182230 | DRX179852 | CSUS Tel 60 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182230 | 777589452.0 | 21599707.0 | DRR189387 | 0:36 | A:185463269;C:177742981;G:190443063;T:223900096;N:40043 | 36 | 185463269 | 177742981 | 190443063 | 223900096 | 40043 | DRX179852 | DRS200451 | DRA008860 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.88331 | 0.17918 | 0.70516 | 0.48956 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 118 | 118 | DRR189386 | DRX179851 | DRS200450 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish 60 min post light and electrical shock association in non trace 2 Way Active Avoidance coditioning 1 | SAMD00182229 | sample name:CSUS Tel 60 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182229 | DRX179851 | CSUS Tel 60 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182229 | 2738622348.0 | 76072843.0 | DRR189386 | 0:36 | A:662989485;C:622023190;G:663013857;T:790459930;N:135886 | 36 | 662989485 | 622023190 | 663013857 | 790459930 | 135886 | DRX179851 | DRS200450 | DRA008860 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.87743 | 0.19164 | 0.70025 | 0.49073 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 119 | 119 | DRR189385 | DRX179850 | DRS200435 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of EMX3 / adult zebrafish 3 | SAMD00182228 | sample name:Emx3 Adult Tel 3|genotype:Emx3 / |tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182228 | DRX179850 | Emx3 / Adult Tel 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182228 | 1323636552.0 | 36767682.0 | DRR189385 | 0:36 | A:309582925;C:310206951;G:325673647;T:378136039;N:36990 | 36 | 309582925 | 310206951 | 325673647 | 378136039 | 36990 | DRX179850 | DRS200435 | DRA008859 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.8932 | 0.19244 | 0.71334 | 0.50591 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 120 | 120 | DRR189384 | DRX179849 | DRS200434 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of EMX3 / adult zebrafish 2 | SAMD00182227 | sample name:Emx3 Adult Tel 2|genotype:Emx3 / |tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182227 | DRX179849 | Emx3 / Adult Tel 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182227 | 2994105168.0 | 83169588.0 | DRR189384 | 0:36 | A:709730692;C:691531995;G:727245229;T:865514929;N:82323 | 36 | 709730692 | 691531995 | 727245229 | 865514929 | 82323 | DRX179849 | DRS200434 | DRA008859 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.90382 | 0.1826 | 0.70197 | 0.49719 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 121 | 121 | DRR189383 | DRX179848 | DRS200433 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of EMX3 / adult zebrafish 1 | SAMD00182226 | sample name:Emx3 Adult Tel 1|genotype:Emx3 / |tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182226 | DRX179848 | Emx3 / Adult Tel 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182226 | 1151464896.0 | 31985136.0 | DRR189383 | 0:36 | A:272427216;C:266708394;G:280781178;T:331515997;N:32111 | 36 | 272427216 | 266708394 | 280781178 | 331515997 | 32111 | DRX179848 | DRS200433 | DRA008859 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89942 | 0.17402 | 0.70364 | 0.49438 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 122 | 122 | DRR189382 | DRX179847 | DRS200421 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of wild type adult zebrafish 3 | SAMD00182225 | sample name:WT Adult Tel 3|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182225 | DRX179847 | WT Adult Tel 3 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182225 | 2837488824.0 | 78819134.0 | DRR189382 | 0:36 | A:678395895;C:655098137;G:687520693;T:816395518;N:78581 | 36 | 678395895 | 655098137 | 687520693 | 816395518 | 78581 | DRX179847 | DRS200421 | DRA008858 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89483 | 0.18623 | 0.70544 | 0.49839 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 123 | 123 | DRR189381 | DRX179846 | DRS200420 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of wild type adult zebrafish 2 | SAMD00182224 | sample name:WT Adult Tel 2|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182224 | DRX179846 | WT Adult Tel 2 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182224 | 1456800264.0 | 40466674.0 | DRR189381 | 0:36 | A:345320431;C:336838149;G:356264798;T:418336552;N:40334 | 36 | 345320431 | 336838149 | 356264798 | 418336552 | 40334 | DRX179846 | DRS200420 | DRA008858 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89496 | 0.18691 | 0.70802 | 0.49721 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 124 | 124 | DRR189380 | DRX179845 | DRS200419 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of wild type adult zebrafish 1 | SAMD00182223 | sample name:WT Adult Tel 1|genotype:wild type|tissue:brain | Illumina HiSeq 3000 sequencing of SAMD00182223 | DRX179845 | WT Adult Tel 1 | 1 | SureSelect Strand Specific RNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 3000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 3000 sequencing of SAMD00182223 | 2533282452.0 | 70368957.0 | DRR189380 | 0:36 | A:602595083;C:585466052;G:616064286;T:729086926;N:70105 | 36 | 602595083 | 585466052 | 616064286 | 729086926 | 70105 | DRX179845 | DRS200419 | DRA008858 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 1 | 0.89412 | 0.19005 | 0.70816 | 0.49843 | 36 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||||||||||
| 131 | 131 | DRR189373 | DRX179838 | DRS200446 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Dissociated cells from telencephalon of wild type adult zebrafish 3 | SAMD00182216 | sample name:Cell Tel 3|genotype:wild type|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182216 | DRX179838 | Cell Tel 3 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182216 | 4142772200.0 | 20713861.0 | DRR189373 | 0:100 1:100 | A:1185533233;C:877739936;G:877025820;T:1202041821;N:431390 | 100 | 100 | 1185533233 | 877739936 | 877025820 | 1202041821 | 431390 | DRX179838 | DRS200446 | DRA008855 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.9018 | 0.90073 | 0.24953 | 0.25062 | 0.67884 | 0.67957 | 0.49957 | 0.5402 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 132 | 132 | DRR189372 | DRX179837 | DRS200445 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Dissociated cells from telencephalon of wild type adult zebrafish 2 | SAMD00182215 | sample name:Cell Tel 2|genotype:wild type|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182215 | DRX179837 | Cell Tel 2 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182215 | 5233184600.0 | 26165923.0 | DRR189372 | 0:100 1:100 | A:1522745973;C:1082449570;G:1076728796;T:1550682585;N:577676 | 100 | 100 | 1522745973 | 1082449570 | 1076728796 | 1550682585 | 577676 | DRX179837 | DRS200445 | DRA008855 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89481 | 0.89419 | 0.27137 | 0.27018 | 0.67639 | 0.67671 | 0.54949 | 0.55323 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 133 | 133 | DRR189371 | DRX179836 | DRS200444 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Dissociated cells from telencephalon of wild type adult zebrafish 1 | SAMD00182214 | sample name:Cell Tel 1|genotype:wild type|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182214 | DRX179836 | Cell Tel 1 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182214 | 4407578800.0 | 22037894.0 | DRR189371 | 0:100 1:100 | A:1270948410;C:923917605;G:922122984;T:1290126238;N:463563 | 100 | 100 | 1270948410 | 923917605 | 922122984 | 1290126238 | 463563 | DRX179836 | DRS200444 | DRA008855 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.90057 | 0.90117 | 0.24092 | 0.24074 | 0.67598 | 0.67775 | 0.53184 | 0.53433 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 134 | 134 | DRR189370 | DRX179835 | DRS200415 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 5 | SAMD00182213 | sample name:h62A GFP Tel 5|genotype:hspGFF62A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182213 | DRX179835 | h62A GFP Tel 5 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182213 | 2904332400.0 | 14521662.0 | DRR189370 | 0:100 1:100 | A:821602205;C:620206517;G:623738781;T:838474359;N:310538 | 100 | 100 | 821602205 | 620206517 | 623738781 | 838474359 | 310538 | DRX179835 | DRS200415 | DRA008854 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.91925 | 0.91942 | 0.14636 | 0.14584 | 0.71127 | 0.71429 | 0.62818 | 0.40804 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 135 | 135 | DRR189369 | DRX179834 | DRS200414 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 4 | SAMD00182212 | sample name:h62A GFP Tel 4|genotype:hspGFF62A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182212 | DRX179834 | h62A GFP Tel 4 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182212 | 4670374000.0 | 23351870.0 | DRR189369 | 0:100 1:100 | A:1294304230;C:1030286884;G:1032728119;T:1312561064;N:493703 | 100 | 100 | 1294304230 | 1030286884 | 1032728119 | 1312561064 | 493703 | DRX179834 | DRS200414 | DRA008854 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.92587 | 0.92725 | 0.12279 | 0.12312 | 0.71056 | 0.71293 | 0.57854 | 0.57882 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 136 | 136 | DRR189368 | DRX179833 | DRS200413 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 3 | SAMD00182211 | sample name:h62A GFP Tel 3|genotype:hspGFF62A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182211 | DRX179833 | h62A GFP Tel 3 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182211 | 11487645000.0 | 57438225.0 | DRR189368 | 0:100 1:100 | A:3127119396;C:2611288030;G:2547219656;T:3194997425;N:7020493 | 100 | 100 | 3127119396 | 2611288030 | 2547219656 | 3194997425 | 7020493 | DRX179833 | DRS200413 | DRA008854 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.91389 | 0.91371 | 0.11188 | 0.11336 | 0.74576 | 0.74639 | 0.56209 | 0.56027 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 137 | 137 | DRR189367 | DRX179832 | DRS200412 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 2 | SAMD00182210 | sample name:h62A GFP Tel 2|genotype:hspGFF62A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182210 | DRX179832 | h62A GFP Tel 2 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182210 | 13536257200.0 | 67681286.0 | DRR189367 | 0:100 1:100 | A:3723068804;C:3049411151;G:2951685691;T:3803778575;N:8312979 | 100 | 100 | 3723068804 | 3049411151 | 2951685691 | 3803778575 | 8312979 | DRX179832 | DRS200412 | DRA008854 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.9136 | 0.91493 | 0.14102 | 0.14249 | 0.70534 | 0.70569 | 0.58385 | 0.58171 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 138 | 138 | DRR189366 | DRX179831 | DRS200411 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 1 | SAMD00182209 | sample name:h62A GFP Tel 1|genotype:hspGFF62A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182209 | DRX179831 | h62A GFP Tel 1 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182209 | 13057029600.0 | 65285148.0 | DRR189366 | 0:100 1:100 | A:3609997372;C:2912841795;G:2821782510;T:3704302917;N:8105006 | 100 | 100 | 3609997372 | 2912841795 | 2821782510 | 3704302917 | 8105006 | DRX179831 | DRS200411 | DRA008854 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.90766 | 0.90786 | 0.13813 | 0.14007 | 0.73677 | 0.73777 | 0.55675 | 0.55743 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 139 | 139 | DRR189365 | DRX179830 | DRS200432 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 4 | SAMD00182208 | sample name:120A GFP Tel 4|genotype:SAGFF120A;UAS:GFP|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00182208 | DRX179830 | 120A GFP Tel 4 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2000 paired end sequencing of SAMD00182208 | 4105132200.0 | 20525661.0 | DRR189365 | 0:100 1:100 | A:1171500567;C:874901685;G:872257219;T:1186025546;N:447183 | 100 | 100 | 1171500567 | 874901685 | 872257219 | 1186025546 | 447183 | DRX179830 | DRS200432 | DRA008853 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.91106 | 0.90924 | 0.18729 | 0.18688 | 0.69406 | 0.69589 | 0.51697 | 0.51253 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 140 | 140 | DRR189364 | DRX179829 | DRS200431 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 3 | SAMD00182207 | sample name:120A GFP Tel 3|genotype:SAGFF120A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182207 | DRX179829 | 120A GFP Tel 3 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182207 | 5062007400.0 | 25310037.0 | DRR189364 | 0:100 1:100 | A:1425414609;C:1105334563;G:1072448536;T:1458726402;N:83290 | 100 | 100 | 1425414609 | 1105334563 | 1072448536 | 1458726402 | 83290 | DRX179829 | DRS200431 | DRA008853 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89598 | 0.89539 | 0.2645 | 0.2668 | 0.69591 | 0.6971 | 0.49901 | 0.49932 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 141 | 141 | DRR189363 | DRX179828 | DRS200430 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 2 | SAMD00182206 | sample name:120A GFP Tel 2|genotype:SAGFF120A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182206 | DRX179828 | 120A GFP Tel 2 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182206 | 4148886200.0 | 20744431.0 | DRR189363 | 0:100 1:100 | A:1121946535;C:959659540;G:901840216;T:1165367793;N:72116 | 100 | 100 | 1121946535 | 959659540 | 901840216 | 1165367793 | 72116 | DRX179828 | DRS200430 | DRA008853 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89808 | 0.89803 | 0.14106 | 0.14229 | 0.74057 | 0.74073 | 0.58127 | 0.58258 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 142 | 142 | DRR189362 | DRX179827 | DRS200429 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 1 | SAMD00182205 | sample name:120A GFP Tel 1|genotype:SAGFF120A;UAS:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182205 | DRX179827 | 120A GFP Tel 1 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182205 | 5621230800.0 | 28106154.0 | DRR189362 | 0:100 1:100 | A:1511319423;C:1299516107;G:1236814355;T:1573482053;N:98862 | 100 | 100 | 1511319423 | 1299516107 | 1236814355 | 1573482053 | 98862 | DRX179827 | DRS200429 | DRA008853 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.90171 | 0.90205 | 0.11967 | 0.12059 | 0.74083 | 0.74113 | 0.61779 | 0.61682 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 143 | 143 | DRR189361 | DRX179826 | DRS200425 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form whole brain of HuC:GFP adult zebrafish 4 | SAMD00182204 | sample name:HuC GFP WB 4|genotype:HuC:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182204 | DRX179826 | HuC GFP WB 4 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182204 | 3641515200.0 | 18207576.0 | DRR189361 | 0:100 1:100 | A:1038686472;C:777269450;G:777179582;T:1047994354;N:385342 | 100 | 100 | 1038686472 | 777269450 | 777179582 | 1047994354 | 385342 | DRX179826 | DRS200425 | DRA008852 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.91246 | 0.9127 | 0.18566 | 0.18547 | 0.70201 | 0.7024 | 0.47049 | 0.47102 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 144 | 144 | DRR189360 | DRX179825 | DRS200424 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form whole brain of HuC:GFP adult zebrafish 3 | SAMD00182203 | sample name:HuC GFP WB 3|genotype:HuC:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182203 | DRX179825 | HuC GFP WB 3 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182203 | 4692211000.0 | 23461055.0 | DRR189360 | 0:100 1:100 | A:1310884816;C:1036187295;G:997846600;T:1347212024;N:80265 | 100 | 100 | 1310884816 | 1036187295 | 997846600 | 1347212024 | 80265 | DRX179825 | DRS200424 | DRA008852 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89626 | 0.89739 | 0.18174 | 0.18338 | 0.72443 | 0.72588 | 0.4577 | 0.46684 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 145 | 145 | DRR189359 | DRX179824 | DRS200423 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form whole brain of HuC:GFP adult zebrafish 2 | SAMD00182202 | sample name:HuC GFP WB 2|genotype:HuC:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182202 | DRX179824 | HuC GFP WB 2 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182202 | 7514071000.0 | 37570355.0 | DRR189359 | 0:100 1:100 | A:2098251885;C:1661407212;G:1597423444;T:2156861774;N:126685 | 100 | 100 | 2098251885 | 1661407212 | 1597423444 | 2156861774 | 126685 | DRX179824 | DRS200423 | DRA008852 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89548 | 0.89691 | 0.26231 | 0.26473 | 0.70358 | 0.70471 | 0.4732 | 0.4753 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 146 | 146 | DRR189358 | DRX179823 | DRS200422 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | GFP cells form whole brain of HuC:GFP adult zebrafish 1 | SAMD00182201 | sample name:HuC GFP WB 1|genotype:HuC:GFP|tissue:brain | Illumina HiSeq 2500 paired end sequencing of SAMD00182201 | DRX179823 | HuC GFP WB 1 | 1 | The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00182201 | 5175824800.0 | 25879124.0 | DRR189358 | 0:100 1:100 | A:1424688686;C:1174545239;G:1128653980;T:1447848363;N:88532 | 100 | 100 | 1424688686 | 1174545239 | 1128653980 | 1447848363 | 88532 | DRX179823 | DRS200422 | DRA008852 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.91906 | 0.91958 | 0.20879 | 0.21088 | 0.74787 | 0.74876 | 0.45243 | 0.45221 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2021-08-08 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 147 | 147 | DRR051067 | DRX045959 | DRS057267 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | These cells are from the same fish as h62A GFP plus Tel | GFP cells from telencephalon of hspGFF62A;UAS:GFP transgenic zebrafish | SAMD00044994 | sample name:h62A GFP minus Tel|tissue type:brain|genotype:hspGFF62A;UAS:GFP | Illumina HiSeq 2500 paired end sequencing of SAMD00044994 | DRX045959 | h62A GFP minus Tel | 1 | cDNA synthesis : clontech SMARTer v3 > Library prep : Illumina Nextera XT DNA Library Preparation Kits | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044994 | 17913873600.0 | 89569368.0 | DRR051067 | 0:100 1:100 | A:5009629866;C:3957379257;G:3797879751;T:5144366288;N:4618438 | 100 | 100 | 5009629866 | 3957379257 | 3797879751 | 5144366288 | 4618438 | DRX045959 | DRS057267 | DRA004277 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89075 | 0.89087 | 0.23044 | 0.23295 | 0.69493 | 0.69769 | 0.5366 | 0.54852 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2018-01-06 | Undetermined | Undetermined | Brain | Nervous System | ||||||||||||||||||
| 148 | 148 | DRR051066 | DRX045958 | DRS057275 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Collected from 40 adult fish by using FACS | GFP+ cells from telencephalon of hspGFF62A;UAS:GFP transgenic zebrafish | SAMD00044995 | sample name:h62A GFP plus Tel|tissue type:brain|genotype:hspGFF62A;UAS:GFP | Illumina HiSeq 2500 paired end sequencing of SAMD00044995 | DRX045958 | h62A GFP plus Tel | 1 | cDNA synthesis : clontech SMARTer v3 > Library prep : Illumina Nextera XT DNA Library Preparation Kits | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044995 | 17421256000.0 | 87106280.0 | DRR051066 | 0:100 1:100 | A:4859368314;C:3846634012;G:3717526030;T:4993260256;N:4467388 | 100 | 100 | 4859368314 | 3846634012 | 3717526030 | 4993260256 | 4467388 | DRX045958 | DRS057275 | DRA004276 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.88127 | 0.88114 | 0.22941 | 0.23155 | 0.72161 | 0.72437 | 0.49284 | 0.49449 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | nextera | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 149 | 149 | DRR051065 | DRX045957 | DRS057272 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon from adult zebrafrish 30 min post light and electrical shock association in non trace Two Way Active Avoidance conditioning | CS+US telencephalon 30 min post TWAA | SAMD00044990 | sample name:CS+US Tel 30|tissue type:brain|genotype:WT | Illumina HiSeq 2500 paired end sequencing of SAMD00044990 | DRX045957 | CS+US Tel 30 | 1 | Illumina Truseq RNA Library Prep Kit v2 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044990 | 20239329200.0 | 101196646.0 | DRR051065 | 0:100 1:100 | A:5347169722;C:4777492672;G:4750401220;T:5361888239;N:2377347 | 100 | 100 | 5347169722 | 4777492672 | 4750401220 | 5361888239 | 2377347 | DRX045957 | DRS057272 | DRA004275 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.93576 | 0.93353 | 0.13979 | 0.14019 | 0.70043 | 0.70203 | 0.48989 | 0.49214 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 150 | 150 | DRR051064 | DRX045956 | DRS057265 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon from adult zebrafrish 30 min post light stimulation in Two Way Active Avoidance coditioning | CS telencephalon 30 min post TWAA | SAMD00044991 | sample name:CS Tel 30|tissue type:brain|genotype:WT | Illumina HiSeq 2500 paired end sequencing of SAMD00044991 | DRX045956 | CS Tel 30 | 1 | Illumina Truseq RNA Library Prep Kit v2 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044991 | 29268319600.0 | 146341598.0 | DRR051064 | 0:100 1:100 | A:7777792429;C:6878969107;G:6819275179;T:7788795270;N:3487615 | 100 | 100 | 7777792429 | 6878969107 | 6819275179 | 7788795270 | 3487615 | DRX045956 | DRS057265 | DRA004274 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.93646 | 0.93664 | 0.14051 | 0.14191 | 0.70199 | 0.70374 | 0.49256 | 0.49684 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 151 | 151 | DRR051063 | DRX045955 | DRS057266 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | These cells are from the same fish as 120A GFP plus Tel | GFP cells from telencephalon of SAGFFLF120A;UAS:GFP transgenic zebrafish | SAMD00044987 | sample name:120A GFP minus Tel|tissue type:brain|genotype:SAGFFLF120A;UAS:GFP | Illumina HiSeq 2500 paired end sequencing of SAMD00044987 | DRX045955 | 120A GFP minus Tel | 1 | cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044987 | 15411400120.0 | 76294060.0 | DRR051063 | 0:101 1:101 | A:4583085286;C:3082552426;G:3134669086;T:4606055524;N:5037798 | 101 | 101 | 4583085286 | 3082552426 | 3134669086 | 4606055524 | 5037798 | DRX045955 | DRS057266 | DRA004273 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.89184 | 0.8842 | 0.30246 | 0.30334 | 0.69232 | 0.705 | 0.52824 | 0.51492 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | smarter | bulk | unknown | unknown | Japan | 2018-01-06 | Undetermined | Undetermined | Brain | Nervous System | ||||||||||||||||||
| 152 | 152 | DRR051062 | DRX045954 | DRS057271 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Collected from 40 adult fish by using FACS | GFP+ cells from telencephalon of SAGFFLF120A;UAS:GFP transgenic zebrafish | SAMD00044988 | sample name:120A GFP plus Tel|tissue type:brain|genotype:SAGFFLF120A;UAS:GFP | Illumina HiSeq 2500 paired end sequencing of SAMD00044988 | DRX045954 | 120A GFP plus Tel | 1 | cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044988 | 9916242014.0 | 49090307.0 | DRR051062 | 0:101 1:101 | A:2991626000;C:1935418605;G:1974202781;T:3011783158;N:3211470 | 101 | 101 | 2991626000 | 1935418605 | 1974202781 | 3011783158 | 3211470 | DRX045954 | DRS057271 | DRA004272 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.87779 | 0.86382 | 0.2948 | 0.28993 | 0.72809 | 0.74075 | 0.50317 | 0.49169 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | smarter | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 153 | 153 | DRR051061 | DRX045953 | DRS057274 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Collected from 10 adult fish by using FACS | GFP+ cells from whole brain of SAGFFLF231A;UAS:GFP transgenic zebrafish | SAMD00044989 | sample name:231A GFP plus WB|tissue type:brain|genotype:SAGFFLF231A;UAS:GFP | Illumina HiSeq 2500 paired end sequencing of SAMD00044989 | DRX045953 | 231A GFP plus WB | 1 | cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044989 | 27230654000.0 | 136153270.0 | DRR051061 | 0:101 1:99 | A:7929214734;C:5506861409;G:5563593280;T:8059057191;N:171927386 | 101 | 99 | 7929214734 | 5506861409 | 5563593280 | 8059057191 | 171927386 | DRX045953 | DRS057274 | DRA004271 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.88462 | 0.88282 | 0.26215 | 0.26067 | 0.72468 | 0.73555 | 0.48369 | 0.48285 | 101 | 99 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | cdna_unspecified | smarter | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 154 | 154 | DRR051060 | DRX045952 | DRS057269 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Telencephalon of adult zebrafrish barin | zebrafihsh telencephalon | SAMD00044992 | sample name:Tel|tissue type:brain|genotype:WT | Illumina HiSeq 2500 paired end sequencing of SAMD00044992 | DRX045952 | Tel | 1 | Illumina Truseq RNA Library Prep Kit v2 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044992 | 20006128076.0 | 99040238.0 | DRR051060 | 0:101 1:101 | A:5393556813;C:4623783008;G:4592812230;T:5384415659;N:11560366 | 101 | 101 | 5393556813 | 4623783008 | 4592812230 | 5384415659 | 11560366 | DRX045952 | DRS057269 | DRA004270 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.94215 | 0.94001 | 0.16398 | 0.16585 | 0.69331 | 0.69479 | 0.4872 | 0.48516 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 155 | 155 | DRR051059 | DRX045951 | DRS057270 | DRP003977 | PRJDB4470 | Gene expression analysis of the zebrafish brain | DRP003977 | Other | Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors. | Whole brain of adult zebrafish | zebrafish whole brain | SAMD00044993 | sample name:WB|tissue type:brain|genotype:WT | Illumina HiSeq 2500 paired end sequencing of SAMD00044993 | DRX045951 | WB | 1 | Illumina Truseq RNA Library Prep Kit v2 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003977 | Illumina HiSeq 2500 paired end sequencing of SAMD00044993 | 25283347776.0 | 125165088.0 | DRR051059 | 0:101 1:101 | A:6845696813;C:5810492697;G:5775241119;T:6837142940;N:14774207 | 101 | 101 | 6845696813 | 5810492697 | 5775241119 | 6837142940 | 14774207 | DRX045951 | DRS057270 | DRA004269 | NIG|National Institute of Genetics (Japan) | National Institute of Genetics (Japan) | 2 | 0.94203 | 0.94067 | 0.15107 | 0.15158 | 0.68651 | 0.6882 | 0.49596 | 0.49589 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-01-06 | Adult | Adult | Brain | Nervous System | ||||||||||||||||||
| 156 | 156 | DRR067143 | DRX061087 | DRS034141 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Bergmann glial cells using Tg line SAGFFLF251A sample 2 | SAMD00057666 | sample name:Zebrafish 251A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:bergmann glial cells|dev stage:14 dpf|replicate:biological replicate 2 | Illumina HiSeq 1500 paired end sequencing of SAMD00057666 | DRX061087 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057666 | 2040373922.0 | 10100861.0 | DRR067143 | 0:101 1:101 | A:577691972;C:445051245;G:472607289;T:544962357;N:61059 | 101 | 101 | 577691972 | 445051245 | 472607289 | 544962357 | 61059 | DRX061087 | DRS034141 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.83407 | 0.83802 | 0.12612 | 0.12666 | 0.73675 | 0.74079 | 0.4948 | 0.49282 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 157 | 157 | DRR067142 | DRX061086 | DRS034140 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Bergmann glial cells using Tg line SAGFFLF251A sample 1 | SAMD00057665 | sample name:Zebrafish 251A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:bergmann glial cells|dev stage:14 dpf|replicate:biological replicate 1 | Illumina HiSeq 1500 paired end sequencing of SAMD00057665 | DRX061086 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057665 | 2033951534.0 | 10069067.0 | DRR067142 | 0:101 1:101 | A:589558269;C:431084184;G:460501802;T:552746498;N:60781 | 101 | 101 | 589558269 | 431084184 | 460501802 | 552746498 | 60781 | DRX061086 | DRS034140 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.8958 | 0.90339 | 0.13764 | 0.1385 | 0.72563 | 0.72865 | 0.49373 | 0.49916 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 158 | 158 | DRR067141 | DRX061085 | DRS034139 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 3 | SAMD00057664 | sample name:Zebrafish aldoca 03|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 3 | Illumina HiSeq 1500 paired end sequencing of SAMD00057664 | DRX061085 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057664 | 1931908608.0 | 9563904.0 | DRR067141 | 0:101 1:101 | A:558444394;C:409856521;G:429168864;T:534380258;N:58571 | 101 | 101 | 558444394 | 409856521 | 429168864 | 534380258 | 58571 | DRX061085 | DRS034139 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.88632 | 0.89109 | 0.15695 | 0.15773 | 0.75694 | 0.7599 | 0.46875 | 0.49236 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 159 | 159 | DRR067140 | DRX061084 | DRS034138 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 2 | SAMD00057663 | sample name:Zebrafish aldoca 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 2 | Illumina HiSeq 1500 paired end sequencing of SAMD00057663 | DRX061084 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057663 | 1851108406.0 | 9163903.0 | DRR067140 | 0:101 1:101 | A:537339104;C:390802782;G:416335529;T:506575762;N:55229 | 101 | 101 | 537339104 | 390802782 | 416335529 | 506575762 | 55229 | DRX061084 | DRS034138 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.9055 | 0.91341 | 0.1515 | 0.15333 | 0.76495 | 0.76719 | 0.49219 | 0.49012 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 160 | 160 | DRR067139 | DRX061083 | DRS034137 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 1 | SAMD00057662 | sample name:Zebrafish aldoca 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 1 | Illumina HiSeq 1500 paired end sequencing of SAMD00057662 | DRX061083 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057662 | 2000078962.0 | 9901381.0 | DRR067139 | 0:101 1:101 | A:583169141;C:420603631;G:446949308;T:549297272;N:59610 | 101 | 101 | 583169141 | 420603631 | 446949308 | 549297272 | 59610 | DRX061083 | DRS034137 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.9056 | 0.90932 | 0.15092 | 0.15179 | 0.76173 | 0.7654 | 0.49028 | 0.49604 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 161 | 161 | DRR067138 | DRX061082 | DRS034136 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for granule cells using Tg line gSA2AzGFF152B sample 2 | SAMD00057661 | sample name:Zebrafish 152B 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:granule cells|dev stage:14 dpf|replicate:biological replicate 2 | Illumina HiSeq 1500 paired end sequencing of SAMD00057661 | DRX061082 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057661 | 1997432156.0 | 9888278.0 | DRR067138 | 0:101 1:101 | A:578466824;C:423038930;G:449779231;T:546086391;N:60780 | 101 | 101 | 578466824 | 423038930 | 449779231 | 546086391 | 60780 | DRX061082 | DRS034136 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.90322 | 0.91109 | 0.1463 | 0.14811 | 0.75452 | 0.75633 | 0.48303 | 0.48557 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 162 | 162 | DRR067137 | DRX061081 | DRS034135 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for granule cells using Tg line gSA2AzGFF152B sample 1 | SAMD00057660 | sample name:Zebrafish 152B 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:granule cells|dev stage:14 dpf|replicate:biological replicate 1 | Illumina HiSeq 1500 paired end sequencing of SAMD00057660 | DRX061081 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057660 | 1908437218.0 | 9447709.0 | DRR067137 | 0:101 1:101 | A:552150223;C:401993096;G:427236477;T:527000978;N:56444 | 101 | 101 | 552150223 | 401993096 | 427236477 | 527000978 | 56444 | DRX061081 | DRS034135 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.90474 | 0.91043 | 0.17336 | 0.17401 | 0.76108 | 0.76359 | 0.483 | 0.48537 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 163 | 163 | DRR067136 | DRX061080 | DRS034134 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 3 | SAMD00057659 | sample name:Zebrafish 28C 03|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 3 | Illumina HiSeq 1500 paired end sequencing of SAMD00057659 | DRX061080 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057659 | 1982971178.0 | 9816689.0 | DRR067136 | 0:101 1:101 | A:504064758;C:488246993;G:520130333;T:470469799;N:59295 | 101 | 101 | 504064758 | 488246993 | 520130333 | 470469799 | 59295 | DRX061080 | DRS034134 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.53386 | 0.54375 | 0.06072 | 0.06189 | 0.76351 | 0.76641 | 0.4872 | 0.48857 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 164 | 164 | DRR067135 | DRX061079 | DRS034133 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 2 | SAMD00057658 | sample name:Zebrafish 28C 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 2 | Illumina HiSeq 1500 paired end sequencing of SAMD00057658 | DRX061079 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057658 | 1961048320.0 | 9708160.0 | DRR067135 | 0:101 1:101 | A:557469151;C:424691789;G:455244994;T:523583601;N:58785 | 101 | 101 | 557469151 | 424691789 | 455244994 | 523583601 | 58785 | DRX061079 | DRS034133 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.84854 | 0.8526 | 0.10311 | 0.1042 | 0.75227 | 0.75499 | 0.49321 | 0.49435 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 165 | 165 | DRR067134 | DRX061078 | DRS034132 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 1 | SAMD00057657 | sample name:Zebrafish 28C 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 1 | Illumina HiSeq 1500 paired end sequencing of SAMD00057657 | DRX061078 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057657 | 1931802760.0 | 9563380.0 | DRR067134 | 0:101 1:101 | A:546501397;C:422500710;G:452200521;T:510543489;N:56643 | 101 | 101 | 546501397 | 422500710 | 452200521 | 510543489 | 56643 | DRX061078 | DRS034132 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.85439 | 0.85613 | 0.09867 | 0.09897 | 0.76871 | 0.77082 | 0.48943 | 0.48936 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 166 | 166 | DRR067133 | DRX061077 | DRS034131 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 2 | SAMD00057656 | sample name:Zebrafish 156A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 2 | Illumina HiSeq 1500 paired end sequencing of SAMD00057656 | DRX061077 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057656 | 2054289096.0 | 10169748.0 | DRR067133 | 0:101 1:101 | A:563764176;C:464768863;G:497506420;T:528187503;N:62134 | 101 | 101 | 563764176 | 464768863 | 497506420 | 528187503 | 62134 | DRX061077 | DRS034131 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.69311 | 0.6968 | 0.12309 | 0.12389 | 0.76428 | 0.76676 | 0.48379 | 0.48227 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 167 | 167 | DRR067132 | DRX061076 | DRS034130 | DRP003275 | PRJDB4941 | Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum | DRP003275 | Other | An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA. | Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 1 | SAMD00057655 | sample name:Zebrafish 156A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 1 | Illumina HiSeq 1500 paired end sequencing of SAMD00057655 | DRX061076 | 1 | 1 | Quartz seq for low amount total RNA | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP003275 | Illumina HiSeq 1500 paired end sequencing of SAMD00057655 | 2152665722.0 | 10656761.0 | DRR067132 | 0:101 1:101 | A:585252781;C:495382257;G:522677749;T:549287359;N:65576 | 101 | 101 | 585252781 | 495382257 | 522677749 | 549287359 | 65576 | DRX061076 | DRS034130 | DRA004955 | RIKEN_CLST_DBFDI|Phyloinformatics Unit | RIKEN CLST | 2 | 0.67771 | 0.68253 | 0.12949 | 0.1303 | 0.77216 | 0.77542 | 0.4951 | 0.49452 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | quartzseq | Japan | 2016-09-19 | Larval | Larval | Brain | Nervous System | |||||||||||||||||||
| 260 | 260 | DRR162481 | DRX153100 | DRS083161 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 39 mpf zebrafish replicate5 | SAMD00152429 | sample name:b39 5|age:39 month|biological replicate:5|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152429 | DRX153100 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152429 | 1252728200.0 | 6263641.0 | DRR162481 | 0:100 1:100 | A:367502128;C:257734618;G:257260262;T:368202459;N:2028733 | 100 | 100 | 367502128 | 257734618 | 257260262 | 368202459 | 2028733 | DRX153100 | DRS083161 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92142 | 0.8899 | 0.17636 | 0.1685 | 0.70686 | 0.7166 | 0.53271 | 0.54366 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 261 | 261 | DRR162480 | DRX153099 | DRS083160 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 39 mpf zebrafish replicate4 | SAMD00152428 | sample name:b39 4|age:39 month|biological replicate:4|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152428 | DRX153099 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152428 | 1426772800.0 | 7133864.0 | DRR162480 | 0:100 1:100 | A:408404333;C:303657580;G:303201065;T:408996815;N:2513007 | 100 | 100 | 408404333 | 303657580 | 303201065 | 408996815 | 2513007 | DRX153099 | DRS083160 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92435 | 0.89379 | 0.16127 | 0.15446 | 0.69844 | 0.70554 | 0.53646 | 0.533 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 262 | 262 | DRR162479 | DRX153098 | DRS083159 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 39 mpf zebrafish replicate3 | SAMD00152427 | sample name:b39 3|age:39 month|biological replicate:3|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152427 | DRX153098 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152427 | 1197809800.0 | 5989049.0 | DRR162479 | 0:100 1:100 | A:348955835;C:249141949;G:248747996;T:348970452;N:1993568 | 100 | 100 | 348955835 | 249141949 | 248747996 | 348970452 | 1993568 | DRX153098 | DRS083159 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92402 | 0.89389 | 0.1731 | 0.1668 | 0.70938 | 0.72892 | 0.55061 | 0.56711 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 263 | 263 | DRR162478 | DRX153097 | DRS083158 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 39 mpf zebrafish replicate2 | SAMD00152426 | sample name:b39 2|age:39 month|biological replicate:2|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152426 | DRX153097 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152426 | 1389632200.0 | 6948161.0 | DRR162478 | 0:100 1:100 | A:397337261;C:295934915;G:295794427;T:398240347;N:2325250 | 100 | 100 | 397337261 | 295934915 | 295794427 | 398240347 | 2325250 | DRX153097 | DRS083158 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92803 | 0.89621 | 0.15624 | 0.14998 | 0.69988 | 0.70985 | 0.54263 | 0.53655 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 264 | 264 | DRR162477 | DRX153096 | DRS083157 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 39 mpf zebrafish replicate1 | SAMD00152425 | sample name:b39 1|age:39 month|biological replicate:1|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152425 | DRX153096 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152425 | 1413538400.0 | 7067692.0 | DRR162477 | 0:100 1:100 | A:427890787;C:277522619;G:278488081;T:427755965;N:1880948 | 100 | 100 | 427890787 | 277522619 | 278488081 | 427755965 | 1880948 | DRX153096 | DRS083157 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.90967 | 0.88004 | 0.20536 | 0.19647 | 0.71384 | 0.72021 | 0.55413 | 0.55769 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 265 | 265 | DRR162476 | DRX153095 | DRS083156 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 16 mpf zebrafish replicate5 | SAMD00152424 | sample name:b16 5|age:16 month|biological replicate:5|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152424 | DRX153095 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152424 | 1256635000.0 | 6283175.0 | DRR162476 | 0:100 1:100 | A:385448452;C:241878013;G:242164401;T:385408510;N:1735624 | 100 | 100 | 385448452 | 241878013 | 242164401 | 385408510 | 1735624 | DRX153095 | DRS083156 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91032 | 0.87693 | 0.19953 | 0.19064 | 0.72575 | 0.73474 | 0.49199 | 0.5657 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 266 | 266 | DRR162475 | DRX153094 | DRS083155 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 16 mpf zebrafish replicate4 | SAMD00152423 | sample name:b16 4|age:16 month|biological replicate:4|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152423 | DRX153094 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152423 | 2577820600.0 | 12889103.0 | DRR162475 | 0:100 1:100 | A:783031561;C:503484597;G:503899732;T:784003178;N:3401532 | 100 | 100 | 783031561 | 503484597 | 503899732 | 784003178 | 3401532 | DRX153094 | DRS083155 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91098 | 0.87948 | 0.20945 | 0.19993 | 0.71758 | 0.72543 | 0.56796 | 0.56453 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 267 | 267 | DRR162474 | DRX153093 | DRS083154 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 16 mpf zebrafish replicate3 | SAMD00152422 | sample name:b16 3|age:16 month|biological replicate:3|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152422 | DRX153093 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152422 | 1147257600.0 | 5736288.0 | DRR162474 | 0:100 1:100 | A:357829214;C:214920802;G:215124134;T:357870811;N:1512639 | 100 | 100 | 357829214 | 214920802 | 215124134 | 357870811 | 1512639 | DRX153093 | DRS083154 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.90822 | 0.88184 | 0.20468 | 0.19612 | 0.73992 | 0.74627 | 0.58395 | 0.50711 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 268 | 268 | DRR162473 | DRX153092 | DRS083153 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 16 mpf zebrafish replicate2 | SAMD00152421 | sample name:b16 2|age:16 month|biological replicate:2|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152421 | DRX153092 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152421 | 1399740200.0 | 6998701.0 | DRR162473 | 0:100 1:100 | A:420492615;C:278464854;G:278362101;T:420657546;N:1763084 | 100 | 100 | 420492615 | 278464854 | 278362101 | 420657546 | 1763084 | DRX153092 | DRS083153 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91795 | 0.88458 | 0.19015 | 0.18122 | 0.71374 | 0.72318 | 0.55157 | 0.55554 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 269 | 269 | DRR162472 | DRX153091 | DRS083152 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 16 mpf zebrafish replicate1 | SAMD00152420 | sample name:b16 1|age:16 month|biological replicate:1|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152420 | DRX153091 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152420 | 1109512400.0 | 5547562.0 | DRR162472 | 0:100 1:100 | A:336800225;C:217086705;G:217195789;T:336929233;N:1500448 | 100 | 100 | 336800225 | 217086705 | 217195789 | 336929233 | 1500448 | DRX153091 | DRS083152 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91025 | 0.87734 | 0.20046 | 0.19197 | 0.71774 | 0.72482 | 0.52937 | 0.56111 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 270 | 270 | DRR162471 | DRX153090 | DRS083151 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 7 mpf zebrafish replicate5 | SAMD00152419 | sample name:b07 5|age:7 month|biological replicate:5|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152419 | DRX153090 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152419 | 1472475400.0 | 7362377.0 | DRR162471 | 0:100 1:100 | A:448100356;C:287211180;G:287652290;T:447581010;N:1930564 | 100 | 100 | 448100356 | 287211180 | 287652290 | 447581010 | 1930564 | DRX153090 | DRS083151 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.90584 | 0.87079 | 0.21738 | 0.2083 | 0.71415 | 0.7344 | 0.5518 | 0.55812 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 271 | 271 | DRR162470 | DRX153089 | DRS083150 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 7 mpf zebrafish replicate4 | SAMD00152418 | sample name:b07 4|age:7 month|biological replicate:4|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152418 | DRX153089 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152418 | 1173234000.0 | 5866170.0 | DRR162470 | 0:100 1:100 | A:349147253;C:236479543;G:237153294;T:348938811;N:1515099 | 100 | 100 | 349147253 | 236479543 | 237153294 | 348938811 | 1515099 | DRX153089 | DRS083150 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91933 | 0.88973 | 0.18681 | 0.17878 | 0.71108 | 0.71867 | 0.5448 | 0.55274 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 272 | 272 | DRR162469 | DRX153088 | DRS083149 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 7 mpf zebrafish replicate3 | SAMD00152417 | sample name:b07 3|age:7 month|biological replicate:3|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152417 | DRX153088 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152417 | 1322055600.0 | 6610278.0 | DRR162469 | 0:100 1:100 | A:387777992;C:270907178;G:273067585;T:387904272;N:2398573 | 100 | 100 | 387777992 | 270907178 | 273067585 | 387904272 | 2398573 | DRX153088 | DRS083149 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91753 | 0.88469 | 0.17775 | 0.17007 | 0.70656 | 0.71685 | 0.5466 | 0.54528 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 273 | 273 | DRR162468 | DRX153087 | DRS083148 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 7 mpf zebrafish replicate2 | SAMD00152416 | sample name:b07 2|age:7 month|biological replicate:2|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152416 | DRX153087 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152416 | 1160349000.0 | 5801745.0 | DRR162468 | 0:100 1:100 | A:350211581;C:228387129;G:229679563;T:349919152;N:2151575 | 100 | 100 | 350211581 | 228387129 | 229679563 | 349919152 | 2151575 | DRX153087 | DRS083148 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91146 | 0.87717 | 0.20422 | 0.19494 | 0.7083 | 0.72082 | 0.55642 | 0.56386 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 274 | 274 | DRR162467 | DRX153086 | DRS083147 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 7 mpf zebrafish replicate1 | SAMD00152415 | sample name:b07 1|age:7 month|biological replicate:1|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152415 | DRX153086 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152415 | 1162314600.0 | 5811573.0 | DRR162467 | 0:100 1:100 | A:344932586;C:233867698;G:235450342;T:345967852;N:2096122 | 100 | 100 | 344932586 | 233867698 | 235450342 | 345967852 | 2096122 | DRX153086 | DRS083147 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91102 | 0.88248 | 0.1897 | 0.18307 | 0.70786 | 0.71687 | 0.55008 | 0.54646 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System | |||||||||||||||||||
| 275 | 275 | DRR162466 | DRX153085 | DRS083146 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 2 mpf zebrafish replicate5 | SAMD00152414 | sample name:b02 5|age:2 month|biological replicate:5|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152414 | DRX153085 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152414 | 1184455800.0 | 5922279.0 | DRR162466 | 0:100 1:100 | A:357035323;C:233685447;G:235595745;T:356085837;N:2053448 | 100 | 100 | 357035323 | 233685447 | 235595745 | 356085837 | 2053448 | DRX153085 | DRS083146 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.90819 | 0.87146 | 0.20659 | 0.19751 | 0.71246 | 0.72251 | 0.52523 | 0.52531 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Juvenile | Juvenile | Brain | Nervous System | |||||||||||||||||||
| 276 | 276 | DRR162465 | DRX153084 | DRS083145 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 2 mpf zebrafish replicate4 | SAMD00152413 | sample name:b02 4|age:2 month|biological replicate:4|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152413 | DRX153084 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152413 | 1389141000.0 | 6945705.0 | DRR162465 | 0:100 1:100 | A:423029010;C:270113394;G:270981952;T:422602360;N:2414284 | 100 | 100 | 423029010 | 270113394 | 270981952 | 422602360 | 2414284 | DRX153084 | DRS083145 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.90961 | 0.87739 | 0.21147 | 0.20152 | 0.71492 | 0.72563 | 0.53639 | 0.53779 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Juvenile | Juvenile | Brain | Nervous System | |||||||||||||||||||
| 277 | 277 | DRR162464 | DRX153083 | DRS083144 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 2 mpf zebrafish replicate3 | SAMD00152412 | sample name:b02 3|age:2 month|biological replicate:3|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152412 | DRX153083 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152412 | 2322459000.0 | 11612295.0 | DRR162464 | 0:100 1:100 | A:701085106;C:457451297;G:460424165;T:699185460;N:4312972 | 100 | 100 | 701085106 | 457451297 | 460424165 | 699185460 | 4312972 | DRX153083 | DRS083144 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92479 | 0.89382 | 0.16108 | 0.1547 | 0.73312 | 0.74121 | 0.55089 | 0.55507 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Juvenile | Juvenile | Brain | Nervous System | |||||||||||||||||||
| 278 | 278 | DRR162463 | DRX153082 | DRS083143 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 2 mpf zebrafish replicate2 | SAMD00152411 | sample name:b02 2|age:2 month|biological replicate:2|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152411 | DRX153082 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152411 | 1188406400.0 | 5942032.0 | DRR162463 | 0:100 1:100 | A:354575190;C:238508166;G:239587004;T:353623510;N:2112530 | 100 | 100 | 354575190 | 238508166 | 239587004 | 353623510 | 2112530 | DRX153082 | DRS083143 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.90922 | 0.8787 | 0.20709 | 0.2009 | 0.71614 | 0.7362 | 0.52768 | 0.53049 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Juvenile | Juvenile | Brain | Nervous System | |||||||||||||||||||
| 279 | 279 | DRR162462 | DRX153081 | DRS083142 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 2 mpf zebrafish replicate1 | SAMD00152410 | sample name:b02 1|age:2 month|biological replicate:1|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152410 | DRX153081 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152410 | 1033492200.0 | 5167461.0 | DRR162462 | 0:100 1:100 | A:310135217;C:205335529;G:207428012;T:308760225;N:1833217 | 100 | 100 | 310135217 | 205335529 | 207428012 | 308760225 | 1833217 | DRX153081 | DRS083142 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.9176 | 0.8829 | 0.18651 | 0.17848 | 0.72099 | 0.73119 | 0.54307 | 0.54697 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Juvenile | Juvenile | Brain | Nervous System | |||||||||||||||||||
| 5795 | 5795 | ERR1698352 | ERX1767860 | ERS1417534 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 012 up 058 12 | SAMEA4518355 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518355|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 012 up 058 12|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 012 up 058 12|sex:male | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 012 up 058 12 s | IonXpressRNA 012 up 058 12 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_012_up_058_12.fastq.gz | fastq | 2535299006.0 | 33956077.0 | E MTAB 5173:IonXpressRNA 012 up 058 12 | 0:74.66 | A:719061985;C:581906269;G:579932234;T:654398518;N:0 | 74 | 719061985 | 581906269 | 579932234 | 654398518 | 0 | ERX1767860 | ERS1417534 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.7343 | 0.34119 | 0.7359 | 0.48406 | 66 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5796 | 5796 | ERR1698351 | ERX1767859 | ERS1417533 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 011 up 058 11 | SAMEA4518354 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518354|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 011 up 058 11|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 011 up 058 11|sex:male | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 011 up 058 11 s | IonXpressRNA 011 up 058 11 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_011_up_058_11.fastq.gz | fastq | 3400774471.0 | 38709756.0 | E MTAB 5173:IonXpressRNA 011 up 058 11 | 0:87.85 | A:948991439;C:793389977;G:792539547;T:865853508;N:0 | 87 | 948991439 | 793389977 | 792539547 | 865853508 | 0 | ERX1767859 | ERS1417533 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.63968 | 0.27033 | 0.75213 | 0.47966 | 139 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5797 | 5797 | ERR1698350 | ERX1767858 | ERS1417532 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 010 up 058 10 | SAMEA4518353 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518353|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 010 up 058 10|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 010 up 058 10|sex:male | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 010 up 058 10 s | IonXpressRNA 010 up 058 10 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: male:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 2.14:dose | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_010_up_058_10.fastq.gz | fastq | 3502667998.0 | 39204781.0 | E MTAB 5173:IonXpressRNA 010 up 058 10 | 0:89.34 | A:976977303;C:803330255;G:808731995;T:913628445;N:0 | 89 | 976977303 | 803330255 | 808731995 | 913628445 | 0 | ERX1767858 | ERS1417532 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.65846 | 0.2815 | 0.74028 | 0.47784 | 86 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5798 | 5798 | ERR1698349 | ERX1767857 | ERS1417531 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 009 up 058 9 | SAMEA4518352 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518352|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 009 up 058 9|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 009 up 058 9|sex:male | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 009 up 058 9 s | IonXpressRNA 009 up 058 9 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: male:sex|Experimental Factor: n1:compound | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_009_up_058_9.fastq.gz | fastq | 3575088264.0 | 39745481.0 | E MTAB 5173:IonXpressRNA 009 up 058 9 | 0:89.95 | A:1011474126;C:809896078;G:807471974;T:946246086;N:0 | 89 | 1011474126 | 809896078 | 807471974 | 946246086 | 0 | ERX1767857 | ERS1417531 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.65266 | 0.30274 | 0.75286 | 0.48527 | 94 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5799 | 5799 | ERR1698348 | ERX1767856 | ERS1417530 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 008 up 058 8 | SAMEA4518351 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518351|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 008 up 058 8|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 008 up 058 8|sex:male | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 008 up 058 8 s | IonXpressRNA 008 up 058 8 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: male:sex|Experimental Factor: n1:compound | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_008_up_058_8.fastq.gz | fastq | 3259710114.0 | 38530802.0 | E MTAB 5173:IonXpressRNA 008 up 058 8 | 0:84.60 | A:916053004;C:755694888;G:751125332;T:836836890;N:0 | 84 | 916053004 | 755694888 | 751125332 | 836836890 | 0 | ERX1767856 | ERS1417530 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.70995 | 0.31365 | 0.74781 | 0.48846 | 61 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5800 | 5800 | ERR1698347 | ERX1767855 | ERS1417529 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 007 up 058 7 | SAMEA4518350 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518350|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 007 up 058 7|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 007 up 058 7|sex:male | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 007 up 058 7 s | IonXpressRNA 007 up 058 7 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: male:sex|Experimental Factor: n1:compound | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_007_up_058_7.fastq.gz | fastq | 2307842164.0 | 28984666.0 | E MTAB 5173:IonXpressRNA 007 up 058 7 | 0:79.62 | A:634041732;C:548565089;G:545418985;T:579816358;N:0 | 79 | 634041732 | 548565089 | 545418985 | 579816358 | 0 | ERX1767855 | ERS1417529 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.67542 | 0.2817 | 0.74168 | 0.47224 | 37 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5801 | 5801 | ERR1698346 | ERX1767854 | ERS1417528 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 006 up 058 6 | SAMEA4518349 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518349|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 006 up 058 6|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 006 up 058 6|sex:female | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 006 up 058 6 s | IonXpressRNA 006 up 058 6 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_006_up_058_6.fastq.gz | fastq | 2239484857.0 | 27021234.0 | E MTAB 5173:IonXpressRNA 006 up 058 6 | 0:82.88 | A:637326624;C:506830056;G:503508207;T:591819970;N:0 | 82 | 637326624 | 506830056 | 503508207 | 591819970 | 0 | ERX1767854 | ERS1417528 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.66441 | 0.31904 | 0.74905 | 0.47154 | 122 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5802 | 5802 | ERR1698345 | ERX1767853 | ERS1417527 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 005 up 058 5 | SAMEA4518348 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518348|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 005 up 058 5|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 005 up 058 5|sex:female | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 005 up 058 5 s | IonXpressRNA 005 up 058 5 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_005_up_058_5.fastq.gz | fastq | 2920608487.0 | 39573075.0 | E MTAB 5173:IonXpressRNA 005 up 058 5 | 0:73.80 | A:814851327;C:678116994;G:691911192;T:735728974;N:0 | 73 | 814851327 | 678116994 | 691911192 | 735728974 | 0 | ERX1767853 | ERS1417527 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.60005 | 0.25542 | 0.76481 | 0.4886 | 12 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5803 | 5803 | ERR1698344 | ERX1767852 | ERS1417526 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 004 up 058 4 | SAMEA4518347 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518347|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 004 up 058 4|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 004 up 058 4|sex:female | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 004 up 058 4 s | IonXpressRNA 004 up 058 4 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: female:sex|Experimental Factor: 17 ethinylestradiol:compound|Experimental Factor: 7.34:dose | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_004_up_058_4.fastq.gz | fastq | 2989727396.0 | 37953454.0 | E MTAB 5173:IonXpressRNA 004 up 058 4 | 0:78.77 | A:802963810;C:722434772;G:742850530;T:721478284;N:0 | 78 | 802963810 | 722434772 | 742850530 | 721478284 | 0 | ERX1767852 | ERS1417526 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.76402 | 0.32503 | 0.74241 | 0.4815 | 128 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System | ||||||||||||||||||||
| 5804 | 5804 | ERR1698343 | ERX1767851 | ERS1417525 | ERP018188 | PRJEB16335 | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17a ethinylestradiol | E-MTAB-5173 | Transcriptome Analysis | 17a ethinylestradiol EE2 is a synthetic estrogen commonly used as an active substance in oral contraceptives. It is frequently found in waste water effluent and raise concern due to its persistent nature. EE2 binds to estrogen receptors with similar affinity to oestradiol and acts as one of the most potent hormone mimics found in the environment. Estrogen is involved in many aspects of the development of the neuroendocrine system influencing both brain structure and behavior. We and others have reported a significant effect on non reproductive behaviors in adult fish and in recent studies we found that developmental exposure to EE2 resulted in an anxiogenic phenotype as adults even post a long remediation period. In this study we aim to study possible mechanisms behind the behavior alterations of zebrafish developmentally exposed to EE2 by sequencing the whole brain transcriptome. Zebrafish embryos were exposed to 0 2.14 and 7.34 ng/L EE2 from 1 day to 80 dpf post the exposure period a remediation period of 120 days followed before the fish were sampled. 3 male brains from the control group 0 ng/L and the 2.14 ng/L group were sampled and 3 female brains from the control group 0 ng/L and 7.34 ng/L were sampled. | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2016 10 19|ArrayExpress:E MTAB 5173 | Protocols: RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | IonXpressRNA 003 up 058 3 | SAMEA4518346 | School of Natural Science, Technology and Environmental Studies Sodertorn University | ENA first public:2017 10 02|ENA last update:2016 10 19|External Id:SAMEA4518346|INSDC center alias:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC center name:School of Natural Science Technology and Environmental Studies Sodertorn University|INSDC first public:2017 10 02T17:05:16Z|INSDC last update:2016 10 19T13:53:59Z|INSDC status:public|Submitter Id:E MTAB 5173:IonXpressRNA 003 up 058 3|age:200|broker name:ArrayExpress|common name:zebrafish|organism part:brain|sample name:E MTAB 5173:IonXpressRNA 003 up 058 3|sex:female | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | E MTAB 5173:IonXpressRNA 003 up 058 3 s | IonXpressRNA 003 up 058 3 s | RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | RNA extraction Whole brains homogenized in TriReagent according to the manufacturer 0.8 ml/sample Sigma Aldrich Germany EE2 exposure. Fish exposed to 0 2.14 or 7.34 ng/L EE2 for 80 days starting 1 dpf Ion Whole transcriptome analysis kit on RiboZero eukaryote depleted total RNA | Experimental Factor: female:sex|Experimental Factor: n1:compound | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ION_TORRENT | Ion Torrent Proton | ERP018188 | Ion Torrent Proton sequencing; RNA seq of the zebrafish danio rerio brain post developmental exposure to 17α ethinylestradiol | ENA FIRST PUBLIC:2017 10 02|ENA LAST UPDATE:2018 11 16 | IonXpressRNA_003_up_058_3.fastq.gz | fastq | 4068383115.0 | 41996847.0 | E MTAB 5173:IonXpressRNA 003 up 058 3 | 0:96.87 | A:1133167706;C:944306379;G:948626944;T:1042282086;N:0 | 96 | 1133167706 | 944306379 | 948626944 | 1042282086 | 0 | ERX1767851 | ERS1417525 | ERA739176 | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | School of Natural Science, Technology and Environmental Studies Sodertorn University|European Nucleotide Archive | 1 | 0.54804 | 0.22334 | 0.76353 | 0.49163 | 93 | B | usable mapping rate | ion_torrent | ion_torrent | full_length | random_priming | ribozero | bulk | unknown | unknown | Sweden | 2016-10-19 | Pharyngula | Embryo | Brain | Nervous System |
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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;